EsuBft946_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft946_10a-0001
Unique NameEsuBft946_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_390contigScaffold_390:184300..189778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog132908.ENSPVAP00000001647
ProteomeIdEsuBft946_10
Protein domainsPTHR24106
Protein domainsIPR001611
Protein domainsPF13516
Protein domainsSSF52047
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Noteprotein carmil os:dictyostelium discoideum gn:carmil pe:1 sv:1 [Automatic annotation]
Nb exon8
Max annot lvl33208|Metazoa
Length1056
Hectar predicted targeting categoryother localisation
Evalue4.49e-05
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota,39RX0@33154|Opisthokonta,3BHWA@33208|Metazoa,3D260@33213|Bilateria,484XJ@7711|Chordata,495GJ@7742|Vertebrata,3JCMT@40674|Mammalia,4KSVW@9397|Chiroptera
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-26_001840.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameLRRC31
DescriptionLeucine rich repeat containing 31
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft946_10aEsuBft946_10aEctocarpus subulatus male Bft15bgeneScaffold_390 184300..189778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft946_10a-0001EsuBft946_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_390 184300..189778 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft946_10a-0001-exonagat-exon-28441Ectocarpus subulatus male Bft15bexonScaffold_390 184300..184374 +
EsuBft946_10a-0001-exonagat-exon-28438Ectocarpus subulatus male Bft15bexonScaffold_390 184640..184821 +
EsuBft946_10a-0001-exonEsuBft946_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_390 185492..185683 +
EsuBft946_10a-0001-exonagat-exon-28443Ectocarpus subulatus male Bft15bexonScaffold_390 186203..186295 +
EsuBft946_10a-0001-exonagat-exon-28439Ectocarpus subulatus male Bft15bexonScaffold_390 186573..186735 +
EsuBft946_10a-0001-exonagat-exon-28442Ectocarpus subulatus male Bft15bexonScaffold_390 188545..188549 +
EsuBft946_10a-0001-exonagat-exon-28444Ectocarpus subulatus male Bft15bexonScaffold_390 188699..188786 +
