EsuBft94_21a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft94_21a-0001
Unique NameEsuBft94_21a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_94contigScaffold_94:153077..154328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSJ6
ProteomeIdEsuBft94_21
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2880.D7FSJ6|-
Length60
Hectar predicted targeting categoryother localisation
Evalue3.17e-92
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft94_21aEsuBft94_21aEctocarpus subulatus male Bft15bgeneScaffold_94 153077..154328 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft94_21a-0001-exonagat-exon-104184Ectocarpus subulatus male Bft15bexonScaffold_94 153077..153469 +
EsuBft94_21a-0001-exonEsuBft94_21a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_94 154060..154243 +
EsuBft94_21a-0001-exonagat-exon-104185Ectocarpus subulatus male Bft15bexonScaffold_94 154297..154328 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft94_21a-0001-cdsEsuBft94_21a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_94 153077..153469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft94_21a-0001EsuBft94_21Ectocarpus subulatus male Bft15bpolypeptideScaffold_94 153077..154328 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft94_21a-0001 ID=EsuBft94_21a-0001|Name=EsuBft94_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=609bp|location=Sequence derived from alignment at Scaffold_94:153077..154328+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCCTGGCATGTGACAGTACTAAGCCATTGACAGTCGAGGGTGT
GGACTACAGTGTGGCGGACCTTTACAACGCCATGGAGAAGGAAGACCAAA
CGGAACTGGCGGATTCTGCCGGCGGGAGTGCTCCCACTGGTAGTTCGTCG
ACGGGTGGTGCAGTCGGACCGGACGGGGGTGGTTCCGCCGGAGGGAGTGG
CAGCAACACGGAGCGTAAAGGCCCACACTGCATGATGCGGCTCGTTGGGA
TCCTGTGCGAAGACTCCATCCGCCCGCTCGTCATGAACAGTCGCTTGCAG
GCGACCCGGCAGGAGCTGGACACCTCAGCAGGTGGGCCGCGGAACAATTT
GTGGACAGAGGTCACCGACCGCTTCCGAGACCCTGGCTACCATGTGAGAA
AAGTCGTGGACGACGAACAAGTGAGTCACGTCAACCCGAACATCATCCAG
CAACCAAACATCTCGGCGGAAAAGATTACCAAGATGTGGTCTGCGGCAAA
GGCGAAATGGAACACGCCTTTTGCTAACTGGAAGAGTGAATCCGGTAACA
ACCAGCCATGGCTTTCATTTTGTCAAGGAACCTTGGGCGATTTTGTGGCC
GTGGCATAA
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protein sequence of EsuBft94_21a-0001

>EsuBft94_21 ID=EsuBft94_21|Name=EsuBft94_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=202bp
MVALACDSTKPLTVEGVDYSVADLYNAMEKEDQTELADSAGGSAPTGSSS
TGGAVGPDGGGSAGGSGSNTERKGPHCMMRLVGILCEDSIRPLVMNSRLQ
ATRQELDTSAGGPRNNLWTEVTDRFRDPGYHVRKVVDDEQVSHVNPNIIQ
QPNISAEKITKMWSAAKAKWNTPFANWKSESGNNQPWLSFCQGTLGDFVA
VA
