EsuBft946_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft946_2a-0001
Unique Name	EsuBft946_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_390	contig	Scaffold_390:99054..101456 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4530.OS08T0125300-01
ProteomeId	EsuBft946_2
Protein domains	IPR001584
Protein domains	PTHR11439
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	35493\|Streptophyta
Length	2223
Hectar predicted targeting category	other localisation
Evalue	1.93e-10
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M5VU@4447\|Liliopsida,3IIIB@38820\|Poales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	gag-polypeptide of LTR copia-type
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft946_2a	EsuBft946_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_390 99054..101456 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft946_2a-0001-exon	EsuBft946_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 99054..99644 +
EsuBft946_2a-0001-exon	agat-exon-28394	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 99745..100702 +
EsuBft946_2a-0001-exon	agat-exon-28395	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 100783..101456 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft946_2a-0001-cds	EsuBft946_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_390 99054..99644 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft946_2a-0001-exon	agat-three_prime_utr-23360	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_390 100866..101456 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft946_2a-0001	EsuBft946_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_390 99054..100865 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_390:99054..101456+
coding sequence from alignment at Scaffold_390:99054..101456+

spliced messenger RNA

>EsuBft946_2a-0001 ID=EsuBft946_2a-0001|Name=EsuBft946_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2223bp|location=Sequence derived from alignment at Scaffold_390:99054..101456+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCGGATAGCTTCTTGCGGTGGATGATGCTGTACGGGATGAGACG
CAAGTCGGACACCCTCGCCTTCCTCAAGAAGTTCCTCGCTGACATGAGTG
GCACCGGTGTTCTTCGCTCTTTCCGGATGGACAACGGGGGGGAGGTCATC
AGCCGCGACTTCATCGCCTTCTGCGACAACGCCGGCATCCGCCGTACGTT
TACGGCGCCGGGCACCCCGCAACAGAATGGTCCGGCGGAGAGCACGATCT
GGCGCGTGAACAAGGCCGGCCACGCCGCTCGTCTCGAGGCACGCCGCCAG
TTCCGCAAGATCGACTTCACCCGCATCCCCGGCTTCGGGCGCGATGGCGA
GCGCCTTTGGCTTGACTCGTGTCACTGGGCTGCCGGCGGCCTCAACCGTT
CCGCGCCCAAGGCAAACGTCGGGTACAAGTCGCCGCACGAGCTCTTCACC
GGTCGCCCGCACCCCCTCCAGATCGTCCCGTTCTTGCAGCCGGGGTGCGT
GCGTGTGACGCGCGCGTGGAAGATGGATCCCCAGGCAGTGCTGTGCTGCT
ACCTCAACAACGGCGACAACCATCACGAGTCGGCGGTCAAGTTCCGCAAG
ATCGACTTCACCCGCATCCCCGGCTTCGGGCGCGATGGCGAGCGCCTTTG
GCTTGACTCGTGTCACTGGGCTGCCGGCGGCCTCAACCGTTCCGCGCCCA
AGGCAAACGTCGGGTACAAGTCGCCGCACGAGCTCTTCACCGGTCGCCCG
CACCCCCTCCAGATCGTCCCGTTCTTGCAGCCGGGGTGCGTGCGTGTGAC
GCGCGCGTGGAAGATGGATCCCCAGGCAGTGCTGTGCTGCTACCTCAACA
ACGGCGACAACCATCACGAGTCGGCGGTCAAGGTCCTCAAGTTTACGACG
GGGCGCGTGTGCATGATAAACAACGTCGGGTGGGTCTCCGACCGCGCGCC
GTTGCTGACCCCGCCGCTGGAGCTGCCGGCGCCGGCGGGCGAGGGGGGGG
ATTCGGATGTCGCCGCCGCACCGTTTCTAGTTGAGTGCATTACACCGCAT
CGTTTACCCCCCTCACCGTTCGCCCGCCCTCCCACTTCACCCGCTGCCAT
ATCCACACAGGCGCCGCCGGCAACTTCCACACCACCATCGCCGGCGGCGC
CGTCTACGGCAGCCACGCCACCGCCAACGGTCACCGCGCCGCCTGCAACG
CCGTTCGCCGCAGCGCCACCGTTCACCACTGCCACTGCGCCGCTGGCTGC
ACCGTTCACCACCGCCGCTGCACCGTCAGCAACACCGTTCCCCGCCGCCG
CACCGCCCGGTGCCGCGCCATCGACCAACATGCCGCCGCTCACCACGAGG
ACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCTCTCTGCCAGGGCCAATCGAGAGCT
GGACTTGGGAAGAGAGACGCGGGTGCCAGGGAGGTTGAGGAGTCGGGGGG
ACAAGGCAACGTTCCTGTCGACTCTCACCACTCGCAGCGTCGTCGATGGG
AGGAGAAAGGAGATTCCGAGTTCAGCCGGTAGACGTGATGGAGCGGAGCC
GGGGGGGCGAGAGCGGGGGGTCACAAAAACAGGACGACTGCGTGAAGAAG
TCCCATTTGCGTGCGCCACCGTACTTGCCTCCCGCGAGGACATCGACCGC
GCGATGAGGGATTTAGATCCCCCGGAAGTGGCACCGGACTTGCCACATTG
CTATGCTAATGATCTCAGAGTACCGAAGACATTTAGGGAGGCTATGAACT
CTGACGATGTGTGTGTGCTTTCGTTCTATTTATTATGGCGACAGTCCCCC
CACTTTTCGTGGTGAGACGTGTATTACACTTTTTAGCGTATGTAGAGTAC
TACACTTTTCAGTGTATTTTTTCGTACAACTACAACAATCCAGGGTCACA
CAGGAGGGGGTATAAACACCAGGGCTTTTTTATTTTTTTTATTTTCATGC
CCCACCTTCCTCCTGCGGTGCGTGCTAAATTTCATTTATATCGCGAGAAG
GGTCTAGCCGTCCCTTTCCCTCGTCAACGGTGCTAACGTCGAAGTTTGGT
ACTCACGAGAGCTTGTCAGCTATCTTTCGCTTTCACCCGCACATTTCGTA
AATTTTTCACCCCATGGGGATTC

