EsuBft943_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft943_6a-0001
Unique NameEsuBft943_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:528744..529461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G7W9
ProteomeIdEsuBft943_6
Protein domainsIPR029063
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length54
Hectar predicted targeting categoryother localisation
Evalue9.55e-48
EggNOG OGs2E18F@1|root,2S8KF@2759|Eukaryota
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-06_000010.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionMethyltransferase domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft943_6aEsuBft943_6aEctocarpus subulatus male Bft15bgeneScaffold_420 528744..529461 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_6a-0001-exonEsuBft943_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 528744..528755 +
EsuBft943_6a-0001-exonagat-exon-28892Ectocarpus subulatus male Bft15bexonScaffold_420 528925..529461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_6a-0001-cdsEsuBft943_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 528744..528755 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_6a-0001-exonagat-three_prime_utr-23333Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_420 529315..529461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_6a-0001EsuBft943_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 528744..529314 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft943_6a-0001 ID=EsuBft943_6a-0001|Name=EsuBft943_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=549bp|location=Sequence derived from alignment at Scaffold_420:528744..529461+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGTCGGTTTGGGGCGGAGAGCACCTCCACGTCGGCCTTCACTC
CAAGCTCGAGGGGGAACACGCCAAGCTGGAGGGGTTGGAGCGCATCAGAA
AGGCCAGCTCCCTGAGCACCGACGAGCTCCTCTCACGGTGCTTCCCCTCC
GGCACGAATGGCAATGGCGCTCCCCCCTCGGCGGAGTGTACCATGGTGGA
CCTTGGGTGCGGGTACGGGGGCACTGCGAGGGTGGCTACCAAGAAGCTTG
GCTGCAAGGTGGGTCGCTACAATGCTGCTTGCTGTGATGTTTACCAAATG
CCCAGGGTAGAAGATCAAAGGAGGGGGCGCGGAGGAAACGGGATGTTGCT
CACTTGTCTTATAGCGGGGCAAGGCTTGGGAGCATGTGTCATGTCTGATT
GATGTCTGGTGTCGCGCCATCCCCTCGCATGGTGGTTTCGTTCTTCCTAT
CTCGTTTGTTCTTGCCACCAGGTGGTGTGCATCAACGTTTCGAAGCGTGA
GAACGAGACGAACGTCGCCATGACCAAAGAGGCCGGCCTCCAAGACAGG
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protein sequence of EsuBft943_6a-0001

>EsuBft943_6 ID=EsuBft943_6|Name=EsuBft943_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=133bp
MPPSVWGGEHLHVGLHSKLEGEHAKLEGLERIRKASSLSTDELLSRCFPS
GTNGNGAPPSAECTMVDLGCGYGGTARVATKKLGCKVGRYNAACCDVYQM
PRVEDQRRGRGGNGMLLTCLIAGQGLGACVMSD
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mRNA from alignment at Scaffold_420:528744..529461+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft943_6a-0001 ID=EsuBft943_6a-0001|Name=EsuBft943_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=718bp|location=Sequence derived from alignment at Scaffold_420:528744..529461+ (Ectocarpus subulatus male Bft15b)
ATGCCGCCGTCGGTAATACAACTGGGACGTTCCTTCCCATGACTTTCCTT
CTTTGTCAAAACCTCCCCCCCTTGTATGCATAGACTGCCGTAACTGTAGT
AGTCTTCAACATCGAATCGAAAAATATTCCATGTGAACAAAATCAATATC
AAAATGCACATGTTTTTGTTCATGTTTACAGGTTTGGGGCGGAGAGCACC
TCCACGTCGGCCTTCACTCCAAGCTCGAGGGGGAACACGCCAAGCTGGAG
GGGTTGGAGCGCATCAGAAAGGCCAGCTCCCTGAGCACCGACGAGCTCCT
CTCACGGTGCTTCCCCTCCGGCACGAATGGCAATGGCGCTCCCCCCTCGG
CGGAGTGTACCATGGTGGACCTTGGGTGCGGGTACGGGGGCACTGCGAGG
GTGGCTACCAAGAAGCTTGGCTGCAAGGTGGGTCGCTACAATGCTGCTTG
CTGTGATGTTTACCAAATGCCCAGGGTAGAAGATCAAAGGAGGGGGCGCG
GAGGAAACGGGATGTTGCTCACTTGTCTTATAGCGGGGCAAGGCTTGGGA
GCATGTGTCATGTCTGATTGATGTCTGGTGTCGCGCCATCCCCTCGCATG
GTGGTTTCGTTCTTCCTATCTCGTTTGTTCTTGCCACCAGGTGGTGTGCA
TCAACGTTTCGAAGCGTGAGAACGAGACGAACGTCGCCATGACCAAAGAG
GCCGGCCTCCAAGACAGG
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Coding sequence (CDS) from alignment at Scaffold_420:528744..529461+

>EsuBft943_6a-0001 ID=EsuBft943_6a-0001|Name=EsuBft943_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=402bp|location=Sequence derived from alignment at Scaffold_420:528744..529461+ (Ectocarpus subulatus male Bft15b)
ATGCCGCCGTCGGTTTGGGGCGGAGAGCACCTCCACGTCGGCCTTCACTC
CAAGCTCGAGGGGGAACACGCCAAGCTGGAGGGGTTGGAGCGCATCAGAA
AGGCCAGCTCCCTGAGCACCGACGAGCTCCTCTCACGGTGCTTCCCCTCC
GGCACGAATGGCAATGGCGCTCCCCCCTCGGCGGAGTGTACCATGGTGGA
CCTTGGGTGCGGGTACGGGGGCACTGCGAGGGTGGCTACCAAGAAGCTTG
GCTGCAAGGTGGGTCGCTACAATGCTGCTTGCTGTGATGTTTACCAAATG
CCCAGGGTAGAAGATCAAAGGAGGGGGCGCGGAGGAAACGGGATGTTGCT
CACTTGTCTTATAGCGGGGCAAGGCTTGGGAGCATGTGTCATGTCTGATT
GA
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