EsuBft946_10a-0001-exonagat-exon-28440Ectocarpus subulatus male Bft15bexonScaffold_390 189521..189778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft946_10a-0001-cdsEsuBft946_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_390 184300..184374 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft946_10a-0001 ID=EsuBft946_10a-0001|Name=EsuBft946_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1056bp|location=Sequence derived from alignment at Scaffold_390:184300..189778+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGATGTCGGACGTATGTTCGACTGGGAGGATGAGGCCCTCGAGGA
ACGCTGCCTAGATTTACAGGATAAGAATATCAGCACGAGCGACATCGGCG
CGTTCCTCCAGTCGTTGGACGGGCTCCATGACGTCAGTTCTTTAAAGGTC
GTCAACCTAGCCGGCAATCGTGTGGGGTCCAAACGCGAGAGCATGGTGCC
GATCGATACCCTGCTCACAGCATCTGCAAGAAGTCTCACGGCGCTGAATT
TTTGTGGCAATCCGCTTGGGGAGGAGCAGCGATACGTTGGGCCTTTGGTG
GCGCTGGCAGACACGCTGACGAGTTTGTCTCGCCTCAAGGTGCTGGACCT
GTCGAACTGCACCCTTATCGGCCTGTCGGGGAACCGTTACCACGGCCTCA
ACGCGCTTGGAAACACCTTGGCGAGTGGCAAGAAATTGACACACCTCAGA
ATATCTGGCAACCGCCTCCACAGTGAAGCCGCGCTGATTGTCGGCGGCTG
GTTGCCCTCTTTGCCCAAGCTGCGGTACCTCGACTTGTCCAGCCGGTCGG
GCTTCGATCCGTTGTGCGGAGCCTTCCGCACATCCTTGCACCTGCGAACC
CTGCTCCTGCGTGATGTCGGCATGGACGACCTGGAGGCGGAAGGAGTGGC
GTCGTTCTTGGCGCTCTCTGTTCGCCTCGAAAAGCTGGATCTTTCTGAGA
ATCAGGAAAGGCTGTCGGGGAACGATATCCCCCCCTCTGACGTTGAGGAG
ATGCAGGAGTACGCCTCATCGAACGTCGAACTACGGGCCGTCGCAGATGC
GCCGGAGAGCTACGACTTGTGGCAAGCATCCGAAATAGTCGAAACCTGCC
TGGTGGCCAAGTTCGACCGCCTGCCACCGGGCGTTGCGGACGCCCTGAAG
AAAAACCCCACCTTTGTCGAAGAAGAGGGGCCGATGCGAGAGGCGGTCTT
GGCTGCCTCGCCCCTCACCAAGCAAGAGCTATTGAGGAACAGCCCCGGAG
CGGAGGATATCGCCATGAAGGTTGGATGTGGATGTGGAGGGAGGGGGAGG
CTGTGA
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protein sequence of EsuBft946_10a-0001

>EsuBft946_10 ID=EsuBft946_10|Name=EsuBft946_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=351bp
MDDVGRMFDWEDEALEERCLDLQDKNISTSDIGAFLQSLDGLHDVSSLKV
VNLAGNRVGSKRESMVPIDTLLTASARSLTALNFCGNPLGEEQRYVGPLV
ALADTLTSLSRLKVLDLSNCTLIGLSGNRYHGLNALGNTLASGKKLTHLR
ISGNRLHSEAALIVGGWLPSLPKLRYLDLSSRSGFDPLCGAFRTSLHLRT
LLLRDVGMDDLEAEGVASFLALSVRLEKLDLSENQERLSGNDIPPSDVEE
MQEYASSNVELRAVADAPESYDLWQASEIVETCLVAKFDRLPPGVADALK
KNPTFVEEEGPMREAVLAASPLTKQELLRNSPGAEDIAMKVGCGCGGRGR
L
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mRNA from alignment at Scaffold_390:184300..189778+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft946_10a-0001 ID=EsuBft946_10a-0001|Name=EsuBft946_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5479bp|location=Sequence derived from alignment at Scaffold_390:184300..189778+ (Ectocarpus subulatus male Bft15b)
ATGGACGATGTCGGACGTATGTTCGACTGGGAGGATGAGGCCCTCGAGGA
