EsuBft949_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft949_8a-0001
Unique NameEsuBft949_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_597contigScaffold_597:74460..77032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft949_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length127
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft949_8aEsuBft949_8aEctocarpus subulatus male Bft15bgeneScaffold_597 74460..77032 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft949_8a-0001-exonagat-exon-32145Ectocarpus subulatus male Bft15bexonScaffold_597 74460..75185 -
EsuBft949_8a-0001-exonEsuBft949_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_597 76484..77032 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft949_8a-0001-exonagat-three_prime_utr-23392Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_597 74460..74822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft949_8a-0001-cdsEsuBft949_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_597 74823..75185 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft949_8a-0001-exonagat-five_prime_utr-15217Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_597 76838..77032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft949_8a-0001EsuBft949_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_597 74823..76837 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft949_8a-0001 ID=EsuBft949_8a-0001|Name=EsuBft949_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1275bp|location=Sequence derived from alignment at Scaffold_597:74460..77032- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGGCGCATCCTGTTTCACCACAAACATCGCGAACGCAAGCCTCGTTCTCC
ACGGCAATCGACTCCGCTTGGTCGAATTACATAAAGAGACACCACTCTCG
AAGTCATCAGACCTAGTCTCGTTCTAGGACGGCTGTCCCGGCTTGGTTCT
GGCCGTGGCTCGTGGCAGCCTCATGCAGTTAGACCGCACAATCGAATGCG
AGGGGAAGAGAGGGTAGTGAGACAGCAGCGAAAGAAGCACATCCGCGGGA
TACAAATCAGCCAGCTGTTGACAAAGGTTATCACCGAGGCAGCTGGAAAA
CCCGTGCAATCTGTGGTTGCTGATGAAGTTGAGCTCCTCGAAAAGGGTAA
AGAGCATGTTGGAGGCATCCGAGAGAGAGCATCGAAACGCGGGAAACGAC
AGCCTGCTGATGCTGTTGCTGCTTCATCTGCTGCGGCGAAGCAGGCGAAG
CGCAAGGGGGCTGACGCAGCTCTCTCCGACCCTCTAGCATTGGCTCATGA
TGGCGGGACAAGAAGCGGTGCTACCCCAGCTACGTCGCGGGAGGAAGCGC
ACTGCAACAGCTCGATAGGGTGGACCACTTACTACACAGCGCTCGCTGTG
GCAGCCAGAGCGGGAGAGCACACGTGTACTGACACGGACGTGTGCCACCC
CGGCCAGCGGTGCAAGCCCGTTGAGTCTGGTGGAGTGAGCCTTGCCGAGC
GAACCAACAGTCTCGGCATTCGGCACGAAACTTCCAGCGATGCACGGCGG
CGGATGCACAACACGAACCACGACATCGCCCACAAGATCGCTGCGAGTGA
GGGATGCTACGTGTACAACGAGCGCAAGACACGGAGTGACGTGACGAATC
