EsuBft942_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft942_9a-0001
Unique NameEsuBft942_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_467contigScaffold_467:107406..110396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft942_9
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsCoil
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSignalP-noTM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length236
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft942_9aEsuBft942_9aEctocarpus subulatus male Bft15bgeneScaffold_467 107406..110396 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_9a-0001-exonagat-exon-44849Ectocarpus subulatus male Bft15bexonScaffold_467 107406..109374 -
EsuBft942_9a-0001-exonEsuBft942_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_467 109956..110041 -
EsuBft942_9a-0001-exonagat-exon-44850Ectocarpus subulatus male Bft15bexonScaffold_467 110088..110396 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_9a-0001-exonagat-three_prime_utr-23326Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_467 107406..108110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_9a-0001-cdsEsuBft942_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_467 108111..109374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_9a-0001EsuBft942_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_467 108111..110396 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft942_9a-0001 ID=EsuBft942_9a-0001|Name=EsuBft942_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2364bp|location=Sequence derived from alignment at Scaffold_467:107406..110396- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCGCTGTGCGTCGCCTTTGGCTTCTTCTGGCTGTTGCTCACCCT
CTGCCGGCGTTGGTGGCTGGCCATCGCCACCGGCATCGCGTCGTCGAAGA
AGCAGATGGAGAGCCAACTTGAGGAGGAGAGGGCGAAGTGGCAGAGGGAG
GCAGAGATTGCCACCGCCGCTGCCGTCGCCGCGTGTCAGGCGAAGATGCA
GCTGTTTTTCCAGAGCCAGCTCCAGGAGGAGAGGCGGAAGGCCAAGCTGT
CGATGAAGAAGGCCGTCGAGGCCTCCAAAAAGGAGGCGCTGCTCGCCTTT
GGGCAGATGTTCGGGTTCTGGGGCCTCATGGTCTTGGTCCAGAAGGCAGG
GTGGCGTTCGTGGAACTACAGCGTGCCTGCTGCCATGCCTTTCAGGCTCA
CCGATCATGTCCCTTCCTTGGCGAATGTCACAGAGCTCCTCTTCTTCGCC