ACGCTGCCTAGATTTACAGGATAAGGTACGAACGAGGCCGACGCTGTGAA
CGAATTCACGCCGCATTTTTTTTGTCACAGAACTAGAAACAAGCGCATCT
GCCCGACTGTGCGATTGTCAACAAGACGATTACCCTCATCACTGAAAGCT
TTCAATGCATCCCCTATTGAGTGTTGCCTTGGACGGGTGTACCTCTATTA
TTCGGTGCATACGGTATCGTAAGACACCAATATTACGCAACAAATAATTC
ACCAAGAAGGGCGGACCGCGTTTCCGCATGTGTGTGGCAGAATATCAGCA
CGAGCGACATCGGCGCGTTCCTCCAGTCGTTGGACGGGCTCCATGACGTC
AGTTCTTTAAAGGTCGTCAACCTAGCCGGCAATCGTGTGGGGTCCAAACG
CGAGAGCATGGTGCCGATCGATACCCTGCTCACAGCATCTGCAAGAAGTC
TCACGGCGCTGAATTTTTGTGGGTGAGCTTGTTGGTGATTCTTTCAGAGT
AGAATCCGATAAGTTTTTCACCACAGCATTTCTGGCGGTCAAGTTCTACA
GATTGACTTCAAATGATGTAGCATGGATGAAACCAGTTATATTTTGGGCT
GAGGTGCATTCTTTGCTCAGGGCATCGAACCTGAAGCACCCCTCGCGGGA
GCTTTCGCAGACCGGTTGTGATAAAAAGTGATTCGAGTGTTTGTCGGGAT
ATTTAGCCGTGGCCGTTTTTAGGCTGTAGCCACGGAAGGCGTCCGCGCCA
GTTGGACCAGCAGAGCACGAATTTTGAGGGCGCTGAGCAGAGATCAGAGC
GGCATTTGACGTGAAGACAACAGCAACTATAACAACAATCACAGAATTGA
AGCTCGCTTTCAATCAAGAATGGAGACACACTCTAGGCAGCGCGCGGTGT
CACAGTTGGTATTGCGGCTGAAACGAGAGGCAGGCACGTCGCTCTGAGGC
TGTAATGGCCATAGACAATGCGAATCACCATAGTACCACTCGCACAACCG
TCGGAGCTCGTGGCTGCGTATCGCACGAATAGCTCCATTCACAATAAACC
TCCAGACCCAGGCAGCGTTTCCAGTAATACGGCCATTGTCAAAACACCTT
CGCAGCGTCGGTCGATTAACGGTCAATCACGCATCGGTGCAGCAATCCGC
TTGGGGAGGAGCAGCGATACGTTGGGCCTTTGGTGGCGCTGGCAGACACG
CTGACGAGTTTGTCTCGCCTCAAGGTGCTGGACCTGTCGAACTGCACCCT
TATCGGCCTGTCGGGGAACCGTTACCACGGCCTCAACGCGCTTGGAAACA
CCTTGGCGAGTGGCAAGAAATTGACACACCTCAGGTGCAACACACTTGGC
AAACAATACATTTCGTTTGAGACACTCCGTTGTAAGGTAGTCTAGCACAC
AGCCGGCAAGTGTTAATGTTTTGCGACGGTCTATTGGGGCATTGTTACTG
TAATTTCGAAGTACAGAAGTCAGTCGATAGTCTACGAGTTCTCATCATGT
ATTTTAGTTCCAGAGTACTTCTTGTAGACTACTGTAGAACGAGGTATAGT
GTGTTCGCTAGCGCGATTGCAAAATTGTCGTAGACGCTGTAACCCGTGCC
CCCAATCAATTTCTCGCAGAACCAATGCACAATTATGTACATGTGTGGTC
CAAGAAGATTTCTGAGGGAAGCAGCAGCTGGTGTTGAAAGGTCGTCTCGG
GGACTTGGTTGAGATTCGAACGACGTGCACCCTGATTCTGTCTAACCGAA
TCCTAACGCGAAGCTCCTGGTGTGCGTTTCCTTTCAACTTACTCCTGGGT
TGCGGCAAATGCTTCCCCTCCCCCCCCACTTGCACCCCCGCTGTTCGGGG
CAGAATATCTGGCAACCGCCTCCACAGTGAAGCCGCGCTGATTGTCGGCG
GCTGGTTGCCCTCTTTGCCCAAGCTGCGGTACCTCGACTTGTCCAGGTGA
TGCGCTTTCGTTCTATGCTCCAACTTCTGCAGAGTCCCATTTTATTCATT
CCGAAGGGCTTGAGTAGAGACGCGCCCCTTCCGTGTTTTGCACTGGTGTC
AGGTTTCAAGGATGTTTGCGGTTCGATTTTTGTCTTTGAGGAAGAGGCGC
GCTGTACACTCTACCAACGCTTCAGCAGAGAGAGAGAGAGACTCGACTTC
CCACCGTGCGTACCCCGCCAACTGCTTCTCGGCTCAGAAATCCTCTAGCC
CACGACCCTCTCGGCCAACGCAGCCGGTCGGGCTTCGATCCGTTGTGCGG
AGCCTTCCGCACATCCTTGCACCTGCGAACCCTGCTCCTGCGTGATGTCG