CCGGGAACAGAGGAGGAGCTGGGGGAGGTGCAGGATACCTAAAGTCTTGT
GTGGGCTACTAGTGTTGGGGTGCAGACAGACGATTTTGTGGTGGGAGCGG
CCGGAGACAAGGTGTTGACGGCTAGAAGGTGGGCGGTAGACGAGTCCAGG
GCAAGGAAATGGGCCGCCCCCAAGAACTTCACCAGATCTTGCAAGTTGCG
GGTTCGGGGCGCATCGTGCTACTGCTCGACTTGCCGAATAGGCTGCTACG
ATGTCTGCATGGTAGCGAAGGTGTACCCCGACTTGGTTGGCGAGGTGATG
GAGAAGTTGGGAAAAGAGATGGTTGGGAGACGCACGCGTGGGGCTCAATT
GACCGGCGTTATTCTTCTGGTCATATCTTCGGACGAGTCCCCAGTGGCGC
CTACGCTTGACGAGAGCATGGGGGA
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protein sequence of EsuBft949_8a-0001

>EsuBft949_8 ID=EsuBft949_8|Name=EsuBft949_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=238bp
MRGEERVVRQQRKKHIRGIQISQLLTKVITEAAGKPVQSVVADEVELLEK
GKEHVGGIRERASKRGKRQPADAVAASSAAAKQAKRKGADAALSDPLALA
HDGGTRSGATPATSREEAHCNSSIGWTTYYTALAVAARAGEHTCTDTDVC
HPGQRCKPVESGGVSLAERTNSLGIRHETSSDARRRMHNTNHDIAHKIAA
SEGCYVYNERKTRSDVTNPGNRGGAGGGAGYLKSCVGY
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mRNA from alignment at Scaffold_597:74460..77032-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft949_8a-0001 ID=EsuBft949_8a-0001|Name=EsuBft949_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2573bp|location=Sequence derived from alignment at Scaffold_597:74460..77032- (Ectocarpus subulatus male Bft15b)
CGGCGCATCCTGTTTCACCACAAACATCGCGAACGCAAGCCTCGTTCTCC
ACGGCAATCGACTCCGCTTGGTCGAATTACATAAAGAGACACCACTCTCG
AAGTCATCAGACCTAGTCTCGTTCTAGGACGGCTGTCCCGGCTTGGTTCT
GGCCGTGGCTCGTGGCAGCCTCATGCAGTTAGACCGCACAATCGAATGCG
AGGGGAAGAGAGGGTAGTGAGACAGCAGCGAAAGAAGCACATCCGCGGGA
TACAAATCAGCCAGCTGTTGACAAAGGTTATCACCGAGGCAGCTGGAAAA
CCCGTGCAATCTGTGGTTGCTGATGAAGTTGAGCTCCTCGAAAAGGGTAA
AGAGCATGTTGGAGGCATCCGAGAGAGAGCATCGAAACGCGGGAAACGAC
AGCCTGCTGATGCTGTTGCTGCTTCATCTGCTGCGGCGAAGCAGGCGAAG
CGCAAGGGGGCTGACGCAGCTCTCTCCGACCCTCTAGCATTGGCTCATGA
TGGCGGGACAAGAAGCGGTGCTACCCCAGCTACGTCGCGGGAGGAAGCGG
TGAGTTTTGAATCACTTCTGAGGTGCTGCTGAAAGTTGTTCCAGTGCTTG
ATTGACTGCGCTTTACCTTGCGCGCCAGTTAGTGCCAGCTGCTCTATTCT
TGAATTTGAAATTTGGTACACGCGCTGCCCGTCCTGTTTGCCTCCAAGAA
TTGAGGTCCATTCCACCACGTCGATTTCTTAAGCACATTAAAAGTTGCAC
GGGTTTGGTGACTGCTGTAACTGCTGCAATGACGCTGCTACCGTGGTGTT
TATTTGTCGCTCACTCACATGTTCCCCCGACTCCTCCAATAACTACTGAT
ACGTGGTACGCAGGTTGCGGNGTTTGCCTCCAAGAATTGAGGTCCATTCC
ACCACGTCGATTTCTTAAGCACATTAAAAGTTGCACGGGTTTGGTGACTG
CTGTAACTGCTGCAATGACGCTGCTACCGTGGTGTTTATTTGTCGCTCAC
TCACATGTTCCCCCGACTCCTCCAATAACTACTGATACGTGGTACGCAGG
TTGCGGAGGACCGTCGCTCTAGCGCGATGGATTTGATGCAGAACGACCCC
GTGTTGATGATCTATTCTTGAATTTGAAATTTGGTACACGCGCTGCCCGT
CCTCGTTGCCCTCAAGAATTGAGGTCCATTCCACCACGTCGATATCTTAA
GCACAGAAAGCGCGTTAAATGTTGCACGGGTTTGGTGACTGCTGTAACTG
