EsuBft94_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft94_14a-0001
Unique Name	EsuBft94_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_94	contig	Scaffold_94:203230..206807 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft94_14
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	319
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-06_001970.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft94_14a	EsuBft94_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_94 203230..206807 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_14a-0001-exon	EsuBft94_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 203230..205725 -
EsuBft94_14a-0001-exon	agat-exon-104164	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 205836..205894 -
EsuBft94_14a-0001-exon	agat-exon-104163	Ectocarpus subulatus male Bft15b	exon	Scaffold_94 206168..206807 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_14a-0001-exon	agat-three_prime_utr-23395	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_94 203230..205173 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_14a-0001-cds	EsuBft94_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_94 205174..205725 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft94_14a-0001	EsuBft94_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_94 205174..206807 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_94:203230..206807-
coding sequence from alignment at Scaffold_94:203230..206807-

spliced messenger RNA

>EsuBft94_14a-0001 ID=EsuBft94_14a-0001|Name=EsuBft94_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3195bp|location=Sequence derived from alignment at Scaffold_94:203230..206807- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATCGACGCTTTAGAAAGCTCGAGACGCAGCAGTGGTCAACAGAT
CGGGGAGAACCGCCTCCCTGCCGCAGCTGAAGGCGGCAAAAAAGACGGAG
TTGGAGTGGGAGGTAGCAATGCGTCAGTTCCTACTTTCGAGTTCAAGGAA
TACTCGGACTCGGCGAGCCATGATGAAAACAACGATACAGCGGAGGCGAA
AGAGAGCGCTGAAACAAAACTACCCGAAGATGAAGAAGAGAGCGGAGACG
ACGACTGGCACCGAACGGCGTCCGACCAAGAACACGAGATGGATGTGGCG
CAGCAGAAGAAAAACAGACGGACACGGGCTCAGCCCGGAGCGAAACGGGG
AGGGCGACGAGACACTGAAAGAGGTGGTTGGTTCCAGTTGTTAGGACGGA
AGAAGACTCAGTTCGAGCCCGGTGATCTCGTCGAGGCCGAGTGGGCTGGA
