EsuBft947_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft947_3a-0001
Unique NameEsuBft947_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_424contigScaffold_424:711768..712199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft947_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length43
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft947_3aEsuBft947_3aEctocarpus subulatus male Bft15bgeneScaffold_424 711768..712199 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft947_3a-0001-exonEsuBft947_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_424 711768..712199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft947_3a-0001-cdsEsuBft947_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_424 711768..712199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft947_3a-0001EsuBft947_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_424 711768..712199 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft947_3a-0001 ID=EsuBft947_3a-0001|Name=EsuBft947_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=432bp|location=Sequence derived from alignment at Scaffold_424:711768..712199+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATGAAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGAAATGGAAAGAGAGCGCCAAGGACTCGGAGGTGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACATGCAGGAGAAGG
AAGCGTCCGCAAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACG
GCTATCTCAGGACCGGAGAGAACGAGAGCCGGGGAAGCGGCGGTGGGGGG
GAAGAAACGGCGACAGGGCACTACTGTAGAAGCGAGTAGGGCGGCCGAGG
CAGCACTTGTGGCGAACTATGTACCCGGCTGA
back to top

protein sequence of EsuBft947_3a-0001

>EsuBft947_3 ID=EsuBft947_3|Name=EsuBft947_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=143bp
MRMKDSRLPKRMLLGAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEG
GKWKESAKDSEVWYNKVEDGAAWFMRKWHMQEKEASAKRQRAREAEAEST
AISGPERTRAGEAAVGGKKRRQGTTVEASRAAEAALVANYVPG
back to top

mRNA from alignment at Scaffold_424:711768..712199+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft947_3a-0001 ID=EsuBft947_3a-0001|Name=EsuBft947_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=432bp|location=Sequence derived from alignment at Scaffold_424:711768..712199+ (Ectocarpus subulatus male Bft15b)
ATGCGCATGAAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGAAATGGAAAGAGAGCGCCAAGGACTCGGAGGTGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACATGCAGGAGAAGG
AAGCGTCCGCAAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACG
GCTATCTCAGGACCGGAGAGAACGAGAGCCGGGGAAGCGGCGGTGGGGGG
GAAGAAACGGCGACAGGGCACTACTGTAGAAGCGAGTAGGGCGGCCGAGG
CAGCACTTGTGGCGAACTATGTACCCGGCTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_424:711768..712199+

>EsuBft947_3a-0001 ID=EsuBft947_3a-0001|Name=EsuBft947_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=432bp|location=Sequence derived from alignment at Scaffold_424:711768..712199+ (Ectocarpus subulatus male Bft15b)
ATGCGCATGAAGGACAGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGAT
GGCGGGGGGCGTGGGATACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTC
GTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAGACGAAAAGGAAGGG
GGGAAATGGAAAGAGAGCGCCAAGGACTCGGAGGTGTGGTACAACAAGGT
CGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCACATGCAGGAGAAGG
AAGCGTCCGCAAAGCGCCAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACG
GCTATCTCAGGACCGGAGAGAACGAGAGCCGGGGAAGCGGCGGTGGGGGG
GAAGAAACGGCGACAGGGCACTACTGTAGAAGCGAGTAGGGCGGCCGAGG
CAGCACTTGTGGCGAACTATGTACCCGGCTGA
back to top