EsuBft943_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft943_7a-0001
Unique Name	EsuBft943_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_420	contig	Scaffold_420:522765..526252 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft943_7
Protein domains	IPR001878
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	303
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft943_7a	EsuBft943_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_420 522765..526252 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft943_7a-0001-exon	agat-exon-28894	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 522765..524917 -
EsuBft943_7a-0001-exon	EsuBft943_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 525285..525989 -
EsuBft943_7a-0001-exon	agat-exon-28893	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 526078..526252 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft943_7a-0001-exon	agat-three_prime_utr-23334	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_420 522765..524288 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft943_7a-0001-cds	EsuBft943_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_420 524289..524917 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft943_7a-0001	EsuBft943_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_420 524289..526252 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_420:522765..526252-
coding sequence from alignment at Scaffold_420:522765..526252-

spliced messenger RNA

>EsuBft943_7a-0001 ID=EsuBft943_7a-0001|Name=EsuBft943_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3033bp|location=Sequence derived from alignment at Scaffold_420:522765..526252- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGATTCTGAGGATGCTGCAGGAAAGGCAGCAGCTGCGGAGAGGGC
AGCAGCCACGGAGAAGGCGGTAGAGGAAATAAGTAAGACGCTTGCACTAA
CGATGGATAAGATAGCTGCATTAGAGAGTGCTGGGAAGGCAGCAGGTGGT
CAAGCTGGGTGGGCAGCTGGAGGAGAGAGAGAGGGGAAGAAGCCCCATGT
GTGGTACGGTGGACACCAGCAGCAGGTGACGAGAGGAGTGCAGCAGCAGA
GCAGCCGCCACAACCATGTCCTTACAAGGCACAGCCGGTACCAGCATCAG
CAGCAGCTGGTGCCCAACGAACGCCCACGCCCTCCCGCTGCTCCCCCTCC
CGAGCAGCAGCACCAATGCAGCTGCTGTGGAGAGAAAGGTCATGTACATC
AGGACTGCAAATTCAACCTCGCCCGCGGACTGTTTCAGCAGCGGAGGAAC
GGTGGCTTTGGCGGCGGGTCTGTGTTCCAGCAGCAGCAGCAGCAGCAACA