ACTGGGTGGTGGTACGTGGGGTACATCAGGTCCGCGTCTGAGGAGCGGGG
AGAAGAATCTGCGGGTGGTACGCCTGGCGCACCACAAGCGAAAACTTCGA
AACGAAGTAAAGAGTTATTTCACGTCGTGTTTGAAGACGGTGACGAGGCG
GACGTTATCAGGAGAGACTTGAAGCGATTGCAACCAACAGTCCACCTATT
CGTGGGTAGCTTGTCTCATTTGTGTTTTCCGGCTGACGTTGGGCTCAAGG
GTCAGGAGGGGAGAGGGGAGAGCGGGCGAAACCGTAACAACAACCTGGGT
CGCAACGCGAAGAAGCACTCTTCCATCGGCAAACAGCGAGACACAGAAGA
GGATGCGGCATCATCATCGCTCGTCCGAAAGGGAAGCTTGGGGGACGTGG
ACAATCGGCTTCGCCAGGGCGAAAAAGCGCTGTGGGGCCGTCGCGGCTCT
CCAAGTGTTGGCTCTCCGGCCGACGCCAGCGGGAATGGCGGTGACAGTCC
ACGTTGGGACTGGTGGGAGACCGGTACGCCGTACGCGTTCCAGCCACGCC
TTGCTGCGGCCAAGGCAACCGTGATGGCTTTCGTCGAGGACGATGGCGAT
GATGGCCGGACGCCATCGAGAACCAACAGCACTGCCTCGGGGTTAATGCT
GCCGCATCAACAGCAACGGCGGCCCCTACAGGGTGGCGGCGGGAGGAGCC
ACTTGGGCGCGTCCAGGGGTTCGAGCGGGGAGTTGTTGCGCATCGTGAAG
GCGCCAGAGACCAACGAAAGCCACGGGCAAAGGGTCTTCTTCCTAGCTTG
ATCTAGAAAGCGCGTTCTGTCTGTAGCGAGCAAAAATAGCAGGCTGGAAG
GCGTTTGACCCCCTTCCCAACCAAATACAAGAGCAGGCAGCACGGCCGCC
TTGCATACAAGTTGGCAATTCATCAGGCACGTCACGCTAGTAACCTAGTA
ACCAAGGCCAAAATCTACCCTGCAAAATGAACAGGCCCTTCGGGTAATGG
TTACCAGTGGCGCGGGTACAACAAAAAGCTTCAGACCTCGCGAGCGCACG
ACTACCCTCTTGAGTGTACAATACCACCGAACCTGTCGTTTTTGGTTCCC
AGATAGCTCGTGCTCTGGGTACAACGTGTTGGGCCTATATCTTGCCTAGT
CAAGGTGTAGGGTATGTCAGTACAGTGCGTCATCCAGCAAATACGGTGTG
TTTTGCGCAGAAAATAGCCTAACGTAAATTCAAATATAAATATCACTTGA
ACAGACAACCATTTCTTCCCTTCTTCCGATGGAGGGCACCAAGAAGGGAT
CCATCCGTACTGTAGCAAAGGCCACGACAACGCACTTGACCCACGATAAC
CACCACCCTTACCGTACAGTCGATCAATGTTTTCCACACTTGAACGCCCT
CATCACGCAGACACACAAGCCAAGAATTTATTTGTTGCGCTGACTGCAAC
ACACACCGGCGGTAGTTCCGCTCCTATCCCGAACACAGAACACAGAACCT
AGCGTATTGAATATCGCCTCCCAACTCATCAACCGGCACAACAATAATTT
TGGGGAAATGAAAGCAGCGACCTCGGCACACTCGCTTCCCACGCCCAGGA
AAACGAACCTAGAACATATCCGGCGGCCAGGATGCAGAAACAGGAGAAGA
ACAGGGCCCCCTCGAAGGCCGTGGTGTACGTCCCTGTTGTCTACCGTTTG
CTACCACATCTATCACATGATTCAGCCGTGCCACACGCCGCACACTATGA
AACCTCACAGCCAATACGCGCACACGACCACAAAGACACGAGACCCCGCT
TCGAGGGGTTTGAACGGAAATCACACTTCTTTGAACGACCCCCATCGAAC
TAACCAATGTCACGACTGAATTATCGACCACATCACTACACTTGCAATAG
AATACCACTAAATAGATCATACCTCTCACCAAGAATAACGTTTACCCCGC
CAAAGCAGACGGCATCCAGACACCCAACTCACGGGGGGTTTTGATGGCCG
ATTCGTTATGAACAGCGATCGCCGCCGTCTGTATGGATACAAGCACAAAC
CACGAAGTGAGCTCAAAAGCACTGTAGAAAGATAACATACACCCCCATAC
CCCTATTGCACTGCGCCGCCTGTTTTTCCCTCCCAAATACCCCGCCCCCC
CCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCGCCTCCC
CCCGAGCAAGCTTTCATCAACGTCTATCGCCATGCTCAAAGACAGCGATC
AAGCTTCTGAATAGCCTGGTGTTTTTGTGCCACAGCCTCTCCGCTGCACC
AGAAAAACACATCAAATAACGAAATACGCTAATAGTTACCCCACCCCATA
CTTCTACATTTTCTCCACGACAAAAGCAGAACTCACCCAACGTAAAGCGG
GAAGCCGAACCGCCGCTGCAGGGCTTTCTCTCGTCCTTCTAGACAAGCGG
CTACACGGCGTTCATCCCGAGCAGCCAGCTTGCTAGAGAAGCGCATCTAC
GACCGACTTCGTCTCTGCGCAATATTACTACAACGCCGTGCCTCGACTGG
CGCTGACGAGGCACCTGCATGAGCGCTGAGCGGTTTCACAACCACTCCTG
CACCGCGACCGCTGTTTCAGTCGAGCAGTACCCCCCAACTCCCGGACATC
CCAGAATCCAGATGACGTCAAAGACAATCATCACACCCCGTCCCC

protein sequence of EsuBft94_14a-0001

>EsuBft94_14 ID=EsuBft94_14|Name=EsuBft94_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=416bp
MAIDALESSRRSSGQQIGENRLPAAAEGGKKDGVGVGGSNASVPTFEFKE
YSDSASHDENNDTAEAKESAETKLPEDEEESGDDDWHRTASDQEHEMDVA
QQKKNRRTRAQPGAKRGGRRDTERGGWFQLLGRKKTQFEPGDLVEAEWAG
TGWWYVGYIRSASEERGEESAGGTPGAPQAKTSKRSKELFHVVFEDGDEA
DVIRRDLKRLQPTVHLFVGSLSHLCFPADVGLKGQEGRGESGRNRNNNLG
RNAKKHSSIGKQRDTEEDAASSSLVRKGSLGDVDNRLRQGEKALWGRRGS
PSVGSPADASGNGGDSPRWDWWETGTPYAFQPRLAAAKATVMAFVEDDGD
DGRTPSRTNSTASGLMLPHQQQRRPLQGGGGRSHLGASRGSSGELLRIVK
APETNESHGQRVFFLA

mRNA from alignment at Scaffold_94:203230..206807-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft94_14a-0001 ID=EsuBft94_14a-0001|Name=EsuBft94_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3578bp|location=Sequence derived from alignment at Scaffold_94:203230..206807- (Ectocarpus subulatus male Bft15b)
ATGGCAATCGACGCTTTAGAAAGCTCGAGACGCAGCAGTGGTCAACAGAT
CGGGGAGAACCGCCTCCCTGCCGCAGCTGAAGGCGGCAAAAAAGACGGAG
TTGGAGTGGGAGGTAGCAATGCGTCAGTTCCTACTTTCGAGTTCAAGGAA
TACTCGGACTCGGCGAGCCATGATGAAAACAACGATACAGCGGAGGCGAA
AGAGAGCGCTGAAACAAAACTACCCGAAGATGAAGAAGAGAGCGGAGACG
ACGACTGGCACCGAACGGCGTCCGACCAAGAACACGAGATGGATGTGGCG
CAGCAGAAGAAAAACAGACGGACACGGGCTCAGCCCGGAGCGAAACGGGG
AGGGCGACGAGACACTGAAAGAGGTGGTTGGTTCCAGTTGTTAGGACGGA
AGAAGACTCAGTTCGAGCCCGGTGATCTCGTCGAGGCCGAGTGGGCTGGA
ACTGGGTGGTGGTACGTGGGGTACATCAGGTCCGCGTCTGAGGAGCGGGG
AGAAGAATCTGCGGGTGGTACGCCTGGCGCACCACAAGCGAAAACTTCGA
AACGAAGTAAAGAGTTATTTCACGTCGTGTTTGAAGACGGTGACGAGGCG
GACGTTATCAGGAGAGACTTGAAGCGATTGCAACCAACAGGTAAACAGGA
TCAGATACTTTCAGCACCTTGAGAGATTGCATGGTGTTTACCCCCCATCT
GTAGAGGAGGTTACTGAAAAAGTATCCACGTCAGGCCACGTGCGTCGCAC
