EsuBft943_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft943_4a-0001
Unique NameEsuBft943_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:539452..542167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog7668.SPU_005630-tr
ProteomeIdEsuBft943_4
Protein domainsIPR027124
Protein domainsCoil
Protein domainsPTHR23227
Protein domainsIPR005135
Ownerapollo_admin@sb-roscoff.fr
Notecraniofacial development protein 2 os:bos taurus gn:cfdp2 pe:1 sv:2 [Automatic annotation]
Nb exon3
Max annot lvl33208|Metazoa
Length2587
Hectar predicted targeting categoryother localisation
Evalue6.41e-16
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3CYKV@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00004,RC00039,RC00041,RC00063
KEGG koko:K13506,ko:K15407
KEGG ReactionR00851,R03789,R09380,R10209
KEGG Pathwayko00561,ko00564,ko01100,ko01110,map00561,map00564,map01100,map01110
KEGG ModuleM00089
EC2.3.1.15,2.4.2.29
Descriptionprotein phosphatase regulator activity
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft943_4aEsuBft943_4aEctocarpus subulatus male Bft15bgeneScaffold_420 539452..542167 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_4a-0001-exonagat-exon-28891Ectocarpus subulatus male Bft15bexonScaffold_420 539452..540875 -
EsuBft943_4a-0001-exonEsuBft943_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 540934..541693 -
EsuBft943_4a-0001-exonagat-exon-28890Ectocarpus subulatus male Bft15bexonScaffold_420 541765..542167 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_4a-0001-exonagat-three_prime_utr-23331Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_420 539452..540193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_4a-0001-cdsEsuBft943_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 540194..540875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft943_4a-0001EsuBft943_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 540194..542167 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft943_4a-0001 ID=EsuBft943_4a-0001|Name=EsuBft943_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2587bp|location=Sequence derived from alignment at Scaffold_420:539452..542167- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCGCTCGCGGGAGAAGGGAGACAACCGCGGGCACCGCGGGGAGGG
AGTGCTGCACCCTCCTCGTCAAAACACCACAGGCAAGAACAGAGCTCTGC
AGAGATGGATTGATGCGAGGAAATTCGCCGCTCGGAAAATAAGGAAGAAA
GCACACCCGCAACGCGAGGCGGACCGAGAGAGACACGAGACCGCAGCGGC
CGTCAAGGCGGCTGCGAAGAAGAAGGCACGAGAGGGCGACCTATCGTTCG
GCACGTTCAACGTACGCACGCTCGCCTACAGCGGTAGGAACCCCATCGGT
CACAACGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGT
GATAGGACTTCGAGGACCCGACGAGAGGGGCAAGGTTCAATTGCACACGA
CGGCGATCAAGGAGGCCATGTGGGAGAGTGTGGGCGAGGAAGGTAGGACG
GTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGCGTCTACAAATTGGCCG
CACCTGCGGAGTAACTTTCGTGGTGGGGTACGCCCCCACGGAAACTGTCC
GCACCACCGCGGGCGGTGATGTTAACGCCAAGGACTCCTTCTGGACTGCT
CTCGACGCAGTGATCCGGGAGGTTCACAGCCGTGACCATCTCGTGGTGCT
AATGGACGCCAACGCACGCACTGGTAGGAGGCGAGACGGGTGCTGCGATG
CCAAGATTATGGGCGCGTACGGACGCGACCTTATGAACAACAACGGGGAA
CGACTCCTTGGACTGGCATCAGACAACCAACTCTCCCTGACCAACACCTA
CTTCCGTACGCCGAAATGTGGAGTGCAGCACACATTCCAGAGCTCCAACA
AGGGGAAGGAGAAGTACCGCCTCGACTTCATCCTCATGCGTCAGACGGAC
CGGCGTTTCGTGCGTAATGTCTCCGTCAAACGTGTCGACTTCAAAGACTC
TGACCACAACCTCGTGCCTACGACTGTCCGCCTCCCCCCCCGTGTCGCAC
CCAACCGACGAGTGCGGGGGAACAGCGGAAGCAGCCGGATCCGTATCGAC