CATCAGAGAGCGTCCAGTTTCCCGATGGCCAGCTGGCCTAGATTCTGTTC
GATGACGGCGCTGTGCGTCGCCTTTGGCTTCTTCTGGCTGTTGCTCACCC
TCTGCCGGCGTTGGTGGCTGGCCATCGCCACCGGCATCGCGTCGTCGAAG
AAGCAGATGGAGAGCCAACTTGAGGAGGAGAGGGCGAAGTGGCAGAGGGA
GGCAGAGATTGCCACCGCCGCTGCCGTCGCCGCGTGTCAGGCGAAGATGC
AGCTGTTTTTCCAGAGCCAGCTCCAGGAGGAGAGGCGGAAGGCCAAGCTG
TCGATGAAGAAGGCCGTCGAGGCCTCCAAAAAGGAGGCGCTGCTCGCCTT
TGGGCAGATGGTCCGGGAGAACCGTGAGGCCAAGGACGGCAAGTGGCAGA
AGAAGCTCGACGGCGTCGAGGCTAGGCTTCTGGGTCGCGTGAAGGACGAG
CTTGGTGACACGCCTGCCACCATCGCCTCCGTCCGCGCAGACGTCCTTCA
GCTGACAAAGCAAGCTGCCGACATGCCTGCTGCCATGGAGAAGGCGGTGA
TGGACGAGATATTCCGCTCCGGCACCGAGCAGCTGGAGATGGGGCAGGCC
AAGCTTCGTGAGGAGATGGCCAGATTCCAGCAGGAGACCGAGGAGGCTAT
GGGGAACCTCACGGCCAAGCTGAACAACGTCAAGGAGAACACCGACGCCC
TCGGATCTGGCCTCCTGACGGTTCAGAACATCGTCATGAAAACTAATGGG
CGCAGGATCAAGAAGGTCCTGTACAGGATGGAGGAGAGAGCGGAGGAGTC
CAGCAGAGTGTGGGGCGAGGGACCCAAGCTAGGCCCACACTTCGCCCATT
GGAAGGCCACCAAGAAGCAACTCAAGGAAGACGGGGGGGGCGACGACGAC
GAGGGCGAGGAGCAGGCGGGCGGGAACCTCCCGGGGCCGCCCCACGAGGA
GGGGGAGCAGAAGGAGGAGCAGATTGAGGAGGAGGCCGACAAACTCTCAG
GGCCGCCACATGAGGAGGGGGAGCAGAAGGAGGGGGAGGGGGAGGACCAG
CGCTCACGGCCGAACGGGAAGACCAGGAGAGGAAAACGCGGGCGCAAGTC
AAAGAAGGCGGTAGGAGATGGAGAGGGAGATGACAGCAGTGCCGCCAACG
GATCGAACGCCATGTCCGGGGGAGGGGAGGGGGGACAGGACTTCTCCGCC
GGTACCTAGAGCAGCAGCAGGGTTGATTTTGTTTGTTATCTTGGCAGTAA
ACTTGCTCTCGAAGGCGTTGAGCGGGGTGTCGGTTCATCCGACCCTTTGC
CCCGCCTCAGGTGCAGTTTACTGTCAAGCCGTGGAATCAGAACAGTTTTA
CAGCTATGGCTTTGGTCCATCAGTGGGTTTGCTTTCGACGGATGTGGCAC
GGACTACTATGTACTTCGTATTTGGAGGTCCTTGTTGCCTATCCCCGATG
GTGCATTTCCATAAACGGCAAAAACTCGAGCCCATGTACAACTAGATTGT
TTCCACGATCAACGACTTTTTTTCCTGTTAGCCCGGTTTGCGTGCTACTT
ATTTCGGGAAAATCGGGCACATGCGGTTTTTTTTGCATCCCTCGCTTCTC
GCTGAAGGGGGCTGCGGCGAGAGGAGCATTGTGGCTCCAGCTTGCGTCTG
TTCTTGATTCGATCTCAAGGATTGTGGGGGGGCGTGTCTGCGGGCTCTTT
CTGCCTGCCCGGTTGGTGCTGCGTTTCGTGCCGAAGCGCAGGGGTCACGT
GGTGTTGGATTCCTGTTAACTTGTGCCCATTGGTTGTAGAAGAAGTAAAC
CTGGCCATTGTACTGCCAGAACGATATGGTGATTTTCTTTTCCTTCGGCC
CTTGGTCGGCAGTGTGACAAGGAAATGCAATCTGAGTTCGTGACATGAAA
CATTCAAGGAAACA
back to top

protein sequence of EsuBft942_9a-0001

>EsuBft942_9 ID=EsuBft942_9|Name=EsuBft942_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=552bp