GCAGCAGAAGCCAGGCGTGGTGTATGGCAGCACTGGTGGATTTCAGCAGC
AGCCGCGGCAACAACAGCTGGCGGCTGGCTCCACCCGCGGTGTGGTTGGA
CAGGTGAGTGGTGGGGTGTTTATTGGCGAGAAGGGGGGGGGGGCTGCTGC
CGGTTCGTTTGTGGCGTCTTTGCTGGTGAAAGCCCCCGCCAACATATCTT
CTCCCAACGCAGTTAGGCACCCCGCCGCTCATTCTCCCCCGCGACCCACG
ACATCACGTGTAGCACCTGCAGTAGCGCGGAAACGCGCAGAACTGGATCT
CATGGAGGCCGGGTACAGTATAAGTGTAGCAANGGCAACAACAGCTGGCG
GCTGGCTCCACCCGCGGTGTGGTTGGACAGCAAACCATGCCGATGAGATC
CTTCCTGCTGCCCCATCTTCAACGATTGGGATTTGTGGAACGGCATCCGC
ACCGGCGGTCGCAACGGCGGCTTCGGCCAGAGCTGCGGCGGCAGGAGTAA
CGCCGCATGGAGCGACAACGGCAGTGGCTGCGACGGAAACGGCGGCGGTG
GGGACAGCAGTAGCAGCGGCGTCCCCGGTTGCCGCGTTGGCGCCGGGCAG
TCAAGATACGCGCGCCGACAGCGGCGGCCTGACCTGCAGCAGCGGTGGAG
ACAACGGCATCTACGGTTTCGAGAGGGGCGCGTCGTACCCTTTTGACCCG
GGAGGGTTATTTGCGCAGGAGGTGCGTGAGGAGGGAGATCACAACAGCGG
TGGTAAGGAGGACTGGAGCAGCGGTGGCCGCAGTAGCAGCAGCGGCGACG
GCGGAGATGGCGCGGCCTGGCATGGAGCGTCAACACATCCCTTTGACAGA
GGGAAGCGGTCCCGTGGAGGAGAGCGACCAAGGGGTCCGTGCTGGGAGTG
GACCTCCCGTTCGATCGAGGTAGAGATGCATGGGCACGTGCCGGGGGGTG
ATGCTTCGCACCAAGCGGCACCAGCGGGAGCGGCGCCAACGGCAACGGCA
GCAGTTTGAGCGGGGATGAGAGGGCGCGCGAGCGGGGGGAGAGTTTACCC
TTGTCTGTTTCCCCCCCGCCCACCCCTCCCGTGCCTCCCACAGCGCCACA
CCTGCAGCGAGCCCCGGCGACGTACGCGCAAGCTCATGCGGGGCGGGCAC
AGCGCCATTTGGGGAGCAGCCGAGAAGCGGGAGATGGATGGTCTGGTTGG
GGCGGGCACGTTCGAGCCGGCAGGAGGGCTCTAGCAACGAGGAACGAACG
TCATCTCTGCCAAATGGGTCTACACGTGGAAACCTGATGAATTCGGTGAT
GTGTTGCGTGCAAAGGCTCGGCTTGTCGCTAGGGGTTTCGGTCAGCGTGA
AGGTATTGACTATTTCGAGACTTTCCCCGTGCCCTACCCATCCGAGTATT
CGCCTCTTGTCTGCTATCGCGCGTGAAATGGGTTGGGACATGTCCCACTT
TGATGCTGATCAAGCGTTTGTGCAATCGAAGCTAAATGAGATCGTGTACG
TGCGTCTGCCGCAGGGTTGTGGGCCCCTTTCGGGTAAGATTGTGAGACTT
GCCCGTAGTCTTGAAGCAGGCGTCACGCACGTGGCGCCACCACCTTGTTC
GGGGCATGAAATCTCTTTGGGTTTGACCAATGTGCTGCTGATGCGTGTGT
TATGCGTTTGATCGAGGATGGTGTGCTTCCCATGGTAGTTGTGGTGCATG
TGGATGACATTTTTTCCATCGGGCGAAATAGTGGGTGTGACAGGTTTGGC
CGAGACTTGAACGCCTACGTTCCCATCACCAACCTCGGAGCGTTGCGCTT
GTGTGCGGGAGTTCGTTTTTCACGCGATTGGGATGCTGGTACGCTTACAT
TGTCGCAAGAAACTTTTGCTGTCAACTTGGTTGCGAAGTTTGGTGTCACG
CGCAACAAGGAGACCCCGATGCCTGTTGGAGTGAAGCTTGACGATTTTTC
TGCTGACGAACTTGATGGTCTTGAGCATTTTCGTTTTTTGGTAGGTCACC
TCACGTGGCTTGCTAACCAGACTCGGCCGGATATCCTTAATGCCGTGCGG
TCCGTTGCGAGATATTCCCATGCACCGTATATCATACACTGGCGGGCTGC
GTTGCATATTGCGATGTACGTTAAATTCACGAGTACTTTTGGTATTACAT
TTCAGCGGGGTTCACGGGAGGGTATCGATTTGCGCTTGTATGTTGACTCC
