EsuBft94_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft94_4a-0001
Unique Name	EsuBft94_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_94	contig	Scaffold_94:307904..314636 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft94_4
Protein domains	IPR009018
Protein domains	IPR003210
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	124
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Signal recognition particle, SRP9/SRP14 subunit
Ec32 ortholog	Ec-06_001860.2
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0030942
GO	0008312
GO	0005786
GO	0006614

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft94_4a	EsuBft94_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_94 307904..314636 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_4a-0001-exon	EsuBft94_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 307904..308844 -
EsuBft94_4a-0001-exon	agat-exon-104090	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 314338..314636 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_4a-0001-exon	agat-three_prime_utr-23409	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 307904..308652 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_4a-0001-cds	EsuBft94_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_94 308653..308844 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_4a-0001-exon	agat-five_prime_utr-15230	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_94 314590..314636 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_4a-0001	EsuBft94_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_94 308653..314589 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_94:307904..314636-
coding sequence from alignment at Scaffold_94:307904..314636-

spliced messenger RNA

>EsuBft94_4a-0001 ID=EsuBft94_4a-0001|Name=EsuBft94_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1240bp|location=Sequence derived from alignment at Scaffold_94:307904..314636- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACAGCATACCTGCTGCGTGAGAGGTGCTGGGGAAGCAGAGAGTCAAGATG
GTCTTGCTGGATTCGGCAGATTCCTTCTTCGTTGAGTTGGAGCAGATGTT
TGCGCTGTGCAAACAACGAGGGGCAGGAACAGTCTACACGACACTGAAGA
AAGTAGAGGCTGGGAACAAGCAACAGCTCAAGAAGGCAAGCAAGGAGACA
GGGGGGGGGCGAAAATCGGCGGGGCCCGGAGGAAGGAGAGAAGGATGGCT
TGCTCGCGCCAAGATATCGAACCAAAAAGCCCGCAAGATATCCGTACTGG
TGTCAGACGCAGAGGTAGCTCAGTGCCGGGATCGATTAGAGGCAGTAAAG
AAGGCAATGCCTGTATGTACGATAGCGGGGGGCACCAAGAAGCGCGGGCG
AAAGCCAACGGGCAATGGGGCGGCAGGGGCAACAGGTTCCCAGAACGGCA
AGAGGCCTAAGGGGGGCACCGTGGGTTCGAGTGCAACATGACACCATGGG
CACCTGGATAATTAGTGTGTACAACTGGGTGGTGGTATGTCTTTTCGTCA
TGGGGTTATTTTTCGCAGCTCGCTGTGAGGGGCGGCGGCGCTACCAGCGT
ACGTGGCACAAGCGCTGAAATGAGAAAGATGGCAAGAAACACGTGGAGAT
TTCGCTCTCGTACGTTGATGGTGTAAGGATGGGATGATTTCTCGTGGGTA
TAAAGACGTGTTCGTAGCAGGTGTGTACCAACACATGCCTGACGGGTACA
TGTATGGTAATAAAACAAAAGCAGAACAACCTGATCGCCCTGTCAATGTG
TTGTTTCATTCTGAGACTTCGCAGGCAAAAAGGTTGTTGGTTGCACCATT
ACCGATTGTACCATGGTGCACCCGTGGCCTGTCTGCAGGCAGCACCCCTT
GTCATTAGACTCGACGACTCGTTTGGTATTCTACCATCCGCCCAGCCTCC
TGTTTTTGCCCTCGACGTGTGCTTTTACAACCATACGTGTAATTTCTTTG
GCAACCCGCGGGAAGCCCGTCTTTTGTTCGTTGTTCGTGCATAGTATACG
TTCAATGTGGTCAGGCATTTTTCCGAGTTTGATCAACCAGGGCATTAGTT
TGCGGTGCTGCCACGTCTCTTTTCTTTTTCGGGACGCATAGAAGAGACCT
TGAGCCTCCATCTTGTGGGGCCGCCCTCTGCTTTGCCTTGTTTTTTTTTT
TTGGGCTGCCCGTCCCGCGTTTGCATCATCTGTATACTGG

