EsuBft94_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft94_6a-0001
Unique Name	EsuBft94_6a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_94	contig	Scaffold_94:294245..298591 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	35128.Thaps8461
ProteomeId	EsuBft94_6
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2836\|Bacillariophyta
Length	141
Hectar predicted targeting category	signal peptide
Evalue	1.38e-06
EggNOG OGs	2E0D1@1\|root,2S7TN@2759\|Eukaryota,2XCGQ@2836\|Bacillariophyta
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-06_001880.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft94_6a	EsuBft94_6a	Ectocarpus subulatus male Bft15b	gene	Scaffold_94 294245..298591 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_6a-0001	EsuBft94_6	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_94 297282..297533 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_6a-0001-exon	agat-exon-104095	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 294245..294317 +
EsuBft94_6a-0001-exon	EsuBft94_6a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 297255..298591 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_6a-0001-exon	agat-five_prime_utr-15232	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_94 294245..294317 +
EsuBft94_6a-0001-exon	agat-five_prime_utr-15233	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_94 297255..297281 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_6a-0001-cds	EsuBft94_6a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_94 297282..297533 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_6a-0001-exon	agat-three_prime_utr-23411	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 297534..298591 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_94:294245..298591+
coding sequence from alignment at Scaffold_94:294245..298591+

spliced messenger RNA

>EsuBft94_6a-0001 ID=EsuBft94_6a-0001|Name=EsuBft94_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1410bp|location=Sequence derived from alignment at Scaffold_94:294245..298591+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTCGGGGCTGCGCTGGTTCTCGACGCAAGCAACAAGACAACAACCAACA
CATCGGCAAGGGAACGACTCTTGGAGAATTCACAAAACCGCCAGACAACC
ATGCTGCGCTTCGCCGTCTCCAAGGTCGCAACGGTAGCCCTCAGACCCGC
GGTGAGCGCAGTGGCACCGCGGGCGGTCGTGGCGGCAACAACAGCCTTGC
CGCCGCAGCAGCAGCGCTTCTTTTCCACGAAGGAGGACGAAGAGGTCGTC
AAGGTGGTGCTGGCAGACTCCCTCGAGTGGGCGCTCTCCAGCCCCCCGCC
GATCCACCAGTTCGACGAGCCCCCTATCGTCGTAGAGATCGCGGAAGCTT
AAGATCAGTAGTAGCGGATGGATGGATAATTCACACATGCGCTGCACCCG
GCGTGATCTTCTCGAAGGGGGACGTGCGTGATGCGGAAGGCTTCGCCGTG
CAGAACGGCGACGACGGAGTGAAAGGGTTGGGGAACTGCAGCATATCGGC
TTAGTCGATGCGAGCGTCTTGGAGCCGCAATGGAACCTACAAAGTACCTC
CGATGAGTGTGTGTATCGGCAGCCGAGGATGTGCCGACAAGGATAGCTGA
CTGTCGCCTATCTTTTTTTTCGAGCGCTTTGCGATGTTTGGGCGTGTTAT
TCAGGGGGATCTTGCCCGAGTCCTTGGCCTGCCGAATGGGTTGCTTGCGT
CGCACGATTTGAGTTGTTTTTGTGGTAGGTGTTCCCTCTTATGTACAACG
ACACGTGCAGCAGACGGTACGGGTCGCCGGAAGAACAGGGTGGATGGGGC
CGGTGCAGGGCTTCAGGAGTTCACTTAGGTGCGTTGCTACGCAAGTCTCG
TTTGAGTATAAAGCTTGCCACCAACACGGAATCAGACTCTGAAGCACTTG
GTTTTGGTGGGGGGGGAACATCGCGTTGTACAACGAGGAACGAAAATCGA
ACATTGCTGTATCCTGAAGCTTCAGAACCCGATTGAAGTGCGATCAACGC
GAAGAACGTTCGTGTTGTGGCGTGCGCCCTTGGTGTAGTACGCAGTACGC
GTGCTCCTTCAAGTTCGATCTGCCGGGTGCGGTTTTGTCGTCTCATGTGC
AAACCACGCCGGTGCGAACCCCTGGTTCTTGCCATGCCTCGTTCTCGAGT
CCGTCTAGCTACGTCTGCGAACCGGCACAAGACTCGTTACGCCACTCTAG
TGTCAGCTGACGTGCGTGTCTTCGCCCACAGGCCATCGTGGGGTGTACAA
GGGCGCGCATGCAGTCGTTACTTTTTTTCCGTGAAATGCTCACGCCCGGG
GTGTACGTTTCGTAACCAAACCGTACTCGAACAGCAAGGTCACCAGACAA
TTATGCTTGGCCTTCGGACCGAATAACGCATGTATGCGGTCGTGTTGTGG
ACGAGTGATC