GACTATGCCAGCCGGGCCACTGACCGGCGGACGGTCTCGGGAGCAGTTGT
GATGTGCGGCGGTGCATGTGTTTCGTTTTTATGAAGGACGCAGAAAAGTG
TGACCCTGTCGTCGACGGAAGCAGAGTATGTTGCGATGGCTGACGGTGTG
AAGGAGACGATTTTCTTGTGGTATATTTGGGGTTTTATTGTTTCGGGTCG
CGATGTTGGGTGCACACTGGTGTTCGAGGATAACGAGAGCGCTCTTCACC
TTGCGGTCAACCCCGCCACCACACCGAACTCTGAGCACATCGACATTCGT
CACCACTTTCTTCGGGAGCGTGTAGCACGGGGA

protein sequence of EsuBft943_7a-0001

>EsuBft943_7 ID=EsuBft943_7|Name=EsuBft943_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=502bp
MSDSEDAAGKAAAAERAAATEKAVEEISKTLALTMDKIAALESAGKAAGG
QAGWAAGGEREGKKPHVWYGGHQQQVTRGVQQQSSRHNHVLTRHSRYQHQ
QQLVPNERPRPPAAPPPEQQHQCSCCGEKGHVHQDCKFNLARGLFQQRRN
GGFGGGSVFQQQQQQQQQQKPGVVYGSTGGFQQQPRQQQLAAGSTRGVVG
QVSGGVFIGEKGGGAAAGSFVASLLVKAPANISSPNAVRHPAAHSPPRPT
TSRVAPAVARKRAELDLMEAGYSISVAXATTAGGWLHPRCGWTANHADEI
LPAAPSSTIGICGTASAPAVATAASARAAAAGVTPHGATTAVAATETAAV
GTAVAAASPVAALAPGSQDTRADSGGLTCSSGGDNGIYGFERGASYPFDP
GGLFAQEVREEGDHNSGGKEDWSSGGRSSSSGDGGDGAAWHGASTHPFDR
GKRSRGGERPRGPCWEWTSRSIEVEMHGHVPGGDASHQAAPAGAAPTATA
AV

mRNA from alignment at Scaffold_420:522765..526252-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft943_7a-0001 ID=EsuBft943_7a-0001|Name=EsuBft943_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3488bp|location=Sequence derived from alignment at Scaffold_420:522765..526252- (Ectocarpus subulatus male Bft15b)
ATGTCGGATTCTGAGGATGCTGCAGGAAAGGCAGCAGCTGCGGAGAGGGC
AGCAGCCACGGAGAAGGCGGTAGAGGAAATAAGTAAGACGCTTGCACTAA
CGATGGATAAGATAGCTGCATTAGAGAGTGCTGGGAAGGCAGCAGGTGGT
CAAGCTGGGTGGGCAGCTGGAGGAGGTGTACATGCCGGGGGTGGGGCCGG
TGGATCAGGGAGATTATTTTTGACACGGACGGAAGGGTCGCGATCCAAAT
CATTTTTTTTCAGAGAGAGAGGGGAAGAAGCCCCATGTGTGGTACGGTGG
ACACCAGCAGCAGGTGACGAGAGGAGTGCAGCAGCAGAGCAGCCGCCACA
ACCATGTCCTTACAAGGCACAGCCGGTACCAGCATCAGCAGCAGCTGGTG
CCCAACGAACGCCCACGCCCTCCCGCTGCTCCCCCTCCCGAGCAGCAGCA
CCAATGCAGCTGCTGTGGAGAGAAAGGTCATGTACATCAGGACTGCAAAT
TCAACCTCGCCCGCGGACTGTTTCAGCAGCGGAGGAACGGTGGCTTTGGC
GGCGGGTCTGTGTTCCAGCAGCAGCAGCAGCAGCAACAGCAGCAGAAGCC
AGGCGTGGTGTATGGCAGCACTGGTGGATTTCAGCAGCAGCCGCGGCAAC
AACAGCTGGCGGCTGGCTCCACCCGCGGTGTGGTTGGACAGGTGAGTGGT
GGGGTGTTTATTGGCGAGAAGGGGGGGGGGGCTGCTGCCGGTTCGTTTGT
GGCGTCTTTGCTGGTGAAAGCCCCCGCCAACATATCTTCTCCCAACGCAG
TTAGGCACCCCGCCGCTCATTCTCCCCCGCGACCCACGACATCACGTGTA
GCACCTGCAGTAGCGCGGAAACGCGCAGAACTGGATCTCATGGAGGCCGG