protein sequence of EsuBft94_4a-0001

>EsuBft94_4 ID=EsuBft94_4|Name=EsuBft94_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=147bp
MVLLDSADSFFVELEQMFALCKQRGAGTVYTTLKKVEAGNKQQLKKASKE
TGGGRKSAGPGGRREGWLARAKISNQKARKISVLVSDAEVAQCRDRLEAV
KKAMPVCTIAGGTKKRGRKPTGNGAAGATGSQNGKRPKGGTVGSSAT

mRNA from alignment at Scaffold_94:307904..314636-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft94_4a-0001 ID=EsuBft94_4a-0001|Name=EsuBft94_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6733bp|location=Sequence derived from alignment at Scaffold_94:307904..314636- (Ectocarpus subulatus male Bft15b)
ACAGCATACCTGCTGCGTGAGAGGTGCTGGGGAAGCAGAGAGTCAAGATG
GTCTTGCTGGATTCGGCAGATTCCTTCTTCGTTGAGTTGGAGCAGATGTT
TGCGCTGTGCAAACAACGAGGGGCAGGAACAGTCTACACGACACTGAAGA
AAGTAGAGGCTGGGAACAAGCAACAGCTCAAGAAGGCAAGCAAGGAGACA
GGGGGGGGGCGAAAATCGGCGGGGCCCGGAGGAAGGAGAGAAGGATGGCT
TGCTCGCGCCAAGATATCGAACCAAAAAGCCCGCAAGATATCCGTACTGG
TAAGGAAACGCGATGAGGTTACATCTTTGAGCAGCTTTGCTGATAACTGC
TGCTGGTGTGGTGTTTTTGCGAGCGAAAGGATCTATGTCACAACTGGCAA
AAGAGAGCCAGCTTGTACTAGATCGGGAGGTGGAATAGTTTTTTTTTTTG
TTTGAAAAAAATACCTGCAGCAGTAGGCTTTTGGGCGGGAATAATACACA
TTGGATTGCGTTCGTTCGCAGTCGCCCACATACCTATTGTCAATAAACAT
GTCTTGGAAAAAAAAGATACCTCCACACGGACTCGAACCCATGATTTCGA
GCGTCAGGGTAGCCTTCACCGAGCTCACGAAGTGAATTGGCTTTTTGACA
ACGTCGTTGCCGAGCGACGAAAACCCAATCCCGATGGCAAACACCGAGGG
GGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGCTTGTTGGTTCGAGCTTT
GATCACGAAACCTCAAAAGCGTTCAAGCGTGTGATGGGTAACCAGGCTAG
CACGGGAGGCACTGGTCGCACACTAGGCCTTCGCGCACAAAAGTATAGAG
AGGCGTACAGCAGTACATGTCGCACCAATGGTGGTGCGTAGCAGCGTCTG
TGTGTTGTTGGTGTCATGTGCCCCTCTCNAGCGTTCAAGCGTGTGATGGG
TAACCAGGCTAGCACGGGAGGCACTGGTCGCACACTAGGCCTTCGCGCAC
AAAAGTGTAGAGAGGCGTACAGCAGTACATGTCGCACCAATGGTGGTGCG
TAGCAGCGTCTGTGTATTTTGGTGTCATGTGCCCCTCTCCGCGGAAAGAG
AGAGAGAGAGGCCGCCGCTGCTGCTGCAGCAGCAGCTGCTGCTGCAACCA
AATGTTGATCTCTCCTCTCGCTTCCTCCGCCGATAGCTAACAGCAGCAGT
GTATGGCACACCCTTCTCCCGCCGTCTCGCCCTCGCTGTGGTCTGTGTCT
CCCTCTCCCTGTTTGTCCATGTCTGGCTCTGTGTGTGTGGTGTGTGGTGT
GCGAGGTTATCTGTCTTGGTTCAAAATCAAACGACACCTCCTCTCGGTGT
TGCAAGGGGCTAGCATCTTCCCTGCTTCAAGTTGGGTACCGACGCTGCAC
TATCTCGACGCACCGAGCACGGATTGAAGAGGTAGCAGTTGGGGCAGCTC
GGGTAAAATATTACTTGTTGTGAACACGTCTTAGATTGCAATTTGGTGCC
GAAATGGTGAAATGGGCTCGAGTCTGCTGGCTTATTTATTGCTGGTCAGA
CAGACCGTCGGACAGCCTTGGCCCGTTTGCCCCCACCCCTCTGAACAGCT
TTTTTTTTTAACAAAAGGCGTCCCTATCGGGCCACTTCTCTTCAAAAATA
AACTATAATTATTGTGTGCCCTGCTAACAAAGCTTGCTCACAGGACCCAC
CACATGGTGCGTACTCGGTCCACACCTTTCGGGTGCTCAACTTGCAGCAG
ACTTTTGGAAAAACTATCTTGTTTAGAATGGTGTCATAATGTCGACACAC
GCTTTCCAGAGAGCCCTGCGAGGAACTGGTGCCCGATATGGCGGTGCAAA
GGAGGAACACCTACCGTAAGAGGTGGGGATGGCATCCCCTAGAACGATTT
TCAAAACTCGATTGGTCCACAACCAAGCTTGTGCCAACACCAATAATGGT
GGTATTGGAAGTATCTCGTCGACGGCTTTCCCCAGACTTATCGGGCTCTT
CACACACCCAATTGGCTACGGAGCAATCGAGCTGTGAGTCGGTCTACACT
GCTGTAGGGGGGTTGCCATCTCTCCTCGTTTTATGGTAGTTGATGGTCCT