protein sequence of EsuBft94_6a-0001

>EsuBft94_6 ID=EsuBft94_6|Name=EsuBft94_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=83bp
MLRFAVSKVATVALRPAVSAVAPRAVVAATTALPPQQQRFFSTKEDEEVV
KVVLADSLEWALSSPPPIHQFDEPPIVVEIAEA

mRNA from alignment at Scaffold_94:294245..298591+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft94_6a-0001 ID=EsuBft94_6a-0001|Name=EsuBft94_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4347bp|location=Sequence derived from alignment at Scaffold_94:294245..298591+ (Ectocarpus subulatus male Bft15b)
GGTCGGGGCTGCGCTGGTTCTCGACGCAAGCAACAAGACAACAACCAACA
CATCGGCAAGGGAACGACTCTTGGTAAGCGCAACAGAGTCTTGCGGTACC
TCACCACTTCGTTGTCGGTTACGGTACCTCTTCGGCAGAGCGCTCGGCTT
GCTTGCTTCTTGCCAACCAAGCACACCAAGGATGTCTTGTCGCGTACGGT
CTCGTAGCAAGTACATAAAACGCTGCTTGAGTGACGCACAGGAGGGTACG
TAGCGCTTCCACCTTTGCGCTGCAGTGGGCAGCATCAAGGGAGTACATGG
TGCATTGCAGGGGCAGGGGTGCGTAGGAATCAACTGTCACGCTACTGGTT
CTTTGCAAGTCTGGGAGCCTCACTTGTTGCCTCGCTTTGTTGACAATATG
CCGCATGCTGCGTTTACTTGTGCGAAGGGCTTCGGATTTGCACACACATT
ATATACCTGATTCCATGCACCTTCACACTCGTGGCTGTGTGCTACAACGC
ATATGCTGCAAGAGATAAGCAAGTGTGCCGTTGATTCTTCTTCAAAGCAG
CCGGGATACTCGAATATGGTATATTGAATAACCCCCCCCCCGTCCCCCCC
CCCGGTATTTACCATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTTG
TAAAACAAGCCGCCCCTCCCGGTGTTTGCCATCGGGGTTGAGTTTTCGTC
GCTTGGCAACGACGTTGTAAAACAAGCCGCCGCCCCCCGGTGTTTGCCAT
CGGGATTGGGTTTCGTCGCTTGGCAACGACGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCAAGCCGCCCCCCCCCGTGTCGGCAGTGCTGTCGGATAACGGTGAATA
TCACTTGCCCGAAATGCTTCATGTAGCGTTACACCGTCCCTTGTGTCTCC
CTCGCGTAACTCACGCTACGGATGGTGATTACCCTCAGTAGCTACGGAAG
CTAACGCTTAGAGCAACTGGTGTTGCATCGTATGCGGCACGGGACTATTA
GATCGTTAGTAGCTTGCACATCTGTCCGAAGCACGTGTGTTGCGCAGTTT
TTCTGTGCACACAGCAGACAAGCGCTCCCGTTCTTTCCTTCCCGCCAAAT
AGTACACAACATGTACACGTGTAGACTACCCTCGCAAACGCAAATCGCCA
AATACACAACGCCTGTGCGGGTGTTCAGACATCCAAGATGCAGCGCGTTG
TCCTACTTTGGGGACCTTCTCTGTCAAAACAGTGTTCCAAGTTGTTGCCG
CGCCGTTCCCGACAGCAGTACCCGCCCCATGGCGAAGCAACTATACTGCT
GTACACCGCACACGGGCCCTCAAGTATTCTTACCCATGGAACGAGCGCCA