MTALCVAFGFFWLLLTLCRRWWLAIATGIASSKKQMESQLEEERAKWQRE
AEIATAAAVAACQAKMQLFFQSQLQEERRKAKLSMKKAVEASKKEALLAF
GQMFGFWGLMVLVQKAGWRSWNYSVPAAMPFRLTDHVPSLANVTELLFFA
HQRASSFPMASWPRFCSMTALCVAFGFFWLLLTLCRRWWLAIATGIASSK
KQMESQLEEERAKWQREAEIATAAAVAACQAKMQLFFQSQLQEERRKAKL
SMKKAVEASKKEALLAFGQMVRENREAKDGKWQKKLDGVEARLLGRVKDE
LGDTPATIASVRADVLQLTKQAADMPAAMEKAVMDEIFRSGTEQLEMGQA
KLREEMARFQQETEEAMGNLTAKLNNVKENTDALGSGLLTVQNIVMKTNG
RRIKKVLYRMEERAEESSRVWGEGPKLGPHFAHWKATKKQLKEDGGGDDD
EGEEQAGGNLPGPPHEEGEQKEEQIEEEADKLSGPPHEEGEQKEGEGEDQ
RSRPNGKTRRGKRGRKSKKAVGDGEGDDSSAANGSNAMSGGGEGGQDFSA
GT
back to top

mRNA from alignment at Scaffold_467:107406..110396-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft942_9a-0001 ID=EsuBft942_9a-0001|Name=EsuBft942_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2991bp|location=Sequence derived from alignment at Scaffold_467:107406..110396- (Ectocarpus subulatus male Bft15b)
ATGACGGCGCTGTGCGTCGCCTTTGGCTTCTTCTGGCTGTTGCTCACCCT
CTGCCGGCGTTGGTGGCTGGCCATCGCCACCGGCATCGCGTCGTCGAAGA
AGCAGATGGAGAGCCAACTTGAGGAGGAGAGGGCGAAGTGGCAGAGGGAG
GCAGAGATTGCCACCGCCGCTGCCGTCGCCGCGTGTCAGGCGAAGATGCA
GCTGTTTTTCCAGAGCCAGCTCCAGGAGGAGAGGCGGAAGGCCAAGCTGT
CGATGAAGAAGGCCGTCGAGGCCTCCAAAAAGGAGGCGCTGCTCGCCTTT
GGGCAGATGGTCCGGGAGAACCGTGAGGCCAAGGACGGCAAGTGGCAGAA
TCCAGTTCGGGTTCTGGGGCCTCATGGTCTTGGTCCAGAAGGCAGGGTGG
CGTTCGTGGAACTACAGCGTGCCTGCTGCCATGCCTTTCAGGTATGCTTC
GGTCATGTTCTTCGTGCACGGCAGTGTTCCTTGGAACATCGCTGCTTCAG
ACGATACGTTCCCCCGTCGGCTTGGAGCGCATCGTGTGTGCCCAACTGTT
GGGTGGATGGCGAGAGCCATGCCACTGGTGATGACGTTACCCGCGATGTT
GGTGAAATTGGCGCTGAACCATCTTTCAGGGATAAGATTCCCTGCCATCA
CGGGAGTTCCGTCTCAACAGTATTTTCTGTTCTGCAGCTGTGCGATTGCC
TGATGAGTTTCTCAGCGCTGCTGCCAAATATGTCCGTACCTTCCGTAACT
TGACGTGTTGCATAGCGTGTTCTTACCCTTGGTACGGGGTACGCACGAAT
GCCTATGCCTGGAATCGCGCATGAGGTTCGCCGTTTGGTTTTGGAGCTTT
CATCGATGCGCACTTACATATTCGACAGCAGTGACTAGCCTTGATGCCGC
CGTAATCGGCGTAGAAATTACTTCAACACGCATGACAGCAGTTCGACATC
CACGACTTGCTTTGACCCCTCCCCTTCCTCCCGACCTTGTCCGCCGTGAC
CCCCCTGTTCTCCTGGATACAGGCTCACCGATCATGTCCCTTCCTTGGCG
AATGTCACAGAGCTCCTCTTCTTCGCCCATCAGAGAGCGTCCAGTTTCCC
GATGGCCAGCTGGCCTAGATTCTGTTCGATGACGGCGCTGTGCGTCGCCT
TTGGCTTCTTCTGGCTGTTGCTCACCCTCTGCCGGCGTTGGTGGCTGGCC
ATCGCCACCGGCATCGCGTCGTCGAAGAAGCAGATGGAGAGCCAACTTGA
