EsuBft943_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft943_8a-0001
Unique NameEsuBft943_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:507454..509122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LII1
ProteomeIdEsuBft943_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length132
Hectar predicted targeting categoryother localisation
Evalue2.9e-10
EggNOG OGs2E18F@1|root,2S8KF@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionMethyltransferase domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft943_8aEsuBft943_8aEctocarpus subulatus male Bft15bgeneScaffold_420 507454..509122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_8a-0001EsuBft943_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 507946..508149 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_8a-0001-exonagat-exon-28895Ectocarpus subulatus male Bft15bexonScaffold_420 507454..507525 +
EsuBft943_8a-0001-exonEsuBft943_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 507870..509122 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_8a-0001-exonagat-five_prime_utr-15179Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_420 507454..507525 +
EsuBft943_8a-0001-exonagat-five_prime_utr-15180Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_420 507870..507945 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_8a-0001-cdsEsuBft943_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 507946..508149 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_8a-0001-exonagat-three_prime_utr-23335Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_420 508150..509122 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft943_8a-0001 ID=EsuBft943_8a-0001|Name=EsuBft943_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1325bp|location=Sequence derived from alignment at Scaffold_420:507454..509122+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGTTGAAGTGGGCGCAGAAGCAGCCCCTCGGTCAAAAAGCACAAAACCA
AGAGATCAAGCAACACCCAACTCTGGCGGCATAGAGCACCAACGTACGCC
CGACAATCCACCGTCGTGCAGCCCCAAGATCGCAACCTCCATAGTATCAT
GCCTCCCACGGTGATTGCAACGGGCGACAAGGTAGACGAGATCACCTCCG
TAGTCCAGGGCTACTACGACTGCGACAACGTCTTCAACTTCTACCGGCAG
GTGGGTACAACAATGCTACCGTTGGGCGTCGGTGGTGCGCGCTTTCCGCA
TCTTTACGGATTGATCATCGGTATTTTGCGCACCTTCAACCACAGCGGGT
AGGAGGGTCGAGGCAGGGTATTTTTTCATTGCACACGGCACATGACACTA
ATGAGGGGCTTCTCCACAAGCTCTCCCGGCAATTGTTGGCATCATTGACC
CACAGCAGAGGACCCCCGAGGACCTTTGGTTGTGAGTTTGAGAACCAACC
GACCATCCTCGTCTCCGCGATGAAGTTAAATTCGTCCATCTGCTGTCGCT
CCGCATCAAAGTAAGTGCGGACCACAACTCAGCGCCCACATACATGCGCA
CACGTCAAACGATACGTGTATTGCCTTCGGCGTCTGTGCTGTGTTTCTTT
TTTTTCATGTCTTCCCTGCCTACTCTGCTGTGATGGGTACCTTCATCTCG
CTTTTGCTGTTGCTTTTGTTTTTGTGCTACATCTGGCTGTCTGCCCATCT
GCCGCCTCTTTGTCCTGTTTGCTCCGTTACTCCCACACCCTGGTGCGTAG
TGACTGGTGCTGGTACTTTTTTTATTTTTATCCGTTGATATTTTCTTTAG
GCGGGTGTGGAAGGGAAGCGTCCTTTATATTTGTTTTGTTTTAGTCTATG
CATACTTTGATCGGTTTCCGAGGGCCTTTTCTCGAACGGTCGGTGTGGTA
CCTGTTCTTTCCTTTCCATTATTTTGTTTTCTTTCTCCGAGTGGTTTGTA
CCCTATTTTTGTTTTCTTTCCCCGCGGCGTCAATGTGCCGGGTTTGGAGA
CCACGGGCTCCCCATTATTGTGGACTAGTCTAGTCTAGACTATGGAGCTA
ATGTGAGAAACAACAACAAGAAACAGCAAAACATGGCAGCAGGCTGGCGC
CCCGGTGTAGCAAGGTCATGTAGGATCATGGGTGCTAATCAGGGCATTGC