GCATGGACGACCTGGAGGCGGAAGGAGTGGCGTCGTTCTTGGCGCTCTCT
GTTCGCCTCGAAAAGCTGGATCTTTCTGAGAATCAGGTTTATTTGTTTAT
TATGTGCGAAAAATCGATCATAACCTGCGTGTTCTTTAGATCTTCTGATG
GCTCTAGCATTTTTGGGACCACGGACCGAGTCTTTGCTAGATTTCGGGAT
GAGCAACCGGCACGAGTTTAACGTGAAGACAACAACAGCAACAGCACCAG
CAACAACAACAACAAAAACAACAACAACAACAACAACAACAACAACAACA
AAGCAATATCATCTGAGCGAATATGCCTAGCAGGTGGGTAGTACATGCGT
TTTGATCGAAGCAATCTCAGACGCAGTCGTGTCGTTGTTGTGACGAACAC
ATGCTCAAATCACATACGGAGTATTGTCGATGACAACACGCTCTGTCTGA
GCGTATTCATCGATGTCCTTCCCTCGGCTTAATAGATTTTGGCATGCTAC
ACCAACAAACCCCTTCACCGGTCGTTCCCTAACCCCCAACAGCTGGGAAT
CCAGTACGAAGGCAACTTGGGTTCTTTCCCCCCTACGGCCTATTTTTCTG
TTTGATAGCTACACGTGCGCGGCGCAAGGTGCCTCGCCGGAGCGCTGCGC
TCGAATGGATCGCTGTCGTCGCTGCTCCTGGGACACAACCGAATCGGGAA
TGAGGGGGCGCTGTTGCTGGCGGGTAGCGTTCCGCATGCCGCAAGCCTGG
TCGAACTAGAGTAAGAGAGATAACATAACGTCTGGCTGGCCAGCCGCACT
CACGTGTGTCATGGTGACATTGTGCTTTCGATTTCTATGCGTTCTAGACG
CTCTTGTTGTGTGTCTCTCATCACCTTCGTCACTGCGGCACTTGTCATGA
CTACAATCATCAAGGTGATTTCCTTGGTCACAAGCGCCCACTTGCAAGAG
CCGTTTCGCTTCTAGAATTTTACAGGAGCGGCTTCTAGCAATCTGCGAGA
CGAATCCTTTCAGCTCCAAAAACATAAACTCAACGAAACGAGAATGCTGT
CTCAGAAAATGAGCGACATGAGAACGAGGTGGGGCTACCTCATACACCAC
CTCCTAGCCGATTGCAAGCCCTTGTGATGGTGGTAGACAGAACGGTGGAC
CTTTGATCTAACACGTCATTTCAGCAGAGTAGAGAACCTCTTCCTTTGCG
AGTCAATCTGACCATCTCTCTGCTCACACCCATTCTACGAAGAAAATACT
TCCAGGTATCCGCCCAACCTGCCTGCCGGATAGTGTGTTACCCCCTCCTA
GAAGATATCCTCAGGAAAAACTTGTTCCGTATCCCGGACTATTGCTCGTT
CTCGCGAAAAAAAGGGCAGTGCCGAACTCTCGAAGTACCTCTGCTGCCCG
GCCCGCATAAATACTTTGTCGTGTATTCTCAGCGTGTCGTCGAACGGGCT
GACTGGTGGCAACAACGGGGGTGGCAGCGGTGGTTACACCAAGAAGAGCG
TGAAGGAAGGGTTCATAGAAGCGGCGCTGGCGTCCTTCTCCATCGAAACC
ATTAGGCGAGTGCCACCGTACAACGAGAGAGCCATCGTGTTGATTGACAC
CAACCGTGCGCGGATTGACTCGTCTTGCGGCACTTGCTTATTTGAAGATA
GTTGAGGATCAGAGTGTTTTCTTTCTTATGAAGAAAGAAGAACAGCACAC
TTCTCGTTCGGGGTAAAATGTTTTGGATCCCTGAATTACTGTATGTTGGT
TCCTTAGGGTTTTCGAGTTGTGGGCACTACAAGGGCTCGAATTTGCCGAA
ACCGCAACAAAACCGAGAGAGAAATACGACTTCCCATGATTTCTTATACC
TGCTCCGTGGCGGAGCAATAGCATTTTTTGTTTCTGGCTGTGTAGGAAAG
GTACTGTACGTACGTCAGCGGGCCGTTGGTTGAAGAGGAAAACACTTTCA
AGAATAGGCCATACTGCAATGGTGCCCATCTCTTACTCCAGCCAGCATCT
ACGTGTTGTACCCGCGGCCTTCTCCTCGCCCACCGGCTTTCCTGTGCAGG
CTGTCGGGGAACGATATCCCCCCCTCTGACGTTGAGGAGATGCAGGAGTA
CGCCTCATCGAACGTCGAACTACGGGCCGTCGCAGATGTGAGAGAAGGGA
GGGACACAGCGATGAGTGGTGCCGCCCTTTGGCAAGCAAAGAAATAACGG
TTCACATCCATTCACGATCCCGCTCGTCATCACACATGAGCGTGATTCAC
CCCTCTTTGAGGAACACAGGCCCGTCACCAAGCATGATGGGGTGTCGAAA
