EsuBft944_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft944_8a-0001
Unique NameEsuBft944_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_73contigScaffold_73:129220..131469 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft944_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length160
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft944_8aEsuBft944_8aEctocarpus subulatus male Bft15bgeneScaffold_73 129220..131469 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft944_8a-0001EsuBft944_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_73 131221..131469 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft944_8a-0001-exonEsuBft944_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_73 129220..129662 -
EsuBft944_8a-0001-exonagat-exon-20190Ectocarpus subulatus male Bft15bexonScaffold_73 129893..130611 -
EsuBft944_8a-0001-exonagat-exon-20191Ectocarpus subulatus male Bft15bexonScaffold_73 130921..131004 -
EsuBft944_8a-0001-exonagat-exon-20189Ectocarpus subulatus male Bft15bexonScaffold_73 131108..131469 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft944_8a-0001-exonagat-three_prime_utr-23342Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_73 129220..129662 -
EsuBft944_8a-0001-exonagat-three_prime_utr-23343Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_73 129893..130611 -
EsuBft944_8a-0001-exonagat-three_prime_utr-23344Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_73 130921..131004 -
EsuBft944_8a-0001-exonagat-three_prime_utr-23345Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_73 131108..131220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft944_8a-0001-cdsEsuBft944_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_73 131221..131469 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft944_8a-0001 ID=EsuBft944_8a-0001|Name=EsuBft944_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1608bp|location=Sequence derived from alignment at Scaffold_73:129220..131469- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAACGAGTATGGGGGGTGGGAGCATCAGCCACAGTACCAGCAACCA
TAGCCANCCTCACGGCGGCTACGGAGGACAGCAGCATCATGGACATCCAG
CTCCCCATCGTACACCGCAGCAGCAGCGGCGGCCCCAGTACGGGCATGCA
AATGTGAGTCAACCGTATGGTGCCGCGCCTCATGAGGGGACCGCGTATGG
TAACGAGTATGGGGGGTGGGAGCATCAGCCACAGTACCAGCAACCATAGC
CAGACTACAGCTTCCAGCAGCAGCCGTATTACCCGCCTCCGACAACGTAC
TGCCAGCAGCAGCAGCAGCCACCGCCGGAGCCTCCGCCACCGCCGTCGTT
CCAGCAGCAGCCCAGCATTCTCGACCCATGCCCCGTACCATTCGCCTCCT