TGTTGTTTGCATAGCGGCCAAATGGTCGGGTTGTACATTGTGGTGCCGCG
CGACCTACATTATCTCGACCTACATTACCTGTGTTCATTAATTGTGGTCT
ATATACTCTCCCTTCTTCCCCTCGC
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protein sequence of EsuBft943_8a-0001

>EsuBft943_8 ID=EsuBft943_8|Name=EsuBft943_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=67bp
MPPTVIATGDKVDEITSVVQGYYDCDNVFNFYRQVGTTMLPLGVGGARFP
HLYGLIIGILRTFNHSG
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mRNA from alignment at Scaffold_420:507454..509122+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft943_8a-0001 ID=EsuBft943_8a-0001|Name=EsuBft943_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1669bp|location=Sequence derived from alignment at Scaffold_420:507454..509122+ (Ectocarpus subulatus male Bft15b)
TTGTTGAAGTGGGCGCAGAAGCAGCCCCTCGGTCAAAAAGCACAAAACCA
AGAGATCAAGCAACACCCAACTGTGAGTGACTGCCTCGCCTCAAAGAAGA
CAAGAGGAGCAGCAGAAACTGCGCCCCTCCCCTCTCGGGTACATACAAAC
GCTCTCATGAGACAAAATGTCTGTAGAATAGTATACATACATTTCTGTCC
TTGCGGTGAAAATGGAATAATCTCATGTTTTTCGTTTTTCGATCTACTTG
GAAGGAGACAAGTAGTCGGCGGTAATGGCAGGGCATGGTCAAAGTATCAA
GTATCGAGGGTGGTATCCGGCCGTGCGGCTGAGCTAAGGCCATTGCTCAA
CGTTCCGTGCTCGGTGCTGTCCGCCTGCTGCTTCCGCTCCTCGTTCTGTC
TGTCGTTGTTTGCCAGCTGGCGGCATAGAGCACCAACGTACGCCCGACAA
TCCACCGTCGTGCAGCCCCAAGATCGCAACCTCCATAGTATCATGCCTCC
CACGGTGATTGCAACGGGCGACAAGGTAGACGAGATCACCTCCGTAGTCC
AGGGCTACTACGACTGCGACAACGTCTTCAACTTCTACCGGCAGGTGGGT
ACAACAATGCTACCGTTGGGCGTCGGTGGTGCGCGCTTTCCGCATCTTTA
CGGATTGATCATCGGTATTTTGCGCACCTTCAACCACAGCGGGTAGGAGG
GTCGAGGCAGGGTATTTTTTCATTGCACACGGCACATGACACTAATGAGG
GGCTTCTCCACAAGCTCTCCCGGCAATTGTTGGCATCATTGACCCACAGC
AGAGGACCCCCGAGGACCTTTGGTTGTGAGTTTGAGAACCAACCGACCAT
CCTCGTCTCCGCGATGAAGTTAAATTCGTCCATCTGCTGTCGCTCCGCAT
CAAAGTAAGTGCGGACCACAACTCAGCGCCCACATACATGCGCACACGTC
AAACGATACGTGTATTGCCTTCGGCGTCTGTGCTGTGTTTCTTTTTTTTC
ATGTCTTCCCTGCCTACTCTGCTGTGATGGGTACCTTCATCTCGCTTTTG
CTGTTGCTTTTGTTTTTGTGCTACATCTGGCTGTCTGCCCATCTGCCGCC
TCTTTGTCCTGTTTGCTCCGTTACTCCCACACCCTGGTGCGTAGTGACTG
GTGCTGGTACTTTTTTTATTTTTATCCGTTGATATTTTCTTTAGGCGGGT
GTGGAAGGGAAGCGTCCTTTATATTTGTTTTGTTTTAGTCTATGCATACT
TTGATCGGTTTCCGAGGGCCTTTTCTCGAACGGTCGGTGTGGTACCTGTT
CTTTCCTTTCCATTATTTTGTTTTCTTTCTCCGAGTGGTTTGTACCCTAT
TTTTGTTTTCTTTCCCCGCGGCGTCAATGTGCCGGGTTTGGAGACCACGG
GCTCCCCATTATTGTGGACTAGTCTAGTCTAGACTATGGAGCTAATGTGA
GAAACAACAACAAGAAACAGCAAAACATGGCAGCAGGCTGGCGCCCCGGT
GTAGCAAGGTCATGTAGGATCATGGGTGCTAATCAGGGCATTGCTGTTGT
TTGCATAGCGGCCAAATGGTCGGGTTGTACATTGTGGTGCCGCGCGACCT
ACATTATCTCGACCTACATTACCTGTGTTCATTAATTGTGGTCTATATAC
TCTCCCTTCTTCCCCTCGC
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Coding sequence (CDS) from alignment at Scaffold_420:507454..509122+

>EsuBft943_8a-0001 ID=EsuBft943_8a-0001|Name=EsuBft943_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=204bp|location=Sequence derived from alignment at Scaffold_420:507454..509122+ (Ectocarpus subulatus male Bft15b)
ATGCCTCCCACGGTGATTGCAACGGGCGACAAGGTAGACGAGATCACCTC
CGTAGTCCAGGGCTACTACGACTGCGACAACGTCTTCAACTTCTACCGGC
AGGTGGGTACAACAATGCTACCGTTGGGCGTCGGTGGTGCGCGCTTTCCG
CATCTTTACGGATTGATCATCGGTATTTTGCGCACCTTCAACCACAGCGG
GTAG
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