CCTTGTAATGCTACCCTTTAGTCCCAACTCCGGCGGACGTCATAACCAAT
CGTCAGTGTGAGCAATTAAATGTATCTCGCGGATGCCCTTGTCGAAGCCT
GATGCACATTTTCTTTGACGATGTTGAGTGGACTTCAATCTTCACAAAAC
AACCAAAAAATAGTCCACCTATTCGTGGGTAGCTTGTCTCATTTGTGTTT
TCCGGCTGACGTTGGGCTCAAGGTACGCCCAGAGCAAGCAGTGGTGTGAC
CACGTTGCCACGACACGTGCCGGTTGCCGACCTCGGATCGGGTCGTCTAC
ATCTCGACCTGCCGCCATCAAAACCAAGCCAGGGTCAGGAGGGGAGAGGG
GAGAGCGGGCGAAACCGTAACAACAACCTGGGTCGCAACGCGAAGAAGCA
CTCTTCCATCGGCAAACAGCGAGACACAGAAGAGGATGCGGCATCATCAT
CGCTCGTCCGAAAGGGAAGCTTGGGGGACGTGGACAATCGGCTTCGCCAG
GGCGAAAAAGCGCTGTGGGGCCGTCGCGGCTCTCCAAGTGTTGGCTCTCC
GGCCGACGCCAGCGGGAATGGCGGTGACAGTCCACGTTGGGACTGGTGGG
AGACCGGTACGCCGTACGCGTTCCAGCCACGCCTTGCTGCGGCCAAGGCA
ACCGTGATGGCTTTCGTCGAGGACGATGGCGATGATGGCCGGACGCCATC
GAGAACCAACAGCACTGCCTCGGGGTTAATGCTGCCGCATCAACAGCAAC
GGCGGCCCCTACAGGGTGGCGGCGGGAGGAGCCACTTGGGCGCGTCCAGG
GGTTCGAGCGGGGAGTTGTTGCGCATCGTGAAGGCGCCAGAGACCAACGA
AAGCCACGGGCAAAGGGTCTTCTTCCTAGCTTGATCTAGAAAGCGCGTTC
TGTCTGTAGCGAGCAAAAATAGCAGGCTGGAAGGCGTTTGACCCCCTTCC
CAACCAAATACAAGAGCAGGCAGCACGGCCGCCTTGCATACAAGTTGGCA
ATTCATCAGGCACGTCACGCTAGTAACCTAGTAACCAAGGCCAAAATCTA
CCCTGCAAAATGAACAGGCCCTTCGGGTAATGGTTACCAGTGGCGCGGGT
ACAACAAAAAGCTTCAGACCTCGCGAGCGCACGACTACCCTCTTGAGTGT
ACAATACCACCGAACCTGTCGTTTTTGGTTCCCAGATAGCTCGTGCTCTG
GGTACAACGTGTTGGGCCTATATCTTGCCTAGTCAAGGTGTAGGGTATGT
CAGTACAGTGCGTCATCCAGCAAATACGGTGTGTTTTGCGCAGAAAATAG
CCTAACGTAAATTCAAATATAAATATCACTTGAACAGACAACCATTTCTT
CCCTTCTTCCGATGGAGGGCACCAAGAAGGGATCCATCCGTACTGTAGCA
AAGGCCACGACAACGCACTTGACCCACGATAACCACCACCCTTACCGTAC
AGTCGATCAATGTTTTCCACACTTGAACGCCCTCATCACGCAGACACACA
AGCCAAGAATTTATTTGTTGCGCTGACTGCAACACACACCGGCGGTAGTT
CCGCTCCTATCCCGAACACAGAACACAGAACCTAGCGTATTGAATATCGC
CTCCCAACTCATCAACCGGCACAACAATAATTTTGGGGAAATGAAAGCAG
CGACCTCGGCACACTCGCTTCCCACGCCCAGGAAAACGAACCTAGAACAT
ATCCGGCGGCCAGGATGCAGAAACAGGAGAAGAACAGGGCCCCCTCGAAG
GCCGTGGTGTACGTCCCTGTTGTCTACCGTTTGCTACCACATCTATCACA
TGATTCAGCCGTGCCACACGCCGCACACTATGAAACCTCACAGCCAATAC
GCGCACACGACCACAAAGACACGAGACCCCGCTTCGAGGGGTTTGAACGG
AAATCACACTTCTTTGAACGACCCCCATCGAACTAACCAATGTCACGACT
GAATTATCGACCACATCACTACACTTGCAATAGAATACCACTAAATAGAT
CATACCTCTCACCAAGAATAACGTTTACCCCGCCAAAGCAGACGGCATCC
AGACACCCAACTCACGGGGGGTTTTGATGGCCGATTCGTTATGAACAGCG
ATCGCCGCCGTCTGTATGGATACAAGCACAAACCACGAAGTGAGCTCAAA
AGCACTGTAGAAAGATAACATACACCCCCATACCCCTATTGCACTGCGCC
