EsuBft94_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft94_23a-0001
Unique Name	EsuBft94_23a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_94	contig	Scaffold_94:128074..131964 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft94_23
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	389
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft94_23a	EsuBft94_23a	Ectocarpus subulatus male Bft15b	gene	Scaffold_94 128074..131964 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_23a-0001-exon	EsuBft94_23a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 128074..131964 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_23a-0001-exon	agat-five_prime_utr-15226	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_94 128074..128310 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_23a-0001-cds	EsuBft94_23a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_94 128311..129006 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_23a-0001-exon	agat-three_prime_utr-23404	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 129007..131964 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_23a-0001	EsuBft94_23	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_94 128311..129006 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_94:128074..131964+
coding sequence from alignment at Scaffold_94:128074..131964+

spliced messenger RNA

>EsuBft94_23a-0001 ID=EsuBft94_23a-0001|Name=EsuBft94_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3891bp|location=Sequence derived from alignment at Scaffold_94:128074..131964+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGAAACGTTCGGGCCGAAGATCAGGGAAGAAGCGTCCGGCGAGGGTGA
AGGCCAGACGTACTTTAGTCCTACTACAACCGCAGTTGGAGCAGAAGATT
GCAGAGGTGGCAACGAGGAGCAGCAGGCGGTGGGGAAGGCGGAGCCAAAG
GCCCGCAAGGAACGTGAGATCGCCGAGGCTGAGCGTGCAAAAACGGCGAG
CACTACCTCGTGAGTTCGTTCTCGATCGCGAGTCAAGATGGGAAGAGACC
ACGAGCAGTTGCCCATAGTGACGGAAGCAAGAGACAGAGGAAGCCGCGCG
CGAAGGTATGGGTCACCACTACTCCCGGCGAGCCATGTAACCTGTGCCCA
CGGGGGGAGCAATTGGCAGGAGAGAAACTGTATGCTGCATGTCACAGGTC
GGCAGATGAGAAGGACTTCACGCATATCGCCAGTCGCAGTTCTACGGCTA
GAGATCCCTGCGACGGACTCCGATTTCCAGGGTTGGATTCCCGACGACGA
CGAGAAGGTACGCCTTTTTGTCCTCGTCTACCTGCTTGCTGGTTGCGACT
TCCTGCCTGCCATATCGGGCCTGCCTTTCGGGACCATGTGGGCTCTTACT
CTGAAGAGCGTGCGGACGGAGGGTGTGTTTCGCACGTACATCTGCGCGCG
CGAGGGTGGGGAATGGGGCATCAAGACTGACGAGTGCATCAAGTTGTTGG
CGAACATATTCTACTTTAAGTATGAAGCTTCCTTTACTCGTGGTGGGCAG
GAACCCGGCTGGATTTTCCGCACGGACAACGGCGATGTCGCACATTACGT
CGACGTCATTCGGATGCTTATCCTCAGGCGTGGTTCAAAGAAGGCTACAT
CAACGTGCCCTTGTTCGAGTCCGTGCACCAGCAGAGCGAGCGAGGCCATC
AAGTGCTTGGGTACTGGCGAGATGGCTGTTTAGAGGTGGCACCAGTACGA
GACTTCAACGGCAAGGGATGGGGGATCGACCCGAAAGCGGGGGGTACCAG
CCCGGAGCACATGACAGCGGAAAATCGCGTGGTATGGCTGTCTGAGTATT
CTTACGTTGGCACCGACAACAAGACGCAAATGGAGAATTGTGGTTGCAAA
CCGGTCCCGGGTAAGAAGAGTCTCTGCGTGAGGTGCGGCTGTCGAAAAGC
AGGAAGGAAATGCTAGCTGGCATTGGTGCGCAGGGCCACCTATGGACTGA
TTCGCGCGGCGGAACCTGAGGCTCGGATCGCTGCTGTTACATCCAGCGGT
CCTGCTGCGCCCACTGTTCCTGCTACACCCTCCATTCCTACAACATCTGT
AATCGTAGCCGAAGCCCTGCGTTCTCTTTTGGCGGTACGAGCCGGTAGTC
AACGCAGCCGCACAGGCAGTCGCTAAGCAGCAGGCAGCCCCGCCGGGTGA
TTCAACAGGGACCGAAGGACAAGGACGGGGAGTAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAAAACGAAGGGGGGGGGGTTGTACTCATAGTCGTGCA
TGCCGTCGTTAGACCATTGACCTCGCATCCCTACAAAACCAGGACGGAGC
ACGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGNNNNNN
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NNNACCAACTTCTCGACCATAAACTGAGGGTGCGGCAGGGATTTGCGTGA
TTGTGGCCCGATTTCATCGTATGAGAACGTACTACGGCGCGCAGAACGCC
GAAGCGAATCCCACCCAGGTGACCTTAGTCCACATTAACCAACCCCCATG
CTTACCGCCTGCGCTTCCCGTTGTTTGCCTTTGCTGCTTTTGCTTGTGTG
TGACAAAATGGTGGCAGTGACGACGACAGGTTCCTCCGTGCTAAATAGCG
TATGGTGGAGAAGGAGGAGACCTTGGAGAACAGGGTGTGGG