CCCGACGCAGCCGGATCCCCTGGGCATCTTCACTTCCTCAAGACACACAC
GTTTTGTGTCACAAGGCGAGATCTTTCCAAATGTGGTAGCGCGTGAGAAT
GGTAGTGGTTTCGCTTTGTCTGTTCAGAGTCGCCCTTCGCAGATTGGTAG
AGAGCAATTTTGGGCCGACAGCGGCGCGAGCAACACGTTTGTCAGCAGTA
GCGAAAACATGTTCGACATGAAGCCAATCCCAGCAGGAAAAGAGTTCATC
CAAGTAGGGAATGGTGCCTATCTGCGCGTGCAATGTGTTGGTAGCATCAA
CATGGCATTTCACATGCCTGGCCCTTCGGGCGAGACCGATTTTTGCGTGC
AGATGTCGGACGTGTACGTAGTCCCCGGCATCACGTTCAATCTGTTTTCT
CTGCACCATACGCAGCGTAGGCAGAGAACTACGTTGGATGAAATGGCGTG
CATCTATTCAATGGCCAGCTTTCCTTTGCTCCTCCGATGTAGGATGTTCT
CTCTGGGCCACTCGCTTGCTTCCCACGTATACCGGTAATGCTGTAACCCT
CGGTCCCGATGCCCTCCCTCGTGTGTCTCCCCAAGCTCCCCCGCCTAGCG
TTGGGACAGGCCTTGTTGTCGCGAACCCCCCTTTCCCCCCCACCACAGGA
GCGGGCACTCATGCGAGTACGAGCTTCCCGTCCACCGGTGGAGTCGCTGC
CGGTGTTGTACCTTCGAGTTCGAGTGCGAATCCGAGCTTCCAGTCCGCCG
GTGGTGCCGCTGCCGCTGTTGTACCTTCGTCTGCGAGTGCGACTTCGAAC
GTCCCATCCACCACGTCCGGTGTAGTGATCCCGCATTGTGCATTCCCGCC
AATCGACGTAGATGTAGTGCCAACGATTATTGCCGACTACCAGCCTGTAA
TCACAGCTGCCGTAGCGTCGTCTGAGATTGCTTCTCCCTCCGTCGTTGAT
CCGAGCGGTTTTCTTGAAGTTGTGATCAACCCCCTCATCCCCCAGGACCA
CTTCCCTCTCATGGATATGAGCATGTTCCTTGATGTAGGCCTGATGGATG
GCACAGACTCGGTCCCACAGGGTGATTTTTTTCCGGATGCCCTTGATGTT
TGCGACTCTGCAACACCCCCTCCCCCCGCGTTTGCCGTGATGAGTGATGA
ATTGGATTGCCTGAAGGGTTTTGTTGCTGGATGCAGTGAGCAGCAAACCG
TAGCTCCC
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protein sequence of EsuBft944_8a-0001

>EsuBft944_8 ID=EsuBft944_8|Name=EsuBft944_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=82bp
MVTSMGGGSISHSTSNHSXPHGGYGGQQHHGHPAPHRTPQQQRRPQYGHA
NVSQPYGAAPHEGTAYGNEYGGWEHQPQYQQP
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mRNA from alignment at Scaffold_73:129220..131469-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft944_8a-0001 ID=EsuBft944_8a-0001|Name=EsuBft944_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2250bp|location=Sequence derived from alignment at Scaffold_73:129220..131469- (Ectocarpus subulatus male Bft15b)
ATGGTAACGAGTATGGGGGGTGGGAGCATCAGCCACAGTACCAGCAACCA
TAGCCANCCTCACGGCGGCTACGGAGGACAGCAGCATCATGGACATCCAG
CTCCCCATCGTACACCGCAGCAGCAGCGGCGGCCCCAGTACGGGCATGCA
AATGTGAGTCAACCGTATGGTGCCGCGCCTCATGAGGGGACCGCGTATGG
TAACGAGTATGGGGGGTGGGAGCATCAGCCACAGTACCAGCAACCATAGC
CAGACTACAGCTTCCAGCAGCAGCCGTATTACCCGCCTCCGACAACGTAC
TGCCAGCAGCAGCAGCAGCCACCGCCGGAGCCTCCGCCACCGCCGTCGTT
CCAGCAGCAGCCGTATTACCCGCCTCCGACAACGTACTGCCAGCAGCAGC
AGCAGCCACCGCCGGAGCCTCCGCCACCGCCGTCGTTCCAGCAGCAGCCG
CAGCAGCAGCCACAGCAGCATTCTCGACCCATGCCCCGTACCATTCGCCT