GTACAGTATAAGTGTAGCAANGGCAACAACAGCTGGCGGCTGGCTCCACC
CGCGGTGTGGTTGGACAGGTGAGTGGTGGGGTGTTTATTGGCGAGAAGGG
GGGGGGGGCTGCTGCCGGTTCGTTTGTGGCGTCTTTGCTGGTGAAAGCCC
CCGCCAACATATCTTCTCCCAACGCAGTTAGGCACCCCGCCGCTCATTCT
CCCCCGCGACCCACGACATCACGTGTAGCACCTGCAGTAGCGCGGAAACG
CGCAGAACTGGATCTCATGGAGGCCGGGTACAGTATAAGTGTAGCAATGC
GGCAGATTCCCGGACCATACCGCGTTCTTGTAATTTCGCCATCCGCGGCA
TCGCAACAACCCAAGCAGTCACCGTCTCAGCAGCAGCAGCAGCAGCAGCA
GCAGCCAGCAGCCTCACTTGTGCTATCACCCACAGCAAACCATGCCGATG
AGATCCTTCCTGCTGCCCCATCTTCAACGATTGGGATTTGTGGAACGGCA
TCCGCACCGGCGGTCGCAACGGCGGCTTCGGCCAGAGCTGCGGCGGCAGG
AGTAACGCCGCATGGAGCGACAACGGCAGTGGCTGCGACGGAAACGGCGG
CGGTGGGGACAGCAGTAGCAGCGGCGTCCCCGGTTGCCGCGTTGGCGCCG
GGCAGTCAAGATACGCGCGCCGACAGCGGCGGCCTGACCTGCAGCAGCGG
TGGAGACAACGGCATCTACGGTTTCGAGAGGGGCGCGTCGTACCCTTTTG
ACCCGGGAGGGTTATTTGCGCAGGAGGTGCGTGAGGAGGGAGATCACAAC
AGCGGTGGTAAGGAGGACTGGAGCAGCGGTGGCCGCAGTAGCAGCAGCGG
CGACGGCGGAGATGGCGCGGCCTGGCATGGAGCGTCAACACATCCCTTTG
ACAGAGGGAAGCGGTCCCGTGGAGGAGAGCGACCAAGGGGTCCGTGCTGG
GAGTGGACCTCCCGTTCGATCGAGGTAGAGATGCATGGGCACGTGCCGGG
GGGTGATGCTTCGCACCAAGCGGCACCAGCGGGAGCGGCGCCAACGGCAA
CGGCAGCAGTTTGAGCGGGGATGAGAGGGCGCGCGAGCGGGGGGAGAGTT
TACCCTTGTCTGTTTCCCCCCCGCCCACCCCTCCCGTGCCTCCCACAGCG
CCACACCTGCAGCGAGCCCCGGCGACGTACGCGCAAGCTCATGCGGGGCG
GGCACAGCGCCATTTGGGGAGCAGCCGAGAAGCGGGAGATGGATGGTCTG
GTTGGGGCGGGCACGTTCGAGCCGGCAGGAGGGCTCTAGCAACGAGGAAC
GAACGTCATCTCTGCCAAATGGGTCTACACGTGGAAACCTGATGAATTCG
GTGATGTGTTGCGTGCAAAGGCTCGGCTTGTCGCTAGGGGTTTCGGTCAG
CGTGAAGGTATTGACTATTTCGAGACTTTCCCCGTGCCCTACCCATCCGA
GTATTCGCCTCTTGTCTGCTATCGCGCGTGAAATGGGTTGGGACATGTCC
CACTTTGATGCTGATCAAGCGTTTGTGCAATCGAAGCTAAATGAGATCGT
GTACGTGCGTCTGCCGCAGGGTTGTGGGCCCCTTTCGGGTAAGATTGTGA
GACTTGCCCGTAGTCTTGAAGCAGGCGTCACGCACGTGGCGCCACCACCT
TGTTCGGGGCATGAAATCTCTTTGGGTTTGACCAATGTGCTGCTGATGCG
TGTGTTATGCGTTTGATCGAGGATGGTGTGCTTCCCATGGTAGTTGTGGT
GCATGTGGATGACATTTTTTCCATCGGGCGAAATAGTGGGTGTGACAGGT
TTGGCCGAGACTTGAACGCCTACGTTCCCATCACCAACCTCGGAGCGTTG
CGCTTGTGTGCGGGAGTTCGTTTTTCACGCGATTGGGATGCTGGTACGCT
TACATTGTCGCAAGAAACTTTTGCTGTCAACTTGGTTGCGAAGTTTGGTG
TCACGCGCAACAAGGAGACCCCGATGCCTGTTGGAGTGAAGCTTGACGAT
TTTTCTGCTGACGAACTTGATGGTCTTGAGCATTTTCGTTTTTTGGTAGG
TCACCTCACGTGGCTTGCTAACCAGACTCGGCCGGATATCCTTAATGCCG
TGCGGTCCGTTGCGAGATATTCCCATGCACCGTATATCATACACTGGCGG
GCTGCGTTGCATATTGCGATGTACGTTAAATTCACGAGTACTTTTGGTAT