protein sequence of EsuBft94_23a-0001

>EsuBft94_23 ID=EsuBft94_23|Name=EsuBft94_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=231bp
MGRDHEQLPIVTEARDRGSRARRYGSPLLPASHVTCAHGGSNWQERNCML
HVTGRQMRRTSRISPVAVLRLEIPATDSDFQGWIPDDDEKVRLFVLVYLL
AGCDFLPAISGLPFGTMWALTLKSVRTEGVFRTYICAREGGEWGIKTDEC
IKLLANIFYFKYEASFTRGGQEPGWIFRTDNGDVAHYVDVIRMLILRRGS
KKATSTCPCSSPCTSRASEAIKCLGTGEMAV

mRNA from alignment at Scaffold_94:128074..131964+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft94_23a-0001 ID=EsuBft94_23a-0001|Name=EsuBft94_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3891bp|location=Sequence derived from alignment at Scaffold_94:128074..131964+ (Ectocarpus subulatus male Bft15b)
GTTGAAACGTTCGGGCCGAAGATCAGGGAAGAAGCGTCCGGCGAGGGTGA
AGGCCAGACGTACTTTAGTCCTACTACAACCGCAGTTGGAGCAGAAGATT
GCAGAGGTGGCAACGAGGAGCAGCAGGCGGTGGGGAAGGCGGAGCCAAAG
GCCCGCAAGGAACGTGAGATCGCCGAGGCTGAGCGTGCAAAAACGGCGAG
CACTACCTCGTGAGTTCGTTCTCGATCGCGAGTCAAGATGGGAAGAGACC
ACGAGCAGTTGCCCATAGTGACGGAAGCAAGAGACAGAGGAAGCCGCGCG
CGAAGGTATGGGTCACCACTACTCCCGGCGAGCCATGTAACCTGTGCCCA
CGGGGGGAGCAATTGGCAGGAGAGAAACTGTATGCTGCATGTCACAGGTC
GGCAGATGAGAAGGACTTCACGCATATCGCCAGTCGCAGTTCTACGGCTA
GAGATCCCTGCGACGGACTCCGATTTCCAGGGTTGGATTCCCGACGACGA
CGAGAAGGTACGCCTTTTTGTCCTCGTCTACCTGCTTGCTGGTTGCGACT
TCCTGCCTGCCATATCGGGCCTGCCTTTCGGGACCATGTGGGCTCTTACT
CTGAAGAGCGTGCGGACGGAGGGTGTGTTTCGCACGTACATCTGCGCGCG
CGAGGGTGGGGAATGGGGCATCAAGACTGACGAGTGCATCAAGTTGTTGG
CGAACATATTCTACTTTAAGTATGAAGCTTCCTTTACTCGTGGTGGGCAG
GAACCCGGCTGGATTTTCCGCACGGACAACGGCGATGTCGCACATTACGT
CGACGTCATTCGGATGCTTATCCTCAGGCGTGGTTCAAAGAAGGCTACAT
CAACGTGCCCTTGTTCGAGTCCGTGCACCAGCAGAGCGAGCGAGGCCATC
AAGTGCTTGGGTACTGGCGAGATGGCTGTTTAGAGGTGGCACCAGTACGA
GACTTCAACGGCAAGGGATGGGGGATCGACCCGAAAGCGGGGGGTACCAG
CCCGGAGCACATGACAGCGGAAAATCGCGTGGTATGGCTGTCTGAGTATT
CTTACGTTGGCACCGACAACAAGACGCAAATGGAGAATTGTGGTTGCAAA
CCGGTCCCGGGTAAGAAGAGTCTCTGCGTGAGGTGCGGCTGTCGAAAAGC
AGGAAGGAAATGCTAGCTGGCATTGGTGCGCAGGGCCACCTATGGACTGA
TTCGCGCGGCGGAACCTGAGGCTCGGATCGCTGCTGTTACATCCAGCGGT
CCTGCTGCGCCCACTGTTCCTGCTACACCCTCCATTCCTACAACATCTGT
AATCGTAGCCGAAGCCCTGCGTTCTCTTTTGGCGGTACGAGCCGGTAGTC
AACGCAGCCGCACAGGCAGTCGCTAAGCAGCAGGCAGCCCCGCCGGGTGA
TTCAACAGGGACCGAAGGACAAGGACGGGGAGTAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAAAACGAAGGGGGGGGGGTTGTACTCATAGTCGTGCA
TGCCGTCGTTAGACCATTGACCTCGCATCCCTACAAAACCAGGACGGAGC
ACGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCGNNNNNN
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NNNACCAACTTCTCGACCATAAACTGAGGGTGCGGCAGGGATTTGCGTGA
TTGTGGCCCGATTTCATCGTATGAGAACGTACTACGGCGCGCAGAACGCC
GAAGCGAATCCCACCCAGGTGACCTTAGTCCACATTAACCAACCCCCATG
CTTACCGCCTGCGCTTCCCGTTGTTTGCCTTTGCTGCTTTTGCTTGTGTG
TGACAAAATGGTGGCAGTGACGACGACAGGTTCCTCCGTGCTAAATAGCG
TATGGTGGAGAAGGAGGAGACCTTGGAGAACAGGGTGTGGG