TCAACATCGCCCCTCCGGTTGGTTGCTACCCTGAGCTTTGACTACGGTTA
TCGCAGAACGATTGCCGTACATCCAAGCATTCGGCACGTGATTGCAGACC
AACGAGCTCTATTCGCACAGCGCCATATCCCCCGAACCTCGGAGTACTTC
GGTATGCATGGTCGGTTGCATCAACGGGGCTATAGATAGACCAACCGAAG
CTGCTGACTTCACGCGACCCCGATATACTACACAACAGCAGCGAGTAGTA
TCGAAGGTGCATGTGGACCGTCTTGACAGGAATAGTTGGTTCGACTCGCT
TTTGTAGCGGCGACTTGACCCCTTCGCCAAGCAATCGGTCTATCGCTGAG
GCTGCGACAGCAAGGTGCTAATAGAACTTCGGTAGTACAGCAGTACCCGC
CCGCTTTAGAAGGTGACATTAAACCAGTAGAATCCGTCAATTGCTTAGTC
TAGTGGTTTGATTTCGGCTTCTTTACCGATCGTAAGAAAAACGGAGTATG
TTCGTAATAACCAAGAAATTGAACTTCGCGGCCGGCGCGCACTGTATTCT
ATGTAGAAGCCTTTGCTCAGCGGTGACAAAAAAATTTAGTCTCGCCAAGG
TCTCGCTCATAATAGGTCTGCACTGCTGTGTCTGGAGCTCCACTGGCTAC
AGCGATGTGTCGGTACAGTGCTGCTGTGTCTGTGGAGTCTCCACTGGCTA
CTCTGTTGCGATCAGTGCTGTCCTTCGCTGTTCAGACGCTCCCAGTGCAC
GCCGGGTGAAACGGAACCATTCGCCTCCTAGAACACGTCCCCCACGTGCC
ACTTGAAAAGGAGGCGACGGACGGTGTCCGCTGCTTTGATGCTACATGAT
ACGCCGAGCGCAATTATTGCGGCTGCACACCTCGGAGGGCAAACGGCCAC
AACGCCGAACGCGTCAATCGAAACAGCTTAGTATGGGATGAGGCTTTTTT
TTTTCACAATTTCACCCTTGGCCATCGAAAAACGTTTCGAAGCCCTCGTT
TGTTGAAGCCATTCAGTTGGCTATGCGCTTTTCGAGTCCTCGTTGAATCA
TCACTAAATTCAACCGTGGAGAACCCCTGAAAAAGTGCTAAACCGTCGAG
CTACAGTAATGGTGACCCCTTGAAGAATCTGGTAGTACTTTGAACTGCAG
CCACTATGTAATCCGCACAGTTAGCCAGCGTTCTTGCCACCGATCACGGT
TTTCTCGCGTAACTGCAGGGAGTGATTGTTGTGTCGATTTCCTATTCTTC
GTACGACCAACTGTTGTGCCGCATGCCATTATTGGCCTCTCTAGACACGC
CACGTGAAGACGGGCGTTCACAACGTACGACGTGTCGTGCCCTGTGTTTC
CCCTTGTTCTTCACTCGCCGCCAACACCGACCAGTGTGTTCTTCTTGGAT
GTCGCGTGCACCGTTTCTGCTATCGTTGCTGCTGCGAAAATTCCATGTTC
TTGGCATCATGCGGTGGCCAGCTATCGTGGTGCCTGGTGTTGCGAAAGGT
GCTCCGGTGAAAACGTGACCTGTGTAATTTAGCGGTGCTGCGGATGAGGC
TTTTTTTTAATTCTAAATGTGCACCCCCCAGACCGCTGAACGGATGAGCT
CTCAGTTTATTTCGCGGTTTTTGTTGCCTGCGTCCAATATGTATTGAGGC
ACAGCATCGAAAGTCTCGGCTGTCCCTCTCTCGAGCGCAGTTCATCCAAC
CCGAGAGATGCACCCCGAGACGGTTCGATGCTTGTTAAGTTCTCAAGCTG
GGTTGTGCGTGCCCCCGCTTCCGTTCGTCGTTTTTTGTGCAGGTGTCAGA
CGCAGAGGTAGCTCAGTGCCGGGATCGATTAGAGGCAGTAAAGAAGGCAA
TGCCTGTATGTACGATAGCGGGGGGCACCAAGAAGCGCGGGCGAAAGCCA
ACGGGCAATGGGGCGGCAGGGGCAACAGGTTCCCAGAACGGCAAGAGGCC
TAAGGGGGGCACCGTGGGTTCGAGTGCAACATGACACCATGGGCACCTGG
ATAATTAGTGTGTACAACTGGGTGGTGGTATGTCTTTTCGTCATGGGGTT
ATTTTTCGCAGCTCGCTGTGAGGGGCGGCGGCGCTACCAGCGTACGTGGC
ACAAGCGCTGAAATGAGAAAGATGGCAAGAAACACGTGGAGATTTCGCTC
TCGTACGTTGATGGTGTAAGGATGGGATGATTTCTCGTGGGTATAAAGAC
GTGTTCGTAGCAGGTGTGTACCAACACATGCCTGACGGGTACATGTATGG
TAATAAAACAAAAGCAGAACAACCTGATCGCCCTGTCAATGTGTTGTTTC
ATTCTGAGACTTCGCAGGCAAAAAGGTTGTTGGTTGCACCATTACCGATT
GTACCATGGTGCACCCGTGGCCTGTCTGCAGGCAGCACCCCTTGTCATTA
GACTCGACGACTCGTTTGGTATTCTACCATCCGCCCAGCCTCCTGTTTTT
GCCCTCGACGTGTGCTTTTACAACCATACGTGTAATTTCTTTGGCAACCC
GCGGGAAGCCCGTCTTTTGTTCGTTGTTCGTGCATAGTATACGTTCAATG
TGGTCAGGCATTTTTCCGAGTTTGATCAACCAGGGCATTAGTTTGCGGTG
CTGCCACGTCTCTTTTCTTTTTCGGGACGCATAGAAGAGACCTTGAGCCT
CCATCTTGTGGGGCCGCCCTCTGCTTTGCCTTGTTTTTTTTTTTTGGGCT
GCCCGTCCCGCGTTTGCATCATCTGTATACTGG

