EsuBft94_20a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft94_20a-0001
Unique Name	EsuBft94_20a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_94	contig	Scaffold_94:156270..157369 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4792.ETI53028
ProteomeId	EsuBft94_20
Protein domains	IPR027806
Protein domains	PTHR22930
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	4776\|Peronosporales
Length	110
Hectar predicted targeting category	other localisation
Evalue	1.31e-17
EggNOG OGs	KOG4585@1\|root,KOG4585@2759\|Eukaryota,3QI3U@4776\|Peronosporales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	nuclease activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft94_20a	EsuBft94_20a	Ectocarpus subulatus male Bft15b	gene	Scaffold_94 156270..157369 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_20a-0001-exon	EsuBft94_20a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 156270..157369 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_20a-0001-exon	agat-five_prime_utr-15224	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_94 156270..156668 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_20a-0001-cds	EsuBft94_20a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_94 156669..157253 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_20a-0001-exon	agat-three_prime_utr-23403	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 157254..157369 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_20a-0001	EsuBft94_20	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_94 156669..157253 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_94:156270..157369+
coding sequence from alignment at Scaffold_94:156270..157369+

spliced messenger RNA

>EsuBft94_20a-0001 ID=EsuBft94_20a-0001|Name=EsuBft94_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1100bp|location=Sequence derived from alignment at Scaffold_94:156270..157369+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGGT
CTGTTCATCAAGGCCAAGGCTCCGTGTGCGAAAGACACCGCCAACGTCAT
CGCGTACTACTTTGGCAGCAAGTCCGCGTACGGCATCAACGTTCAAGCGA
TGTGCACCGCCGACTACCGGTTCTGCGCAATGTCGGCGATATCTCCAGCC
TCGGCGAACGACTGGGTGGCATGGAATCGATCTTCCCTCGCCAAGGCCGT
CGCCCGCTTGCCCGCCGGATTTCACATCATTGGTGACGCCGCCTACCCCA
TCGGAGAAAAGCGTCTGACTCCGTGCCCTGGGAGGCAACTGCCGGCGGGC
GAGGACTCGTTCAACTTCCACCTGAGCCAGCTTCGTGTAAAGATCGAGCA
GAGCTTCGGCATCCTGGTTTCGACTCGGGGCATTCCGTGGAGACCTCTCC
GCGTGCAGTTCGCAGGACGGGCGGATCTCATCACAGCTCTTTTTCATCTG
CACAACTTCCTGCAAGACGAGAAGGTAGCGCCGATCCAGCTTGCAGAGGA
GGACTCCCGCAGCGGACGCAACCGACCGGCCCTCTGTGCTACCCAGCGCA
CCTTGCCGAATGGCTGGGAAACGGAGCCGGCTCCTTTGAGGAGCGGTGAG
ACCCCGGCCCGAGCGGCTATCCGCAAGGCCCTGGGGTTGAAGAAGCAGTG
GAGGCCGAACTACAACCGCCAGAGGAATTCGTAAGGACGTATCCAGCTCT
GGCGGCATAGCGTGGCGGGCGCACGAGGGGGGAGCGGACGGGTCAACATA
GGTGCGGATGGAGTCGGATGGGGGGAAGGTCGCTACTACAAGCGGGCGAG

protein sequence of EsuBft94_20a-0001

>EsuBft94_20 ID=EsuBft94_20|Name=EsuBft94_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MCTADYRFCAMSAISPASANDWVAWNRSSLAKAVARLPAGFHIIGDAAYP
IGEKRLTPCPGRQLPAGEDSFNFHLSQLRVKIEQSFGILVSTRGIPWRPL
RVQFAGRADLITALFHLHNFLQDEKVAPIQLAEEDSRSGRNRPALCATQR
TLPNGWETEPAPLRSGETPARAAIRKALGLKKQWRPNYNRQRNS

mRNA from alignment at Scaffold_94:156270..157369+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft94_20a-0001 ID=EsuBft94_20a-0001|Name=EsuBft94_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1100bp|location=Sequence derived from alignment at Scaffold_94:156270..157369+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGGT
CTGTTCATCAAGGCCAAGGCTCCGTGTGCGAAAGACACCGCCAACGTCAT
CGCGTACTACTTTGGCAGCAAGTCCGCGTACGGCATCAACGTTCAAGCGA
TGTGCACCGCCGACTACCGGTTCTGCGCAATGTCGGCGATATCTCCAGCC
TCGGCGAACGACTGGGTGGCATGGAATCGATCTTCCCTCGCCAAGGCCGT
CGCCCGCTTGCCCGCCGGATTTCACATCATTGGTGACGCCGCCTACCCCA
TCGGAGAAAAGCGTCTGACTCCGTGCCCTGGGAGGCAACTGCCGGCGGGC
GAGGACTCGTTCAACTTCCACCTGAGCCAGCTTCGTGTAAAGATCGAGCA
GAGCTTCGGCATCCTGGTTTCGACTCGGGGCATTCCGTGGAGACCTCTCC
GCGTGCAGTTCGCAGGACGGGCGGATCTCATCACAGCTCTTTTTCATCTG
CACAACTTCCTGCAAGACGAGAAGGTAGCGCCGATCCAGCTTGCAGAGGA
GGACTCCCGCAGCGGACGCAACCGACCGGCCCTCTGTGCTACCCAGCGCA
CCTTGCCGAATGGCTGGGAAACGGAGCCGGCTCCTTTGAGGAGCGGTGAG
ACCCCGGCCCGAGCGGCTATCCGCAAGGCCCTGGGGTTGAAGAAGCAGTG
GAGGCCGAACTACAACCGCCAGAGGAATTCGTAAGGACGTATCCAGCTCT
GGCGGCATAGCGTGGCGGGCGCACGAGGGGGGAGCGGACGGGTCAACATA
GGTGCGGATGGAGTCGGATGGGGGGAAGGTCGCTACTACAAGCGGGCGAG

Coding sequence (CDS) from alignment at Scaffold_94:156270..157369+

>EsuBft94_20a-0001 ID=EsuBft94_20a-0001|Name=EsuBft94_20a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_94:156270..157369+ (Ectocarpus subulatus male Bft15b)
ATGTGCACCGCCGACTACCGGTTCTGCGCAATGTCGGCGATATCTCCAGC
CTCGGCGAACGACTGGGTGGCATGGAATCGATCTTCCCTCGCCAAGGCCG
TCGCCCGCTTGCCCGCCGGATTTCACATCATTGGTGACGCCGCCTACCCC
ATCGGAGAAAAGCGTCTGACTCCGTGCCCTGGGAGGCAACTGCCGGCGGG
CGAGGACTCGTTCAACTTCCACCTGAGCCAGCTTCGTGTAAAGATCGAGC
AGAGCTTCGGCATCCTGGTTTCGACTCGGGGCATTCCGTGGAGACCTCTC
CGCGTGCAGTTCGCAGGACGGGCGGATCTCATCACAGCTCTTTTTCATCT
GCACAACTTCCTGCAAGACGAGAAGGTAGCGCCGATCCAGCTTGCAGAGG
AGGACTCCCGCAGCGGACGCAACCGACCGGCCCTCTGTGCTACCCAGCGC
ACCTTGCCGAATGGCTGGGAAACGGAGCCGGCTCCTTTGAGGAGCGGTGA
GACCCCGGCCCGAGCGGCTATCCGCAAGGCCCTGGGGTTGAAGAAGCAGT
GGAGGCCGAACTACAACCGCCAGAGGAATTCGTAA