Coding sequence (CDS) from alignment at Scaffold_94:128074..131964+

>EsuBft94_23a-0001 ID=EsuBft94_23a-0001|Name=EsuBft94_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=696bp|location=Sequence derived from alignment at Scaffold_94:128074..131964+ (Ectocarpus subulatus male Bft15b)
ATGGGAAGAGACCACGAGCAGTTGCCCATAGTGACGGAAGCAAGAGACAG
AGGAAGCCGCGCGCGAAGGTATGGGTCACCACTACTCCCGGCGAGCCATG
TAACCTGTGCCCACGGGGGGAGCAATTGGCAGGAGAGAAACTGTATGCTG
CATGTCACAGGTCGGCAGATGAGAAGGACTTCACGCATATCGCCAGTCGC
AGTTCTACGGCTAGAGATCCCTGCGACGGACTCCGATTTCCAGGGTTGGA
TTCCCGACGACGACGAGAAGGTACGCCTTTTTGTCCTCGTCTACCTGCTT
GCTGGTTGCGACTTCCTGCCTGCCATATCGGGCCTGCCTTTCGGGACCAT
GTGGGCTCTTACTCTGAAGAGCGTGCGGACGGAGGGTGTGTTTCGCACGT
ACATCTGCGCGCGCGAGGGTGGGGAATGGGGCATCAAGACTGACGAGTGC
ATCAAGTTGTTGGCGAACATATTCTACTTTAAGTATGAAGCTTCCTTTAC
TCGTGGTGGGCAGGAACCCGGCTGGATTTTCCGCACGGACAACGGCGATG
TCGCACATTACGTCGACGTCATTCGGATGCTTATCCTCAGGCGTGGTTCA
AAGAAGGCTACATCAACGTGCCCTTGTTCGAGTCCGTGCACCAGCAGAGC
GAGCGAGGCCATCAAGTGCTTGGGTACTGGCGAGATGGCTGTTTAG