protein sequence of EsuBft946_2a-0001

>EsuBft946_2 ID=EsuBft946_2|Name=EsuBft946_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=543bp
MFADSFLRWMMLYGMRRKSDTLAFLKKFLADMSGTGVLRSFRMDNGGEVI
SRDFIAFCDNAGIRRTFTAPGTPQQNGPAESTIWRVNKAGHAARLEARRQ
FRKIDFTRIPGFGRDGERLWLDSCHWAAGGLNRSAPKANVGYKSPHELFT
GRPHPLQIVPFLQPGCVRVTRAWKMDPQAVLCCYLNNGDNHHESAVKFRK
IDFTRIPGFGRDGERLWLDSCHWAAGGLNRSAPKANVGYKSPHELFTGRP
HPLQIVPFLQPGCVRVTRAWKMDPQAVLCCYLNNGDNHHESAVKVLKFTT
GRVCMINNVGWVSDRAPLLTPPLELPAPAGEGGDSDVAAAPFLVECITPH
RLPPSPFARPPTSPAAISTQAPPATSTPPSPAAPSTAATPPPTVTAPPAT
PFAAAPPFTTATAPLAAPFTTAAAPSATPFPAAAPPGAAPSTNMPPLTTR
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLCQGQSRA
GLGKRDAGAREVEESGGQGNVPVDSHHSQRRRWEEKGDSEFSR

