EsuBft94_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft94_19a-0001
Unique Name	EsuBft94_19a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_94	contig	Scaffold_94:163340..164769 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft94_19
Protein domains	IPR018586
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	127
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft94_19a	EsuBft94_19a	Ectocarpus subulatus male Bft15b	gene	Scaffold_94 163340..164769 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_19a-0001	EsuBft94_19	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_94 163717..164226 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_19a-0001-exon	EsuBft94_19a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 163340..164566 +
EsuBft94_19a-0001-exon	agat-exon-104183	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 164721..164769 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_19a-0001-exon	agat-five_prime_utr-15223	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_94 163340..163716 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_19a-0001-cds	EsuBft94_19a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_94 163717..164226 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_19a-0001-exon	agat-three_prime_utr-23401	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 164227..164566 +
EsuBft94_19a-0001-exon	agat-three_prime_utr-23402	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 164721..164769 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_94:163340..164769+
coding sequence from alignment at Scaffold_94:163340..164769+

spliced messenger RNA

>EsuBft94_19a-0001 ID=EsuBft94_19a-0001|Name=EsuBft94_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1276bp|location=Sequence derived from alignment at Scaffold_94:163340..164769+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCTCTGCCAAGACCCCGATATGTGCGATCCTAACATTGAACACCACAGG
GGATAGCAGCACTTCGCGTGTATGGTATTGCTGCAACACGATCACAACAC
AATCAACAGACAAGCTAGTAGCTGCACACACAAACGAGTCTCGGGGAATT
GCCACCACAACAGTTCCGTGGCGGAGAAATACCGGCGGAAAATCGGGAAA
ATGCCCGGGACGGAGCTGCGGGCTCGACCACACGCAACGCGCGGCTACGA
TGTCGGAGGGTGCAAGCGCGGGACCTGCCGACGCCTCACAGGCCTCACAG
GCTAGTGCCGACGGTCCTCTGCGGATCAGGGAGCTGCCGCTGCGGACCCG
AAGGCAACCGGCGAGGCTATCGATGAGATGCTAGCCGCCGACGACCCCGT
CAAAAACAGCAACGGCAAACGCGCGTACCCGGAGCCCAACTTCCCGATCG
AGCGGTCGGGAGCAGTGAGAGAGAAAGGGAGCTACCCCATCGGGTTCAAA
CTTAACGCGGCGGCCTACACACGGGAGATCTGCCCGTGCGACGGTCAACC
GGTGGGAAACAACAGCGCGGCGAAAGTTCTCCAGGTGCCTCGGAAGCGTA
TCATCGAGTGGCTGAAGCAGGAGGAGCAGCTCAGGGAGAAGGTCAGCGCC
AACCTCAAGCTTTCGAAGGCCAAGCAGGTTCACGGCGGAGGGAAAGCTTC
GACAGTCGACGCCGAACAAGCCCTTGGGGGCTACATCAACGAGCAGCGCA
AGCAGCACCGCGGTTGTTGTAATCGGGAGGTGATGAACAAGCTGCTCGAG
CTGAAGCCTGACGCCCTTGGCGGGATGCCGGCGAACGCGAAACCGGAGGA
GGCGCTGGCTTGCAAGGTCAAATTCAACAACTGGTAGCAACGGTTCCGCA
AGCGGAATGGGTTCAGCATCCGCCGGCGTACCAGCGTGGGCCAGAAACTA
CCGAAGAGGTACGAGGGTATGGCGTGGGCGACGGTGATGAAGCTGCGCGA
GGCTCTCGTAAAGCGCGCCGGTGAGGTCTACGCTCGGCGCCACCCGCCGG
CACCTGACGAGAGCCCCATCAAAGGGAAGGATCTGAGTTCCGAGCAGCTG
ACGTCTGTGGAGGCGGAGGTTTTCGAGGAACTCGGCAACATGGACCATAC
GCCAGTCTAGCACGAGATGCCGGTGGAGACCACTTTGGAGAAGACCGGTG
CGAAGGATGCTCGCATCAGCACAGGAGGCAAAGAGAAGGAACGCTTCACG
CTCGTTCTGGCTGTCATGGCGGACAG

protein sequence of EsuBft94_19a-0001

>EsuBft94_19 ID=EsuBft94_19|Name=EsuBft94_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=169bp
MLAADDPVKNSNGKRAYPEPNFPIERSGAVREKGSYPIGFKLNAAAYTRE
ICPCDGQPVGNNSAAKVLQVPRKRIIEWLKQEEQLREKVSANLKLSKAKQ
VHGGGKASTVDAEQALGGYINEQRKQHRGCCNREVMNKLLELKPDALGGM
PANAKPEEALACKVKFNNW