Coding sequence (CDS) from alignment at Scaffold_94:307904..314636-

>EsuBft94_4a-0001 ID=EsuBft94_4a-0001|Name=EsuBft94_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=444bp|location=Sequence derived from alignment at Scaffold_94:307904..314636- (Ectocarpus subulatus male Bft15b)
ATGGTCTTGCTGGATTCGGCAGATTCCTTCTTCGTTGAGTTGGAGCAGAT
GTTTGCGCTGTGCAAACAACGAGGGGCAGGAACAGTCTACACGACACTGA
AGAAAGTAGAGGCTGGGAACAAGCAACAGCTCAAGAAGGCAAGCAAGGAG
ACAGGGGGGGGGCGAAAATCGGCGGGGCCCGGAGGAAGGAGAGAAGGATG
GCTTGCTCGCGCCAAGATATCGAACCAAAAAGCCCGCAAGATATCCGTAC
TGGTGTCAGACGCAGAGGTAGCTCAGTGCCGGGATCGATTAGAGGCAGTA
AAGAAGGCAATGCCTGTATGTACGATAGCGGGGGGCACCAAGAAGCGCGG
GCGAAAGCCAACGGGCAATGGGGCGGCAGGGGCAACAGGTTCCCAGAACG
GCAAGAGGCCTAAGGGGGGCACCGTGGGTTCGAGTGCAACATGA