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mRNA from alignment at Scaffold_94:153077..154328+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft94_21a-0001 ID=EsuBft94_21a-0001|Name=EsuBft94_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1252bp|location=Sequence derived from alignment at Scaffold_94:153077..154328+ (Ectocarpus subulatus male Bft15b)
ATGGTCGCCCTGGCATGTGACAGTACTAAGCCATTGACAGTCGAGGGTGT
GGACTACAGTGTGGCGGACCTTTACAACGCCATGGAGAAGGAAGACCAAA
CGGAACTGGCGGATTCTGCCGGCGGGAGTGCTCCCACTGGTAGTTCGTCG
ACGGGTGGTGCAGTCGGACCGGACGGGGGTGGTTCCGCCGGAGGGAGTGG
CAGCAACACGGAGCGTAAAGGCCCACACTGCATGATGCGGCTCGTTGGGA
TCCTGTGCGAAGACTCCATCCGCCCGCTCGTCATGAACAGTCGCTTGCAG
GCGACCCGGCAGGAGCTGGACACCTCAGCAGGTGGGCCGCGGAACAATTT
GTGGACAGAGGTCACCGACCGCTTCCGAGACCCTGGCTACCATGTGCGTG
CTGGGGGTACGGGGTTGATTAGCACGCATCGGACGAGAACGTTTACAAAG
ACAGCAGTCGAAGTGTAGGTTGACAACTCATGCCGTTTATTGATACTTGT
GTTAGCCATGGTACTCAACGCCTCATAACGTCCACGGGCGATCGCCATCG
TTTCAGGCAAAAGGCTATTGGGTATCCAACCCCAAGAGCGGGTCAACCTG
CTGTTGACGTCTACCGGTAACTTGTGTAGTTGTTGCTGACGCCGACGACC
ACACTGCTGTAGTTGCTTCGTTAGCCTATTATAGTGAAAGACATTGAAAA
CGCGCTGGAATCATTCAAAGGAATGCGTAGATAGCCAGACAATATTTTAT
GCCAGAAAGAACATAACAGGTCGGGACCAGGCCGATATCGGCCCTTCCCG
CGCGAGGGGTGCATTCCCCGTTCGTCTTTTTTTTTCGTGTCGCAATCGTG
TTAATTTCCTCGCACGTCCGGGGGGGCGTCGTCGTTGTAGGTAGGTTTAA
AGAACCCGTGTATGATCTGCGTTGCCCCTTCCCTCGCTCCCTCGCTGTAT
GCCGGACCTATGGGTGATGTGGACGTTTTTTAGGTGAGAAAAGTCGTGGA
CGACGAACAAGTGAGTCACGTCAACCCGAACATCATCCAGCAACCAAACA
TCTCGGCGGAAAAGATTACCAAGATGTGGTCTGCGGCAAAGGCGAAATGG
AACACGCCTTTTGCTAACTGGAAGAGTGAATCCGGTAACAACCAGCCATG
GCTTTCATTTTGTCAAGGTAAGAGATGGATGACGTGGGGCTGGGTATAAA
ATAGCGTCTGTTTGCTCCAGGAACCTTGGGCGATTTTGTGGCCGTGGCAT
AA
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Coding sequence (CDS) from alignment at Scaffold_94:153077..154328+

>EsuBft94_21a-0001 ID=EsuBft94_21a-0001|Name=EsuBft94_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=609bp|location=Sequence derived from alignment at Scaffold_94:153077..154328+ (Ectocarpus subulatus male Bft15b)
ATGGTCGCCCTGGCATGTGACAGTACTAAGCCATTGACAGTCGAGGGTGT
GGACTACAGTGTGGCGGACCTTTACAACGCCATGGAGAAGGAAGACCAAA
CGGAACTGGCGGATTCTGCCGGCGGGAGTGCTCCCACTGGTAGTTCGTCG
ACGGGTGGTGCAGTCGGACCGGACGGGGGTGGTTCCGCCGGAGGGAGTGG
CAGCAACACGGAGCGTAAAGGCCCACACTGCATGATGCGGCTCGTTGGGA
TCCTGTGCGAAGACTCCATCCGCCCGCTCGTCATGAACAGTCGCTTGCAG
GCGACCCGGCAGGAGCTGGACACCTCAGCAGGTGGGCCGCGGAACAATTT
GTGGACAGAGGTCACCGACCGCTTCCGAGACCCTGGCTACCATGTGAGAA
AAGTCGTGGACGACGAACAAGTGAGTCACGTCAACCCGAACATCATCCAG
CAACCAAACATCTCGGCGGAAAAGATTACCAAGATGTGGTCTGCGGCAAA
GGCGAAATGGAACACGCCTTTTGCTAACTGGAAGAGTGAATCCGGTAACA
ACCAGCCATGGCTTTCATTTTGTCAAGGAACCTTGGGCGATTTTGTGGCC
GTGGCATAA
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