mRNA from alignment at Scaffold_390:99054..101456+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft946_2a-0001 ID=EsuBft946_2a-0001|Name=EsuBft946_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2403bp|location=Sequence derived from alignment at Scaffold_390:99054..101456+ (Ectocarpus subulatus male Bft15b)
ATGTTCGCGGATAGCTTCTTGCGGTGGATGATGCTGTACGGGATGAGACG
CAAGTCGGACACCCTCGCCTTCCTCAAGAAGTTCCTCGCTGACATGAGTG
GCACCGGTGTTCTTCGCTCTTTCCGGATGGACAACGGGGGGGAGGTCATC
AGCCGCGACTTCATCGCCTTCTGCGACAACGCCGGCATCCGCCGTACGTT
TACGGCGCCGGGCACCCCGCAACAGAATGGTCCGGCGGAGAGCACGATCT
GGCGCGTGAACAAGGCCGGCCACGCCGCTCGTCTCGAGGCACGCCGCCAG
TTCCGCAAGATCGACTTCACCCGCATCCCCGGCTTCGGGCGCGATGGCGA
GCGCCTTTGGCTTGACTCGTGTCACTGGGCTGCCGGCGGCCTCAACCGTT
CCGCGCCCAAGGCAAACGTCGGGTACAAGTCGCCGCACGAGCTCTTCACC
GGTCGCCCGCACCCCCTCCAGATCGTCCCGTTCTTGCAGCCGGGGTGCGT
GCGTGTGACGCGCGCGTGGAAGATGGATCCCCAGGCAGTGCTGTGCTGCT
ACCTCAACAACGGCGACAACCATCACGAGTCGGCGGTCAAGGTCCTCAAG
TTTACGACGGGGCGCGTGTGCATGATAAACAACGTCGGGTGGGTCTCCGA
CCGCGCGCCGTTGCTGACCCCGCCGCTGGAGCTGCCGGNAGTTCCGCAAG
ATCGACTTCACCCGCATCCCCGGCTTCGGGCGCGATGGCGAGCGCCTTTG
GCTTGACTCGTGTCACTGGGCTGCCGGCGGCCTCAACCGTTCCGCGCCCA
AGGCAAACGTCGGGTACAAGTCGCCGCACGAGCTCTTCACCGGTCGCCCG
CACCCCCTCCAGATCGTCCCGTTCTTGCAGCCGGGGTGCGTGCGTGTGAC
GCGCGCGTGGAAGATGGATCCCCAGGCAGTGCTGTGCTGCTACCTCAACA
ACGGCGACAACCATCACGAGTCGGCGGTCAAGGTCCTCAAGTTTACGACG
GGGCGCGTGTGCATGATAAACAACGTCGGGTGGGTCTCCGACCGCGCGCC
GTTGCTGACCCCGCCGCTGGAGCTGCCGGCGCCGGCGGGCGAGGGGGGGG
ATTCGGATGTCGCCGCCGCACCGTTTCTAGTTGAGTGCATTACACCGCAT
CGTTTACCCCCCTCACCGTTCGCCCGCCCTCCCACTTCACCCGCTGCCAT
ATCCACACAGGCGCCGCCGGCAACTTCCACACCACCATCGCCGGCGGCGC
CGTCTACGGCAGCCACGCCACCGCCAACGGTCACCGCGCCGCCTGCAACG
CCGTTCGCCGCAGCGCCACCGTTCACCACTGCCACTGCGCCGCTGGCTGC
ACCGTTCACCACCGCCGCTGCACCGTCAGCAACACCGTTCCCCGCCGCCG
CACCGCCCGGTGCCGCGCCATCGACCAACATGCCGCCGCTCACCACGAGG
ACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCTCTCTGCCAGGGCCAATCGAGAGCT
GGACTTGGGAAGAGAGACGCGGGTGCCAGGGAGGTTGAGGAGTCGGGGGG
TACGTTTCCAGGGTGGGGGGGCCGAGCGGTCGACGTCACCGCCGCTCCCG
CGCACCGCCTCGGGCTTGTATCCCTGCAGGACAAGGCAACGTTCCTGTCG
ACTCTCACCACTCGCAGCGTCGTCGATGGGAGGAGAAAGGAGATTCCGAG
TTCAGCCGGTAGACGTGATGGAGCGGAGCCGGGGGGGCGAGAGCGGGGGG
TCACAAAAACAGGACGACTGCGTGAAGAAGTCCCATTTGCGTGCGCCACC
GTACTTGCCTCCCGCGAGGACATCGACCGCGCGATGAGGGATTTAGATCC
CCCGGAAGTGGCACCGGACTTGCCACATTGCTATGCTAATGATCTCAGAG
TACCGAAGACATTTAGGGAGGCTATGAACTCTGACGATGTGTGTGTGCTT
TCGTTCTATTTATTATGGCGACAGTCCCCCCACTTTTCGTGGTGAGACGT
GTATTACACTTTTTAGCGTATGTAGAGTACTACACTTTTCAGTGTATTTT
TTCGTACAACTACAACAATCCAGGGTCACACAGGAGGGGGTATAAACACC
AGGGCTTTTTTATTTTTTTTATTTTCATGCCCCACCTTCCTCCTGCGGTG
CGTGCTAAATTTCATTTATATCGCGAGAAGGGTCTAGCCGTCCCTTTCCC
TCGTCAACGGTGCTAACGTCGAAGTTTGGTACTCACGAGAGCTTGTCAGC
TATCTTTCGCTTTCACCCGCACATTTCGTAAATTTTTCACCCCATGGGGA
TTC

