EsuBft944_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft944_2a-0001
Unique NameEsuBft944_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_73contigScaffold_73:179627..180115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft944_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length48
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft944_2aEsuBft944_2aEctocarpus subulatus male Bft15bgeneScaffold_73 179627..180115 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft944_2a-0001-exonEsuBft944_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_73 179627..180115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft944_2a-0001-cdsEsuBft944_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_73 179627..180115 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft944_2a-0001EsuBft944_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_73 179627..180115 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft944_2a-0001 ID=EsuBft944_2a-0001|Name=EsuBft944_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=489bp|location=Sequence derived from alignment at Scaffold_73:179627..180115+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCAGAAATGGAGGCAACATCGGGAACTGGAGGCGGAGGCAGCAT
CTGGAGTGACGGATCCACAAACCTGGCCAACGTCATCAGAGGACTCCCCA
AGTTCGATGGAACGAAACCAGAGGATTTCAACGACTGGATGAAGAAATTG
GGTGTAGTCGTCGGCGTTACTCAGAGGGACATCATGCCACTTCTCAAGGG
AATGCGCGGGCCTGATCCCTCGGTCACCACCTTCGCCGCATACGGGAGAG
CAAACGAAGACCTCTACGAAATCCTATTCTGCCTCGTCGAACTGCCGGCT
GTACTAACCGTACACAAGCACGAAGACGACACCGGCCTTAGCGGCGACGG
GCAGGCAGCATTCGCGGAACTGAAGGCCAACTACAATCGAGTGACAGATG
AAGTGATCAGGGCTAAACTGGACGACCCGGAAAGGACGGGCAAGGAGGCA
GGAGAGAACCCGGACGATTTTTTCAACAAGAAACANNNN
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protein sequence of EsuBft944_2a-0001

>EsuBft944_2 ID=EsuBft944_2|Name=EsuBft944_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=163bp
MKPEMEATSGTGGGGSIWSDGSTNLANVIRGLPKFDGTKPEDFNDWMKKL
GVVVGVTQRDIMPLLKGMRGPDPSVTTFAAYGRANEDLYEILFCLVELPA
VLTVHKHEDDTGLSGDGQAAFAELKANYNRVTDEVIRAKLDDPERTGKEA
GENPDDFFNKKXX
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mRNA from alignment at Scaffold_73:179627..180115+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft944_2a-0001 ID=EsuBft944_2a-0001|Name=EsuBft944_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=489bp|location=Sequence derived from alignment at Scaffold_73:179627..180115+ (Ectocarpus subulatus male Bft15b)
ATGAAACCAGAAATGGAGGCAACATCGGGAACTGGAGGCGGAGGCAGCAT
CTGGAGTGACGGATCCACAAACCTGGCCAACGTCATCAGAGGACTCCCCA
AGTTCGATGGAACGAAACCAGAGGATTTCAACGACTGGATGAAGAAATTG
GGTGTAGTCGTCGGCGTTACTCAGAGGGACATCATGCCACTTCTCAAGGG
AATGCGCGGGCCTGATCCCTCGGTCACCACCTTCGCCGCATACGGGAGAG
CAAACGAAGACCTCTACGAAATCCTATTCTGCCTCGTCGAACTGCCGGCT
GTACTAACCGTACACAAGCACGAAGACGACACCGGCCTTAGCGGCGACGG
GCAGGCAGCATTCGCGGAACTGAAGGCCAACTACAATCGAGTGACAGATG
AAGTGATCAGGGCTAAACTGGACGACCCGGAAAGGACGGGCAAGGAGGCA
GGAGAGAACCCGGACGATTTTTTCAACAAGAAACANNNN
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Coding sequence (CDS) from alignment at Scaffold_73:179627..180115+

>EsuBft944_2a-0001 ID=EsuBft944_2a-0001|Name=EsuBft944_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=489bp|location=Sequence derived from alignment at Scaffold_73:179627..180115+ (Ectocarpus subulatus male Bft15b)
ATGAAACCAGAAATGGAGGCAACATCGGGAACTGGAGGCGGAGGCAGCAT
CTGGAGTGACGGATCCACAAACCTGGCCAACGTCATCAGAGGACTCCCCA
AGTTCGATGGAACGAAACCAGAGGATTTCAACGACTGGATGAAGAAATTG
GGTGTAGTCGTCGGCGTTACTCAGAGGGACATCATGCCACTTCTCAAGGG
AATGCGCGGGCCTGATCCCTCGGTCACCACCTTCGCCGCATACGGGAGAG
CAAACGAAGACCTCTACGAAATCCTATTCTGCCTCGTCGAACTGCCGGCT
GTACTAACCGTACACAAGCACGAAGACGACACCGGCCTTAGCGGCGACGG
GCAGGCAGCATTCGCGGAACTGAAGGCCAACTACAATCGAGTGACAGATG
AAGTGATCAGGGCTAAACTGGACGACCCGGAAAGGACGGGCAAGGAGGCA
GGAGAGAACCCGGACGATTTTTTCAACAAGAAACANNNN
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