CATCCGACTCGAATGTCTCTCACGACGACGCCCGCTGCCGCCTTTGTGCT
GCTACCACAGGAGAATTCACAAAACCGCCAGACAACCATGCTGCGCTTCG
CCGTCTCCAAGGTCGCAACGGTAGCCCTCAGACCCGCGGTGAGCGCAGTG
GCACCGCGGGCGGTCGTGGCGGCAACAACAGCCTTGCCGCCGCAGCAGCA
GCGCTTCTTTTCCACGAAGGAGGACGAAGAGGTCGTCAAGGTGGTGCTGG
CAGACTCCCTCGAGTGGGCGCTCTCCAGCCCCCCGCCGATCCACCAGTTC
GACGAGCCCCCTATCGTCGTAGAGATCGCGGAAGCTTAAGATCAGTAGTA
GCGGATGGATGGATAATTCACACATGCGCTGCACCCGGCGTGATCTTCTC
GAAGGGGGACGTGCGTGATGCGGAAGGCTTCGCCGTGCAGAACGGCGACG
ACGGAGTGAAAGGGTTGGGGAACTGCAGCATATCGGCTTAGTCGATGCGA
GCGTCTTGGAGCCGCAATGGAACCTACAAAGTACCTCCGATGAGTGTGTG
TATCGGCAGCCGAGGATGTGCCGACAAGGATAGCTGACTGTCGCCTATCT
TTTTTTTCGAGCGCTTTGCGATGTTTGGGCGTGTTATTCAGGGGGATCTT
GCCCGAGTCCTTGGCCTGCCGAATGGGTTGCTTGCGTCGCACGATTTGAG
TTGTTTTTGTGGTAGGTGTTCCCTCTTATGTACAACGACACGTGCAGCAG
ACGGTACGGGTCGCCGGAAGAACAGGGTGGATGGGGCCGGTGCAGGGCTT
CAGGAGTTCACTTAGGTGCGTTGCTACGCAAGTCTCGTTTGAGTATAAAG
CTTGCCACCAACACGGAATCAGACTCTGAAGCACTTGGTTTTGGTGGGGG
GGGAACATCGCGTTGTACAACGAGGAACGAAAATCGAACATTGCTGTATC
CTGAAGCTTCAGAACCCGATTGAAGTGCGATCAACGCGAAGAACGTTCGT
GTTGTGGCGTGCGCCCTTGGTGTAGTACGCAGTACGCGTGCTCCTTCAAG
TTCGATCTGCCGGGTGCGGTTTTGTCGTCTCATGTGCAAACCACGCCGGT
GCGAACCCCTGGTTCTTGCCATGCCTCGTTCTCGAGTCCGTCTAGCTACG
TCTGCGAACCGGCACAAGACTCGTTACGCCACTCTAGTGTCAGCTGACGT
GCGTGTCTTCGCCCACAGGCCATCGTGGGGTGTACAAGGGCGCGCATGCA
GTCGTTACTTTTTTTCCGTGAAATGCTCACGCCCGGGGTGTACGTTTCGT
AACCAAACCGTACTCGAACAGCAAGGTCACCAGACAATTATGCTTGGCCT
TCGGACCGAATAACGCATGTATGCGGTCGTGTTGTGGACGAGTGATC

Coding sequence (CDS) from alignment at Scaffold_94:294245..298591+

>EsuBft94_6a-0001 ID=EsuBft94_6a-0001|Name=EsuBft94_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=252bp|location=Sequence derived from alignment at Scaffold_94:294245..298591+ (Ectocarpus subulatus male Bft15b)
ATGCTGCGCTTCGCCGTCTCCAAGGTCGCAACGGTAGCCCTCAGACCCGC
GGTGAGCGCAGTGGCACCGCGGGCGGTCGTGGCGGCAACAACAGCCTTGC
CGCCGCAGCAGCAGCGCTTCTTTTCCACGAAGGAGGACGAAGAGGTCGTC
AAGGTGGTGCTGGCAGACTCCCTCGAGTGGGCGCTCTCCAGCCCCCCGCC
GATCCACCAGTTCGACGAGCCCCCTATCGTCGTAGAGATCGCGGAAGCTT
AA