mRNA from alignment at Scaffold_94:163340..164769+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft94_19a-0001 ID=EsuBft94_19a-0001|Name=EsuBft94_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1430bp|location=Sequence derived from alignment at Scaffold_94:163340..164769+ (Ectocarpus subulatus male Bft15b)
CCCTCTGCCAAGACCCCGATATGTGCGATCCTAACATTGAACACCACAGG
GGATAGCAGCACTTCGCGTGTATGGTATTGCTGCAACACGATCACAACAC
AATCAACAGACAAGCTAGTAGCTGCACACACAAACGAGTCTCGGGGAATT
GCCACCACAACAGTTCCGTGGCGGAGAAATACCGGCGGAAAATCGGGAAA
ATGCCCGGGACGGAGCTGCGGGCTCGACCACACGCAACGCGCGGCTACGA
TGTCGGAGGGTGCAAGCGCGGGACCTGCCGACGCCTCACAGGCCTCACAG
GCTAGTGCCGACGGTCCTCTGCGGATCAGGGAGCTGCCGCTGCGGACCCG
AAGGCAACCGGCGAGGCTATCGATGAGATGCTAGCCGCCGACGACCCCGT
CAAAAACAGCAACGGCAAACGCGCGTACCCGGAGCCCAACTTCCCGATCG
AGCGGTCGGGAGCAGTGAGAGAGAAAGGGAGCTACCCCATCGGGTTCAAA
CTTAACGCGGCGGCCTACACACGGGAGATCTGCCCGTGCGACGGTCAACC
GGTGGGAAACAACAGCGCGGCGAAAGTTCTCCAGGTGCCTCGGAAGCGTA
TCATCGAGTGGCTGAAGCAGGAGGAGCAGCTCAGGGAGAAGGTCAGCGCC
AACCTCAAGCTTTCGAAGGCCAAGCAGGTTCACGGCGGAGGGAAAGCTTC
GACAGTCGACGCCGAACAAGCCCTTGGGGGCTACATCAACGAGCAGCGCA
AGCAGCACCGCGGTTGTTGTAATCGGGAGGTGATGAACAAGCTGCTCGAG
CTGAAGCCTGACGCCCTTGGCGGGATGCCGGCGAACGCGAAACCGGAGGA
GGCGCTGGCTTGCAAGGTCAAATTCAACAACTGGTAGCAACGGTTCCGCA
AGCGGAATGGGTTCAGCATCCGCCGGCGTACCAGCGTGGGCCAGAAACTA
CCGAAGAGGTACGAGGGTATGGCGTGGGCGACGGTGATGAAGCTGCGCGA
GGCTCTCGTAAAGCGCGCCGGTGAGGTCTACGCTCGGCGCCACCCGCCGG
CACCTGACGAGAGCCCCATCAAAGGGAAGGATCTGAGTTCCGAGCAGCTG
ACGTCTGTGGAGGCGGAGGTTTTCGAGGAACTCGGCAACATGGACCATAC
GCCAGTCTAGCACGAGATGCCGGTGGAGACCACTTTGGAGAAGACCGGTG
CGAAGGATGCTCGCATCAGCACAGGAGGTGAGAGCGAGCTAATATTTTTG
TCAAAATTTTGTGTGGTGTGCGGATTTTTTGTCGTTGGACAATTTTTTAA
GACACATGTTTTTTTATTGCGTGCCGGTACACGGTGCGNCCCCCCCCCTC
CCCTCGCGTTGATTTTTCCCCCTCCCCTCAGGCAAAGAGAAGGAACGCTT
CACGCTCGTTCTGGCTGTCATGGCGGACAG

Coding sequence (CDS) from alignment at Scaffold_94:163340..164769+

>EsuBft94_19a-0001 ID=EsuBft94_19a-0001|Name=EsuBft94_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=510bp|location=Sequence derived from alignment at Scaffold_94:163340..164769+ (Ectocarpus subulatus male Bft15b)
ATGCTAGCCGCCGACGACCCCGTCAAAAACAGCAACGGCAAACGCGCGTA
CCCGGAGCCCAACTTCCCGATCGAGCGGTCGGGAGCAGTGAGAGAGAAAG
GGAGCTACCCCATCGGGTTCAAACTTAACGCGGCGGCCTACACACGGGAG
ATCTGCCCGTGCGACGGTCAACCGGTGGGAAACAACAGCGCGGCGAAAGT
TCTCCAGGTGCCTCGGAAGCGTATCATCGAGTGGCTGAAGCAGGAGGAGC
AGCTCAGGGAGAAGGTCAGCGCCAACCTCAAGCTTTCGAAGGCCAAGCAG
GTTCACGGCGGAGGGAAAGCTTCGACAGTCGACGCCGAACAAGCCCTTGG
GGGCTACATCAACGAGCAGCGCAAGCAGCACCGCGGTTGTTGTAATCGGG
AGGTGATGAACAAGCTGCTCGAGCTGAAGCCTGACGCCCTTGGCGGGATG
CCGGCGAACGCGAAACCGGAGGAGGCGCTGGCTTGCAAGGTCAAATTCAA
CAACTGGTAG