CTCGAGCGGTTGAGGAAGGACAAACACCTACGGGACGCCTTCCAAAACAG
GGCCTCCGGCCGCCCTCCGCCCACGGCGCTCAANGCGGGGGAACAGCGGA
AGCAGCCGGATCCGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGG
CCAACGGGAGAGACCGTCGCCGAGCTGACGGCTACGGTGATGTCGGCCGC
TGCTGAGACCGTGCCGCTGGCGAGGTGCGCACGAGGGCAGAGAGGCTGGT
ACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTCTAAGGAGATTAAG
GCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACAGCGCCTTCGAGGC
GACCCTGAAGGCTATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGA
GGTGGAGGGCACTAGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCGAG
AAGAAGAGCCGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGAT
GATCGACGTCGAAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAGGACG
AGGACGGCAAGATCCTTCGGGACCCCACGTTTACTCGCCAACGGTGGGCA
CGTTGGTTCCGCAAGCTTCTCAACACCAATTCGCCGACCATCGACCTGCA
TGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGAGACGAAAAGGAAGGGGGGAAA
TGGAAAGAGAGCGCCAAGGACCCGGAGGTGTGGTACAACAAGGTCGAGGA
CGGGGCGGCATGGTTCATGAGGAAATGACACAGGCAG
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protein sequence of EsuBft943_4a-0001

>EsuBft943_4 ID=EsuBft943_4|Name=EsuBft943_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=615bp
MHRSREKGDNRGHRGEGVLHPPRQNTTGKNRALQRWIDARKFAARKIRKK
AHPQREADRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYSGRNPIG
HNVMTVMQICSATGCDVIGLRGPDERGKVQLHTTAIKEAMWESVGEEGRT
VECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTA
LDAVIREVHSRDHLVVLMDANARTGRRRDGCCDAKIMGAYGRDLMNNNGE
RLLGLASDNQLSLTNTYFRTPKCGVQHTFQSSNKGKEKYRLDFILMRQTD
RRFVRNVSVKRVDFKDSDHNLVPTTVRLPPRVAPNRRVRGNSGSSRIRID
LERLRKDKHLRDAFQNRASGRPPPTALXAGEQRKQPDPASSRPPPTALRR
PTGETVAELTATVMSAAAETVPLARCARGQRGWYTSEAQHEISEASKEIK
AAQQQLRGASKNSAFEATLKAMLKAARKKRSIARWRALETFFEGYVRQLE
KKSREGDQAGFYRHLKMIDVEGKRSFTSQNIKDEDGKILRDPTFTRQRWA
RWFRKLLNTNSPTIDLHAADKVKRWPTCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXX
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mRNA from alignment at Scaffold_420:539452..542167-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft943_4a-0001 ID=EsuBft943_4a-0001|Name=EsuBft943_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2716bp|location=Sequence derived from alignment at Scaffold_420:539452..542167- (Ectocarpus subulatus male Bft15b)
ATGCACCGCTCGCGGGAGAAGGGAGACAACCGCGGGCACCGCGGGGAGGG
AGTGCTGCACCCTCCTCGTCAAAACACCACAGGCAAGAACAGAGCTCTGC
AGAGATGGATTGATGCGAGGAAATTCGCCGCTCGGAAAATAAGGAAGAAA
GCACACCCGCAACGCGAGGCGGACCGAGAGAGACACGAGACCGCAGCGGC
CGTCAAGGCGGCTGCGAAGAAGAAGGCACGAGAGGGCGACCTATCGTTCG
GCACGTTCAACGTACGCACGCTCGCCTACAGCGGTAGGAACCCCATCGGT
CACAACGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGT
GATAGGACTTCGAGGACCCGACGAGAGGGGCAAGGTTCAATTGCACACGA
CGGGTACGTCATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGA
GGGGCGTACACGGTGTGGGCATAGCGATCAAGGAGGCCATGTGGGAGAGT
GTGGGCGAGGAAGGTAGGACGGTGGAGTGCATTAGCCCGAGGCTGATGAA
GGTGCGTCTACAAATTGGCCGCACCTGCGGAGTAACTTTCGTGGTGGGGT
ACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATGTTAACGCC
AAGGACTCCTTCTGGACTGCTCTCGACGCAGTGATCCGGGAGGTTCACAG
CCGTGACCATCTCGTGGTGCTAATGGACGCCAACGCACGCACTGGTAGGA
GGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGCGTACGGACGCGAC
CTTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAGACAACCA
ACTCTCCCTGACCAACACCTACTTCCGTACGCCGAAATGTGGAGTGCAGC
ACACATTCCAGAGCTCCAACAAGGGGAAGGAGAAGTACCGCCTCGACTTC
ATCCTCATGCGTCAGACGGACCGGCGTTTCGTGCGTAATGTCTCCGTCAA
