EsuBft945_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft945_5a-0001
Unique NameEsuBft945_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_526contigScaffold_526:49662..50827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FHW5
ProteomeIdEsuBft945_5
Protein domainsPTHR21255
Protein domainsIPR005334
Ownerapollo_admin@sb-roscoff.fr
Notetctex1 domain-containing protein 2 os:homo sapiens gn:tctex1d2 pe:1 sv:2 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length612
Hectar predicted targeting categoryother localisation
Evalue1.66e-40
EggNOG OGsKOG4108@1|root,KOG4108@2759|Eukaryota
Ec32 ortholog descriptionTctex-1
Ec32 orthologEc-12_006150.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptionregulation of intraciliary retrograde transport
COG categoryO
Cross References
External references for this mRNA
DatabaseAccession
GO0005515
GO0005815
GO0036126
GO0001669
GO0008157
GO0005930
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft945_5aEsuBft945_5aEctocarpus subulatus male Bft15bgeneScaffold_526 49662..50827 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft945_5a-0001-exonagat-exon-9952Ectocarpus subulatus male Bft15bexonScaffold_526 49662..50078 -
EsuBft945_5a-0001-exonagat-exon-9953Ectocarpus subulatus male Bft15bexonScaffold_526 50435..50568 -
EsuBft945_5a-0001-exonEsuBft945_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_526 50767..50827 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft945_5a-0001-exonagat-three_prime_utr-23355Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_526 49662..50030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft945_5a-0001-cdsEsuBft945_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_526 50031..50078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft945_5a-0001EsuBft945_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_526 50031..50827 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft945_5a-0001 ID=EsuBft945_5a-0001|Name=EsuBft945_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=612bp|location=Sequence derived from alignment at Scaffold_526:49662..50827- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCAGGCTACTGTGCAGACCAAGAGGATTTGCGACGAAATAAAAAA
TGGGCTAAAGGAGATGAACCTCCCGAGATACAAGTACGTGGTGCAAGTGG
TGATCGGAGAACAAAGGGGGGAAGGAGTGCGGATGGGTAGTCGCTGCTTT
TGGGACTCCGAAACAGACAACGTTGCAAGCGAGACCTACGTCAATGACAG
CGTTTTTTGCGTGGCGACGGCCTACGCAGTCTACCTCTGCTAACCACAGA
GTGTCGTAATAGCCGGAAGGAGGGGGGCGAGGTGGTCTTTCTTCTGTCCA
GGAGGAAACCCAAGACGGCAATGTCGTGTGCCCTCTCTATCGTGATTCGT
GGTCCGTGGGCGACTGCCGGGAACGACCCTAACGAGCTAGAAATTGGGCA
ACTTAGGAACTCCCGCTCGGAATATGCGTACGGTCAAGGCCTGTAGACAG
CGGTTATTAGTGTTCATGCGTGAGACAACGGAGTGTTGGCAATGTCCCGG
GAGCGGGTCGATTCAGTCTCGTACCATAGAGTGGAAGAGGACAGGGTTGT
TGCTGAGTGTGCGACAAGAATATTGTCTTCTTCTCATAGTTGACGAGTTT
GGTAGGGGCGAT
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protein sequence of EsuBft945_5a-0001

>EsuBft945_5 ID=EsuBft945_5|Name=EsuBft945_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=80bp
MDQATVQTKRICDEIKNGLKEMNLPRYKYVVQVVIGEQRGEGVRMGSRCF
WDSETDNVASETYVNDSVFCVATAYAVYLC
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mRNA from alignment at Scaffold_526:49662..50827-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft945_5a-0001 ID=EsuBft945_5a-0001|Name=EsuBft945_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1166bp|location=Sequence derived from alignment at Scaffold_526:49662..50827- (Ectocarpus subulatus male Bft15b)
ATGGACCAGGCTACTGTGCAGACCAAGAGGATTTGCGACGAAATAAAAAA
TGGGCTAAAGGGTGAGTGAGTGCATGTTCACACCAGGAACGACATTGACT
TTGGTGCCATATTTTGGATGGAGCGTCATACGTGTAACTCAACGTGTGTT
TACAGCCAAGCCCCTCTGACATGTAAACAGTGTACCCATTGGTTGTGGCA
CCATTGAAGACAACATACCTGCTGTTCGTTCACGCGGATGCTGTTCCATA
TTGGCCCAGAGATGAACCTCCCGAGATACAAGTACGTGGTGCAAGTGGTG
ATCGGAGAACAAAGGGGGGAAGGAGTGCGGATGGGTAGTCGCTGCTTTTG
GGACTCCGAAACAGACAACGTTGCAAGCGAGACCTACGTCAATGTGAGGG
TAGTGCGGCCGCCGACGTACCTAACTACAATCGTGTGCATGGGGTGCGGG
GCGGTGGAGAGGACATTCTGCTGTCGTTGCACCCTGCGTTTCAGGCTATT
TGTGCCAGTCGCGGTATCATCGAATTTCAACCCAAGTGCTTTGCTCCTTG
TACCAAAGACCGGTTAATAATCTCCGTGTGAGTAAAGTGTCGATTGGTGT
AACCTAGGGGATATCCATGCTCTGTGCAGCCCTGAGGTGAATCTTCCTCG
TGGCAGTAAAACCTTCGCATGGACCCACTTATTCGTCGTCGTGAGCTCGT
ACAACTAACTACCGTTGTCCTTTTCCTGCGGCTGTGCGATGCGGAGCAGG
ACAGCGTTTTTTGCGTGGCGACGGCCTACGCAGTCTACCTCTGCTAACCA
CAGAGTGTCGTAATAGCCGGAAGGAGGGGGGCGAGGTGGTCTTTCTTCTG
TCCAGGAGGAAACCCAAGACGGCAATGTCGTGTGCCCTCTCTATCGTGAT
TCGTGGTCCGTGGGCGACTGCCGGGAACGACCCTAACGAGCTAGAAATTG
GGCAACTTAGGAACTCCCGCTCGGAATATGCGTACGGTCAAGGCCTGTAG
ACAGCGGTTATTAGTGTTCATGCGTGAGACAACGGAGTGTTGGCAATGTC
CCGGGAGCGGGTCGATTCAGTCTCGTACCATAGAGTGGAAGAGGACAGGG
TTGTTGCTGAGTGTGCGACAAGAATATTGTCTTCTTCTCATAGTTGACGA
GTTTGGTAGGGGCGAT
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Coding sequence (CDS) from alignment at Scaffold_526:49662..50827-

>EsuBft945_5a-0001 ID=EsuBft945_5a-0001|Name=EsuBft945_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=243bp|location=Sequence derived from alignment at Scaffold_526:49662..50827- (Ectocarpus subulatus male Bft15b)
ATGGACCAGGCTACTGTGCAGACCAAGAGGATTTGCGACGAAATAAAAAA
TGGGCTAAAGGAGATGAACCTCCCGAGATACAAGTACGTGGTGCAAGTGG
TGATCGGAGAACAAAGGGGGGAAGGAGTGCGGATGGGTAGTCGCTGCTTT
TGGGACTCCGAAACAGACAACGTTGCAAGCGAGACCTACGTCAATGACAG
CGTTTTTTGCGTGGCGACGGCCTACGCAGTCTACCTCTGCTAA
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