GCCTGTTTTTCCCTCCCAAATACCCCGCCCCCCCCCCCCCCCCCCCCCCN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCCCCCGCCTCCCCCCGAGCAAGCTTTCAT
CAACGTCTATCGCCATGCTCAAAGACAGCGATCAAGCTTCTGAATAGCCT
GGTGTTTTTGTGCCACAGCCTCTCCGCTGCACCAGAAAAACACATCAAAT
AACGAAATACGCTAATAGTTACCCCACCCCATACTTCTACATTTTCTCCA
CGACAAAAGCAGAACTCACCCAACGTAAAGCGGGAAGCCGAACCGCCGCT
GCAGGGCTTTCTCTCGTCCTTCTAGACAAGCGGCTACACGGCGTTCATCC
CGAGCAGCCAGCTTGCTAGAGAAGCGCATCTACGACCGACTTCGTCTCTG
CGCAATATTACTACAACGCCGTGCCTCGACTGGCGCTGACGAGGCACCTG
CATGAGCGCTGAGCGGTTTCACAACCACTCCTGCACCGCGACCGCTGTTT
CAGTCGAGCAGTACCCCCCAACTCCCGGACATCCCAGAATCCAGATGACG
TCAAAGACAATCATCACACCCCGTCCCC

Coding sequence (CDS) from alignment at Scaffold_94:203230..206807-

>EsuBft94_14a-0001 ID=EsuBft94_14a-0001|Name=EsuBft94_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1251bp|location=Sequence derived from alignment at Scaffold_94:203230..206807- (Ectocarpus subulatus male Bft15b)
ATGGCAATCGACGCTTTAGAAAGCTCGAGACGCAGCAGTGGTCAACAGAT
CGGGGAGAACCGCCTCCCTGCCGCAGCTGAAGGCGGCAAAAAAGACGGAG
TTGGAGTGGGAGGTAGCAATGCGTCAGTTCCTACTTTCGAGTTCAAGGAA
TACTCGGACTCGGCGAGCCATGATGAAAACAACGATACAGCGGAGGCGAA
AGAGAGCGCTGAAACAAAACTACCCGAAGATGAAGAAGAGAGCGGAGACG
ACGACTGGCACCGAACGGCGTCCGACCAAGAACACGAGATGGATGTGGCG
CAGCAGAAGAAAAACAGACGGACACGGGCTCAGCCCGGAGCGAAACGGGG
AGGGCGACGAGACACTGAAAGAGGTGGTTGGTTCCAGTTGTTAGGACGGA
AGAAGACTCAGTTCGAGCCCGGTGATCTCGTCGAGGCCGAGTGGGCTGGA
ACTGGGTGGTGGTACGTGGGGTACATCAGGTCCGCGTCTGAGGAGCGGGG
AGAAGAATCTGCGGGTGGTACGCCTGGCGCACCACAAGCGAAAACTTCGA
AACGAAGTAAAGAGTTATTTCACGTCGTGTTTGAAGACGGTGACGAGGCG
GACGTTATCAGGAGAGACTTGAAGCGATTGCAACCAACAGTCCACCTATT
CGTGGGTAGCTTGTCTCATTTGTGTTTTCCGGCTGACGTTGGGCTCAAGG
GTCAGGAGGGGAGAGGGGAGAGCGGGCGAAACCGTAACAACAACCTGGGT
CGCAACGCGAAGAAGCACTCTTCCATCGGCAAACAGCGAGACACAGAAGA
GGATGCGGCATCATCATCGCTCGTCCGAAAGGGAAGCTTGGGGGACGTGG
ACAATCGGCTTCGCCAGGGCGAAAAAGCGCTGTGGGGCCGTCGCGGCTCT
CCAAGTGTTGGCTCTCCGGCCGACGCCAGCGGGAATGGCGGTGACAGTCC
ACGTTGGGACTGGTGGGAGACCGGTACGCCGTACGCGTTCCAGCCACGCC
TTGCTGCGGCCAAGGCAACCGTGATGGCTTTCGTCGAGGACGATGGCGAT
GATGGCCGGACGCCATCGAGAACCAACAGCACTGCCTCGGGGTTAATGCT
GCCGCATCAACAGCAACGGCGGCCCCTACAGGGTGGCGGCGGGAGGAGCC
ACTTGGGCGCGTCCAGGGGTTCGAGCGGGGAGTTGTTGCGCATCGTGAAG
GCGCCAGAGACCAACGAAAGCCACGGGCAAAGGGTCTTCTTCCTAGCTTG
A