Coding sequence (CDS) from alignment at Scaffold_390:99054..101456+

>EsuBft946_2a-0001 ID=EsuBft946_2a-0001|Name=EsuBft946_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1632bp|location=Sequence derived from alignment at Scaffold_390:99054..101456+ (Ectocarpus subulatus male Bft15b)
ATGTTCGCGGATAGCTTCTTGCGGTGGATGATGCTGTACGGGATGAGACG
CAAGTCGGACACCCTCGCCTTCCTCAAGAAGTTCCTCGCTGACATGAGTG
GCACCGGTGTTCTTCGCTCTTTCCGGATGGACAACGGGGGGGAGGTCATC
AGCCGCGACTTCATCGCCTTCTGCGACAACGCCGGCATCCGCCGTACGTT
TACGGCGCCGGGCACCCCGCAACAGAATGGTCCGGCGGAGAGCACGATCT
GGCGCGTGAACAAGGCCGGCCACGCCGCTCGTCTCGAGGCACGCCGCCAG
TTCCGCAAGATCGACTTCACCCGCATCCCCGGCTTCGGGCGCGATGGCGA
GCGCCTTTGGCTTGACTCGTGTCACTGGGCTGCCGGCGGCCTCAACCGTT
CCGCGCCCAAGGCAAACGTCGGGTACAAGTCGCCGCACGAGCTCTTCACC
GGTCGCCCGCACCCCCTCCAGATCGTCCCGTTCTTGCAGCCGGGGTGCGT
GCGTGTGACGCGCGCGTGGAAGATGGATCCCCAGGCAGTGCTGTGCTGCT
ACCTCAACAACGGCGACAACCATCACGAGTCGGCGGTCAAGTTCCGCAAG
ATCGACTTCACCCGCATCCCCGGCTTCGGGCGCGATGGCGAGCGCCTTTG
GCTTGACTCGTGTCACTGGGCTGCCGGCGGCCTCAACCGTTCCGCGCCCA
AGGCAAACGTCGGGTACAAGTCGCCGCACGAGCTCTTCACCGGTCGCCCG
CACCCCCTCCAGATCGTCCCGTTCTTGCAGCCGGGGTGCGTGCGTGTGAC
GCGCGCGTGGAAGATGGATCCCCAGGCAGTGCTGTGCTGCTACCTCAACA
ACGGCGACAACCATCACGAGTCGGCGGTCAAGGTCCTCAAGTTTACGACG
GGGCGCGTGTGCATGATAAACAACGTCGGGTGGGTCTCCGACCGCGCGCC
GTTGCTGACCCCGCCGCTGGAGCTGCCGGCGCCGGCGGGCGAGGGGGGGG
ATTCGGATGTCGCCGCCGCACCGTTTCTAGTTGAGTGCATTACACCGCAT
CGTTTACCCCCCTCACCGTTCGCCCGCCCTCCCACTTCACCCGCTGCCAT
ATCCACACAGGCGCCGCCGGCAACTTCCACACCACCATCGCCGGCGGCGC
CGTCTACGGCAGCCACGCCACCGCCAACGGTCACCGCGCCGCCTGCAACG
CCGTTCGCCGCAGCGCCACCGTTCACCACTGCCACTGCGCCGCTGGCTGC
ACCGTTCACCACCGCCGCTGCACCGTCAGCAACACCGTTCCCCGCCGCCG
CACCGCCCGGTGCCGCGCCATCGACCAACATGCCGCCGCTCACCACGAGG
ACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCTCTCTGCCAGGGCCAATCGAGAGCT
GGACTTGGGAAGAGAGACGCGGGTGCCAGGGAGGTTGAGGAGTCGGGGGG
ACAAGGCAACGTTCCTGTCGACTCTCACCACTCGCAGCGTCGTCGATGGG
AGGAGAAAGGAGATTCCGAGTTCAGCCGGTAG