AACTTGTGGCGAGGCAGTCTTCACGAAACACCTGGAAATGCCAAGAGTTT
TCATTCTGCCCAAAGTGAAACAGCACGCAATTTCCACTCATGTTCTGTTT
TCATCTTGAAAATGCGCCCATGTTGTCCGTCCCCAACCACCTCGTAGTCA
ACAGATGCGTACATTCTCCTTAGGGCTGCGCCCCGAAGGTGTTAGTCGAC
GAAATTGTGGCGCACAGCATTCTATTGTTGGCGTTTTTCGAACACATTCA
ATGTTGTGCCTAGAAACAGCTGCACTTGGTACGCAATGTACAAAGTAGCC
AGCGATTTAGCAACACATCTGTGAAAAGAGGGGATCGCCCTTGACATACT
CTAAGGAAGGTGGGACTTTTCGCCATGATAACCGCTGGGGGAGGTTGACG
GGAGGACTCCTTCGTCTTTAGCCGGGCTGAGTGCGTCACAACGTTCTGGG
CGGAAAGGAAGAAAAACGACTATTTATTATTGTACAATACTATAGCCAAT
ATACCAGTACGTACAGGTCGCCTCTGCATTAGACTACACGCGAGTGAGTA
CGTATGTGCTTTCATTCACAGGCGCCGGAGAGCTACGACTTGTGGCAAGC
ATCCGAAATAGTCGAAACCTGCCTGGTGGCCAAGTTCGACCGCCTGCCAC
CGGGCGTTGCGGACGCCCTGAAGAAAAACCCCACCTTTGTCGAAGAAGAG
GGGCCGATGCGAGAGGCGGTCTTGGCTGCCTCGCCCCTCACCAAGCAAGA
GCTATTGAGGAACAGCCCCGGAGCGGAGGATATCGCCATGAAGGTTGGAT
GTGGATGTGGAGGGAGGGGGAGGCTGTGA
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Coding sequence (CDS) from alignment at Scaffold_390:184300..189778+

>EsuBft946_10a-0001 ID=EsuBft946_10a-0001|Name=EsuBft946_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1056bp|location=Sequence derived from alignment at Scaffold_390:184300..189778+ (Ectocarpus subulatus male Bft15b)
ATGGACGATGTCGGACGTATGTTCGACTGGGAGGATGAGGCCCTCGAGGA
ACGCTGCCTAGATTTACAGGATAAGAATATCAGCACGAGCGACATCGGCG
CGTTCCTCCAGTCGTTGGACGGGCTCCATGACGTCAGTTCTTTAAAGGTC
GTCAACCTAGCCGGCAATCGTGTGGGGTCCAAACGCGAGAGCATGGTGCC
GATCGATACCCTGCTCACAGCATCTGCAAGAAGTCTCACGGCGCTGAATT
TTTGTGGCAATCCGCTTGGGGAGGAGCAGCGATACGTTGGGCCTTTGGTG
GCGCTGGCAGACACGCTGACGAGTTTGTCTCGCCTCAAGGTGCTGGACCT
GTCGAACTGCACCCTTATCGGCCTGTCGGGGAACCGTTACCACGGCCTCA
ACGCGCTTGGAAACACCTTGGCGAGTGGCAAGAAATTGACACACCTCAGA
ATATCTGGCAACCGCCTCCACAGTGAAGCCGCGCTGATTGTCGGCGGCTG
GTTGCCCTCTTTGCCCAAGCTGCGGTACCTCGACTTGTCCAGCCGGTCGG
GCTTCGATCCGTTGTGCGGAGCCTTCCGCACATCCTTGCACCTGCGAACC
CTGCTCCTGCGTGATGTCGGCATGGACGACCTGGAGGCGGAAGGAGTGGC
GTCGTTCTTGGCGCTCTCTGTTCGCCTCGAAAAGCTGGATCTTTCTGAGA
ATCAGGAAAGGCTGTCGGGGAACGATATCCCCCCCTCTGACGTTGAGGAG
ATGCAGGAGTACGCCTCATCGAACGTCGAACTACGGGCCGTCGCAGATGC
GCCGGAGAGCTACGACTTGTGGCAAGCATCCGAAATAGTCGAAACCTGCC
TGGTGGCCAAGTTCGACCGCCTGCCACCGGGCGTTGCGGACGCCCTGAAG
AAAAACCCCACCTTTGTCGAAGAAGAGGGGCCGATGCGAGAGGCGGTCTT
GGCTGCCTCGCCCCTCACCAAGCAAGAGCTATTGAGGAACAGCCCCGGAG
CGGAGGATATCGCCATGAAGGTTGGATGTGGATGTGGAGGGAGGGGGAGG
CTGTGA
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