ACGTGTCGACTTCAAAGACTCTGACCACAACCTCGTGCCTACGACTGTCC
GCCTCCCCCCCCGTGTCGCACCCAACCGACGAGTGCGGGGGAACAGCGGA
AGCAGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAGGACAAACACCT
ACGGGACGCCTTCCAAAACAGGGCCTCCGGCCGCCCTCCGCCCACGGCGC
TCAANGCGGGGGAACAGCGGAAGCAGCCGGATCCGTATCGACCTCGAGCG
GTCAAGGAAGGAAAAACACCTACGGGACGCTTTCCAAAACAGGGCCTCCA
GCCGCCCTCCGCCCACGGCGCTCAGGCGGCCAACGGGAGAGACCGTCGCC
GAGCTGACGGCTACGGTGATGTCGGCCGCTGCTGAGACCGTGCCGCTGGC
GAGGTGCGCACGAGGGCAGAGAGGCTGGTACACGAGCGAAGCGCAGCACG
AGATCTCCGAAGCGTCTAAGGAGATTAAGGCGGCCCAGCAGCAACTGCGT
GGGGCCTCAAAGAACAGCGCCTTCGAGGCGACCCTGAAGGCTATGCTCAA
GGCGGCGCGGAAGAAGCGCAGCATCGCGAGGTGGAGGGCACTAGAAACGT
TCTTCGAGGGCTATGTACGGCAGCTCGAGAAGAAGAGCCGCGAGGGGGAT
CAGGCGGGTTTCTACAGGCACCTGAAGATGATCGACGTCGAAGGTAAGAG
GTCGTTCACCTCTCAGAACATCAAGGACGAGGACGGCAAGATCCTTCGGG
ACCCCACGTTTACTCGCCAACGGTGGGCACGTTGGTTCCGCAAGCTTCTC
AACACCAATTCGCCGACCATCGACCTGCATGCGGCTGACAAGGTCAAGCG
GTGGCCCACGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGAGACGAAAAGGAAGGGGGGAAATGGAAAGAGAGCGCCAAGGAC
CCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATGAG
GAAATGACACAGGCAG
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Coding sequence (CDS) from alignment at Scaffold_420:539452..542167-

>EsuBft943_4a-0001 ID=EsuBft943_4a-0001|Name=EsuBft943_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1845bp|location=Sequence derived from alignment at Scaffold_420:539452..542167- (Ectocarpus subulatus male Bft15b)
ATGCACCGCTCGCGGGAGAAGGGAGACAACCGCGGGCACCGCGGGGAGGG
AGTGCTGCACCCTCCTCGTCAAAACACCACAGGCAAGAACAGAGCTCTGC
AGAGATGGATTGATGCGAGGAAATTCGCCGCTCGGAAAATAAGGAAGAAA
GCACACCCGCAACGCGAGGCGGACCGAGAGAGACACGAGACCGCAGCGGC
CGTCAAGGCGGCTGCGAAGAAGAAGGCACGAGAGGGCGACCTATCGTTCG
GCACGTTCAACGTACGCACGCTCGCCTACAGCGGTAGGAACCCCATCGGT
CACAACGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGT
GATAGGACTTCGAGGACCCGACGAGAGGGGCAAGGTTCAATTGCACACGA
CGGCGATCAAGGAGGCCATGTGGGAGAGTGTGGGCGAGGAAGGTAGGACG
GTGGAGTGCATTAGCCCGAGGCTGATGAAGGTGCGTCTACAAATTGGCCG
CACCTGCGGAGTAACTTTCGTGGTGGGGTACGCCCCCACGGAAACTGTCC
GCACCACCGCGGGCGGTGATGTTAACGCCAAGGACTCCTTCTGGACTGCT
CTCGACGCAGTGATCCGGGAGGTTCACAGCCGTGACCATCTCGTGGTGCT
AATGGACGCCAACGCACGCACTGGTAGGAGGCGAGACGGGTGCTGCGATG
CCAAGATTATGGGCGCGTACGGACGCGACCTTATGAACAACAACGGGGAA
CGACTCCTTGGACTGGCATCAGACAACCAACTCTCCCTGACCAACACCTA
CTTCCGTACGCCGAAATGTGGAGTGCAGCACACATTCCAGAGCTCCAACA
AGGGGAAGGAGAAGTACCGCCTCGACTTCATCCTCATGCGTCAGACGGAC
CGGCGTTTCGTGCGTAATGTCTCCGTCAAACGTGTCGACTTCAAAGACTC
TGACCACAACCTCGTGCCTACGACTGTCCGCCTCCCCCCCCGTGTCGCAC
CCAACCGACGAGTGCGGGGGAACAGCGGAAGCAGCCGGATCCGTATCGAC
CTCGAGCGGTTGAGGAAGGACAAACACCTACGGGACGCCTTCCAAAACAG
GGCCTCCGGCCGCCCTCCGCCCACGGCGCTCAANGCGGGGGAACAGCGGA
AGCAGCCGGATCCGGCCTCCAGCCGCCCTCCGCCCACGGCGCTCAGGCGG
CCAACGGGAGAGACCGTCGCCGAGCTGACGGCTACGGTGATGTCGGCCGC
TGCTGAGACCGTGCCGCTGGCGAGGTGCGCACGAGGGCAGAGAGGCTGGT
ACACGAGCGAAGCGCAGCACGAGATCTCCGAAGCGTCTAAGGAGATTAAG
GCGGCCCAGCAGCAACTGCGTGGGGCCTCAAAGAACAGCGCCTTCGAGGC
GACCCTGAAGGCTATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGCGA
GGTGGAGGGCACTAGAAACGTTCTTCGAGGGCTATGTACGGCAGCTCGAG
AAGAAGAGCCGCGAGGGGGATCAGGCGGGTTTCTACAGGCACCTGAAGAT
GATCGACGTCGAAGGTAAGAGGTCGTTCACCTCTCAGAACATCAAGGACG
AGGACGGCAAGATCCTTCGGGACCCCACGTTTACTCGCCAACGGTGGGCA
CGTTGGTTCCGCAAGCTTCTCAACACCAATTCGCCGACCATCGACCTGCA
TGCGGCTGACAAGGTCAAGCGGTGGCCCACGTGCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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