CTGCAATGACGCTGCTACCGTGGTGTTTATTGGTCGCTCACTCATATGTT
CCCCCGACTCCTCCAATAACTACTGATACGTTGTACGCAGGTTGCGGAGG
AGCGTCGCTCTAGCGTGATGGATTTGATGCAGAACGACCCCGTGTCGATC
TATTTGTCGCTCACTCATACGTTCCCCCGACTCCTCCAATAACTACTGAT
ACGTGGTACGCAGGTTGCGGAGGACCGTCGCTCTAGCGCGATGGATTTGA
TGCAGAACGACCCCGTGTTGATTAATCTGACTAATCAACACGGGGTCGTT
CTGCATCAAATCCATCGCGCTATGGCGACGCTCCTCCGCAACCTGCGTAC
CACGTATCATTGGTTATTGGAGGAGTCGGGGGAACATATGAGTGAGCGAC
AAATAAACACCACGGTAGCAGCGTCATTGCAGCAGTTACAGCAGTCACCA
TACCCGTGCAACTTTTAATGCGCTTTCTGTGAGCGAGTACGGGCCATGCT
GGATGCTGGCGCGGCAGAGCAGGCAGCAGCTAAGGTGGCTGCAATCGACG
CGGCCAACACTCGTGCACTCCGCGCGTCGTTGTAAGCGCTGAAGCAGCAC
TGCAACAGCTCGATAGGGTGGACCACTTACTACACAGCGCTCGCTGTGGC
AGCCAGAGCGGGAGAGCACACGTGTACTGACACGGACGTGTGCCACCCCG
GCCAGCGGTGCAAGCCCGTTGAGTCTGGTGGAGTGAGCCTTGCCGAGCGA
ACCAACAGTCTCGGCATTCGGCACGAAACTTCCAGCGATGCACGGCGGCG
GATGCACAACACGAACCACGACATCGCCCACAAGATCGCTGCGAGTGAGG
GATGCTACGTGTACAACGAGCGCAAGACACGGAGTGACGTGACGAATCCC
GGGAACAGAGGAGGAGCTGGGGGAGGTGCAGGATACCTAAAGTCTTGTGT
GGGCTACTAGTGTTGGGGTGCAGACAGACGATTTTGTGGTGGGAGCGGCC
GGAGACAAGGTGTTGACGGCTAGAAGGTGGGCGGTAGACGAGTCCAGGGC
AAGGAAATGGGCCGCCCCCAAGAACTTCACCAGATCTTGCAAGTTGCGGG
TTCGGGGCGCATCGTGCTACTGCTCGACTTGCCGAATAGGCTGCTACGAT
GTCTGCATGGTAGCGAAGGTGTACCCCGACTTGGTTGGCGAGGTGATGGA
GAAGTTGGGAAAAGAGATGGTTGGGAGACGCACGCGTGGGGCTCAATTGA
CCGGCGTTATTCTTCTGGTCATATCTTCGGACGAGTCCCCAGTGGCGCCT
ACGCTTGACGAGAGCATGGGGGA
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Coding sequence (CDS) from alignment at Scaffold_597:74460..77032-

>EsuBft949_8a-0001 ID=EsuBft949_8a-0001|Name=EsuBft949_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=717bp|location=Sequence derived from alignment at Scaffold_597:74460..77032- (Ectocarpus subulatus male Bft15b)
ATGCGAGGGGAAGAGAGGGTAGTGAGACAGCAGCGAAAGAAGCACATCCG
CGGGATACAAATCAGCCAGCTGTTGACAAAGGTTATCACCGAGGCAGCTG
GAAAACCCGTGCAATCTGTGGTTGCTGATGAAGTTGAGCTCCTCGAAAAG
GGTAAAGAGCATGTTGGAGGCATCCGAGAGAGAGCATCGAAACGCGGGAA
ACGACAGCCTGCTGATGCTGTTGCTGCTTCATCTGCTGCGGCGAAGCAGG
CGAAGCGCAAGGGGGCTGACGCAGCTCTCTCCGACCCTCTAGCATTGGCT
CATGATGGCGGGACAAGAAGCGGTGCTACCCCAGCTACGTCGCGGGAGGA
AGCGCACTGCAACAGCTCGATAGGGTGGACCACTTACTACACAGCGCTCG
CTGTGGCAGCCAGAGCGGGAGAGCACACGTGTACTGACACGGACGTGTGC
CACCCCGGCCAGCGGTGCAAGCCCGTTGAGTCTGGTGGAGTGAGCCTTGC
CGAGCGAACCAACAGTCTCGGCATTCGGCACGAAACTTCCAGCGATGCAC
GGCGGCGGATGCACAACACGAACCACGACATCGCCCACAAGATCGCTGCG
AGTGAGGGATGCTACGTGTACAACGAGCGCAAGACACGGAGTGACGTGAC
GAATCCCGGGAACAGAGGAGGAGCTGGGGGAGGTGCAGGATACCTAAAGT
CTTGTGTGGGCTACTAG
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