TACATTTCAGCGGGGTTCACGGGAGGGTATCGATTTGCGCTTGTATGTTG
ACTCCGACTATGCCAGCCGGGCCACTGACCGGCGGACGGTCTCGGGAGCA
GTTGTGATGTGCGGCGGTGCATGTGTTTCGTTTTTATGAAGGACGCAGAA
AAGTGTGACCCTGTCGTCGACGGAAGCAGAGTATGTTGCGATGGCTGACG
GTGTGAAGGAGACGATTTTCTTGTGGTATATTTGGGGTTTTATTGTTTCG
GGTCGCGATGTTGGGTGCACACTGGTGTTCGAGGATAACGAGAGCGCTCT
TCACCTTGCGGTCAACCCCGCCACCACACCGAACTCTGAGCACATCGACA
TTCGTCACCACTTTCTTCGGGAGCGTGTAGCACGGGGA

Coding sequence (CDS) from alignment at Scaffold_420:522765..526252-

>EsuBft943_7a-0001 ID=EsuBft943_7a-0001|Name=EsuBft943_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1509bp|location=Sequence derived from alignment at Scaffold_420:522765..526252- (Ectocarpus subulatus male Bft15b)
ATGTCGGATTCTGAGGATGCTGCAGGAAAGGCAGCAGCTGCGGAGAGGGC
AGCAGCCACGGAGAAGGCGGTAGAGGAAATAAGTAAGACGCTTGCACTAA
CGATGGATAAGATAGCTGCATTAGAGAGTGCTGGGAAGGCAGCAGGTGGT
CAAGCTGGGTGGGCAGCTGGAGGAGAGAGAGAGGGGAAGAAGCCCCATGT
GTGGTACGGTGGACACCAGCAGCAGGTGACGAGAGGAGTGCAGCAGCAGA
GCAGCCGCCACAACCATGTCCTTACAAGGCACAGCCGGTACCAGCATCAG
CAGCAGCTGGTGCCCAACGAACGCCCACGCCCTCCCGCTGCTCCCCCTCC
CGAGCAGCAGCACCAATGCAGCTGCTGTGGAGAGAAAGGTCATGTACATC
AGGACTGCAAATTCAACCTCGCCCGCGGACTGTTTCAGCAGCGGAGGAAC
GGTGGCTTTGGCGGCGGGTCTGTGTTCCAGCAGCAGCAGCAGCAGCAACA
GCAGCAGAAGCCAGGCGTGGTGTATGGCAGCACTGGTGGATTTCAGCAGC
AGCCGCGGCAACAACAGCTGGCGGCTGGCTCCACCCGCGGTGTGGTTGGA
CAGGTGAGTGGTGGGGTGTTTATTGGCGAGAAGGGGGGGGGGGCTGCTGC
CGGTTCGTTTGTGGCGTCTTTGCTGGTGAAAGCCCCCGCCAACATATCTT
CTCCCAACGCAGTTAGGCACCCCGCCGCTCATTCTCCCCCGCGACCCACG
ACATCACGTGTAGCACCTGCAGTAGCGCGGAAACGCGCAGAACTGGATCT
CATGGAGGCCGGGTACAGTATAAGTGTAGCAANGGCAACAACAGCTGGCG
GCTGGCTCCACCCGCGGTGTGGTTGGACAGCAAACCATGCCGATGAGATC
CTTCCTGCTGCCCCATCTTCAACGATTGGGATTTGTGGAACGGCATCCGC
ACCGGCGGTCGCAACGGCGGCTTCGGCCAGAGCTGCGGCGGCAGGAGTAA
CGCCGCATGGAGCGACAACGGCAGTGGCTGCGACGGAAACGGCGGCGGTG
GGGACAGCAGTAGCAGCGGCGTCCCCGGTTGCCGCGTTGGCGCCGGGCAG
TCAAGATACGCGCGCCGACAGCGGCGGCCTGACCTGCAGCAGCGGTGGAG
ACAACGGCATCTACGGTTTCGAGAGGGGCGCGTCGTACCCTTTTGACCCG
GGAGGGTTATTTGCGCAGGAGGTGCGTGAGGAGGGAGATCACAACAGCGG
TGGTAAGGAGGACTGGAGCAGCGGTGGCCGCAGTAGCAGCAGCGGCGACG
GCGGAGATGGCGCGGCCTGGCATGGAGCGTCAACACATCCCTTTGACAGA
GGGAAGCGGTCCCGTGGAGGAGAGCGACCAAGGGGTCCGTGCTGGGAGTG
GACCTCCCGTTCGATCGAGGTAGAGATGCATGGGCACGTGCCGGGGGGTG
ATGCTTCGCACCAAGCGGCACCAGCGGGAGCGGCGCCAACGGCAACGGCA
GCAGTTTGA