EsuBft94_24a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft94_24a-0001
Unique NameEsuBft94_24a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_94contigScaffold_94:120207..120893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005100548.1
ProteomeIdEsuBft94_24
Protein domainsPTHR25952
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl33208|Metazoa
Length68
Hectar predicted targeting categoryother localisation
Evalue2.23e-13
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft94_24aEsuBft94_24aEctocarpus subulatus male Bft15bgeneScaffold_94 120207..120893 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft94_24a-0001-exonEsuBft94_24a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_94 120207..120893 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft94_24a-0001-exonagat-three_prime_utr-23405Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_94 120207..120230 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft94_24a-0001-cdsEsuBft94_24a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_94 120231..120818 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft94_24a-0001-exonagat-five_prime_utr-15227Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_94 120819..120893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft94_24a-0001EsuBft94_24Ectocarpus subulatus male Bft15bpolypeptideScaffold_94 120231..120818 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft94_24a-0001 ID=EsuBft94_24a-0001|Name=EsuBft94_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=687bp|location=Sequence derived from alignment at Scaffold_94:120207..120893- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGGTTTGTGTACCTCGGGCGTACCATGTCCGCGGACGGAAAGGCCGACC
GGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCCGGAAG
AGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCCAGCTCAAGATCCG
GCTTCTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCCTCGT
GGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAG
TTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCC
CCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCG
AGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTTATGCGC
ATGGAGGACAACCGCCTCCCCAAGCGTATGCTGTTAGGAGAGATGGCGGG
GGGCGGGGAATACCGGGGCGGGCAGGAGAGCCACTGGGTGTCTCGTGTAG
GAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGGGGGGAA
TGGAAAGAGAGCGCCAAGGACTCGGAGGTGTGGAACAACAAGGTCGAGGA
CGGGGCGGCATGACTCATGAGGAAATGGCACAGGCAG
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protein sequence of EsuBft94_24a-0001

>EsuBft94_24 ID=EsuBft94_24|Name=EsuBft94_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=195bp
MSADGKADREITSRSCRAWKCYRRKSASMYDRRRADRQLKIRLLQAEVVE
TLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKRSDRPLSYAQALI
QAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGEMAGGGEYRGGQ
ESHWVSRVGEDLVAFNMGDEKEGGEWKESAKDSEVWNNKVEDGAA
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mRNA from alignment at Scaffold_94:120207..120893-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft94_24a-0001 ID=EsuBft94_24a-0001|Name=EsuBft94_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=687bp|location=Sequence derived from alignment at Scaffold_94:120207..120893- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGGTTTGTGTACCTCGGGCGTACCATGTCCGCGGACGGAAAGGCCGACC
GGGAGATCACGAGCCGCAGCTGCCGAGCGTGGAAGTGCTACCGCCGGAAG
AGTGCTTCGATGTACGACAGGCGACGGGCCGACCGCCAGCTCAAGATCCG
GCTTCTCCAGGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCCTCGT
GGAGCCTAACAGCGGAGCACTACACGAAGCTCAATGGGACCCACCGCCAG
TTCCTCACACGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCC
CCTGTCCTATGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCG
AGGCCACCGTGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTTATGCGC
ATGGAGGACAACCGCCTCCCCAAGCGTATGCTGTTAGGAGAGATGGCGGG
GGGCGGGGAATACCGGGGCGGGCAGGAGAGCCACTGGGTGTCTCGTGTAG
GAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGGGGGGAA
TGGAAAGAGAGCGCCAAGGACTCGGAGGTGTGGAACAACAAGGTCGAGGA
CGGGGCGGCATGACTCATGAGGAAATGGCACAGGCAG
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Coding sequence (CDS) from alignment at Scaffold_94:120207..120893-

>EsuBft94_24a-0001 ID=EsuBft94_24a-0001|Name=EsuBft94_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=588bp|location=Sequence derived from alignment at Scaffold_94:120207..120893- (Ectocarpus subulatus male Bft15b)
ATGTCCGCGGACGGAAAGGCCGACCGGGAGATCACGAGCCGCAGCTGCCG
AGCGTGGAAGTGCTACCGCCGGAAGAGTGCTTCGATGTACGACAGGCGAC
GGGCCGACCGCCAGCTCAAGATCCGGCTTCTCCAGGCTGAAGTGGTGGAG
ACTCTCCTGTATGGGTGCGCCTCGTGGAGCCTAACAGCGGAGCACTACAC
GAAGCTCAATGGGACCCACCGCCAGTTCCTCACACGGTGCATCGGCTGGA
GCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATC
CAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAACGGAGACT
GTGTTTCGCGGGCTTTGTTATGCGCATGGAGGACAACCGCCTCCCCAAGC
GTATGCTGTTAGGAGAGATGGCGGGGGGCGGGGAATACCGGGGCGGGCAG
GAGAGCCACTGGGTGTCTCGTGTAGGAGAGGACCTCGTGGCCTTCAACAT
GGGAGACGAAAAGGAAGGGGGGGAATGGAAAGAGAGCGCCAAGGACTCGG
AGGTGTGGAACAACAAGGTCGAGGACGGGGCGGCATGA
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