CCTCCCGACGCAGCCGGATCCCCTGGGCATCTTCACTTCCTCAAGACACG
TTTTGTGTCACAAGGCGAGATCTTTCCAANCTCGACCCATGCCCCGTACC
ATTCGCCTCCTCCCGACGCAGCCGGATCCCCTGGGCATCTTCGCTTCCTC
AAGACACGTTTTTTGTCACAAGGCGAGATCTTTCCAAGTGTGGTAGCGCG
TGAGAATGGTAGTGGTTTTGCTTTTTCTGTTCAGAGTCGCCCTTCGCAGA
TAGGTAAAGGCAATTTTGGGCCGACAGCGGCGCAAGCAACACGTTAGNCC
GTACCATTCGCCTCCTCCCGACGCAGCCGGATCCCCTGGGCATCTTCGCT
TCCTCAAGACACGTTTTGTGTCACAAGGCGAGATCTTTCCAAATGTGGTA
GCGCGTGAGAATGGTAGTGGTTTCGCTTTGTCTGTTCAGAGTCGCCCTTC
GCAGATTGGTAGAGAGCAATTTTGGGCCGACAGCGGCGCGAGCAACACGT
TTGTCAGCAGTAGCGAAAACATGTTCGACATGAAGCCAATCCCAGCAGGA
AAAGAGTTCATCCAAGTAGGGAATGGTGCCTATCTGCGCGTGCAATGTGT
TGGTAGCATCAACATGGCATTTCACATGCCTGGCCCTTCGGGCGAGACCG
ATTTTTGCGTGCAGATGTCGGACGTGTACGTAGTCCCCGGCATCACGTTC
AATCTGTTTTCTCTGCACCATACGCAGCGTAGGCAGAGAACTACGTTGGA
TGAAATGGCGTGCATCTATTCAATGGCCAGCTTTCCTTTGCTCCTCCGAT
GTAGGATGTTCTCTCTGGGCCACTCGCTTGCTTCCCACGTATACCGGTAA
TGCTGTAACCCTCGGTCCCGATGCCCTCCCTCGTGTGTCTCCCCAAGCTC
CCCCGCCTAGCGTTGGGACAGGCCTTGTTGTCGCGAACCCCCCTTTCCCC
CCCACCACAGGAGCGGGCACTCATGCGAGTACGAGCTTCCCGTCCACCGG
TGGAGTCGCTGCCGGTGTTGTACCTTCGAGTTCGAGTGCGAATCCGAGCT
TCCAGTCCGCCGGTGGTGCCGCTGCCGGTGTTGTACCTTCGAGTTCGAGT
GCGAATCCGAGCTTCCAGTCCGCCGGTGGTGCCGCTGCCGGTGTTGTACC
TTCGAGTTCGAGTGCGAATCCGAGCTTCCAGTCCGCCGGTGGTGCCGCTG
CCGGTGTTGTACCTTCGAGTTCGAGTGCGAATCCGAGCTTCCAGTCCGCC
GGTGGTGCCGCTGCCGGTGTTGTACCTCCGAGTGCCAGTGCGAGTCCGAG
CTTCCAGCTGTTGTACCTTCGTCTGCGAGTGCGACTTCGAACGTCCCATC
CACCACGTCCGGTGTAGTGATCCCGCATTGTGCATTCCCGCCAATCGACG
TAGATGTAGTGCCAACGATTATTGCCGACTACCAGCCTGTAATCACAGCT
GCCGTAGCGTCGTCTGAGATTGCTTCTCCCTCCGTCGTTGATCCGAGCGG
TTTTCTTGAAGTTGTGATCAACCCCCTCATCCCCCAGGACCACTTCCCTC
TCATGGATATGAGCATGTTCCTTGATGTAGGCCTGATGGATGGCACAGAC
TCGGTCCCACAGGGTGATTTTTTTCCGGATGCCCTTGATGTTTGCGACTC
TGCAACACCCCCTCCCCCCGCGTTTGCCGTGATGAGTGATGAATTGGATT
GCCTGAAGGGTTTTGTTGCTGGATGCAGTGAGCAGCAAACCGTAGCTCCC
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Coding sequence (CDS) from alignment at Scaffold_73:129220..131469-

>EsuBft944_8a-0001 ID=EsuBft944_8a-0001|Name=EsuBft944_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=249bp|location=Sequence derived from alignment at Scaffold_73:129220..131469- (Ectocarpus subulatus male Bft15b)
ATGGTAACGAGTATGGGGGGTGGGAGCATCAGCCACAGTACCAGCAACCA
TAGCCANCCTCACGGCGGCTACGGAGGACAGCAGCATCATGGACATCCAG
CTCCCCATCGTACACCGCAGCAGCAGCGGCGGCCCCAGTACGGGCATGCA
AATGTGAGTCAACCGTATGGTGCCGCGCCTCATGAGGGGACCGCGTATGG
TAACGAGTATGGGGGGTGGGAGCATCAGCCACAGTACCAGCAACCATAG
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