GGAGGAGAGGGCGAAGTGGCAGAGGGAGGCAGAGATTGCCACCGCCGCTG
CCGTCGCCGCGTGTCAGGCGAAGATGCAGCTGTTTTTCCAGAGCCAGCTC
CAGGAGGAGAGGCGGAAGGCCAAGCTGTCGATGAAGAAGGCCGTCGAGGC
CTCCAAAAAGGAGGCGCTGCTCGCCTTTGGGCAGATGGTCCGGGAGAACC
GTGAGGCCAAGGACGGCAAGTGGCAGAAGAAGCTCGACGGCGTCGAGGCT
AGGCTTCTGGGTCGCGTGAAGGACGAGCTTGGTGACACGCCTGCCACCAT
CGCCTCCGTCCGCGCAGACGTCCTTCAGCTGACAAAGCAAGCTGCCGACA
TGCCTGCTGCCATGGAGAAGGCGGTGATGGACGAGATATTCCGCTCCGGC
ACCGAGCAGCTGGAGATGGGGCAGGCCAAGCTTCGTGAGGAGATGGCCAG
ATTCCAGCAGGAGACCGAGGAGGCTATGGGGAACCTCACGGCCAAGCTGA
ACAACGTCAAGGAGAACACCGACGCCCTCGGATCTGGCCTCCTGACGGTT
CAGAACATCGTCATGAAAACTAATGGGCGCAGGATCAAGAAGGTCCTGTA
CAGGATGGAGGAGAGAGCGGAGGAGTCCAGCAGAGTGTGGGGCGAGGGAC
CCAAGCTAGGCCCACACTTCGCCCATTGGAAGGCCACCAAGAAGCAACTC
AAGGAAGACGGGGGGGGCGACGACGACGAGGGCGAGGAGCAGGCGGGCGG
GAACCTCCCGGGGCCGCCCCACGAGGAGGGGGAGCAGAAGGAGGAGCAGA
TTGAGGAGGAGGCCGACAAACTCTCAGGGCCGCCACATGAGGAGGGGGAG
CAGAAGGAGGGGGAGGGGGAGGACCAGCGCTCACGGCCGAACGGGAAGAC
CAGGAGAGGAAAACGCGGGCGCAAGTCAAAGAAGGCGGTAGGAGATGGAG
AGGGAGATGACAGCAGTGCCGCCAACGGATCGAACGCCATGTCCGGGGGA
GGGGAGGGGGGACAGGACTTCTCCGCCGGTACCTAGAGCAGCAGCAGGGT
TGATTTTGTTTGTTATCTTGGCAGTAAACTTGCTCTCGAAGGCGTTGAGC
GGGGTGTCGGTTCATCCGACCCTTTGCCCCGCCTCAGGTGCAGTTTACTG
TCAAGCCGTGGAATCAGAACAGTTTTACAGCTATGGCTTTGGTCCATCAG
TGGGTTTGCTTTCGACGGATGTGGCACGGACTACTATGTACTTCGTATTT
GGAGGTCCTTGTTGCCTATCCCCGATGGTGCATTTCCATAAACGGCAAAA
ACTCGAGCCCATGTACAACTAGATTGTTTCCACGATCAACGACTTTTTTT
CCTGTTAGCCCGGTTTGCGTGCTACTTATTTCGGGAAAATCGGGCACATG
CGGTTTTTTTTGCATCCCTCGCTTCTCGCTGAAGGGGGCTGCGGCGAGAG
GAGCATTGTGGCTCCAGCTTGCGTCTGTTCTTGATTCGATCTCAAGGATT
GTGGGGGGGCGTGTCTGCGGGCTCTTTCTGCCTGCCCGGTTGGTGCTGCG
TTTCGTGCCGAAGCGCAGGGGTCACGTGGTGTTGGATTCCTGTTAACTTG
TGCCCATTGGTTGTAGAAGAAGTAAACCTGGCCATTGTACTGCCAGAACG
ATATGGTGATTTTCTTTTCCTTCGGCCCTTGGTCGGCAGTGTGACAAGGA
AATGCAATCTGAGTTCGTGACATGAAACATTCAAGGAAACA
back to top

Coding sequence (CDS) from alignment at Scaffold_467:107406..110396-

>EsuBft942_9a-0001 ID=EsuBft942_9a-0001|Name=EsuBft942_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1659bp|location=Sequence derived from alignment at Scaffold_467:107406..110396- (Ectocarpus subulatus male Bft15b)
ATGACGGCGCTGTGCGTCGCCTTTGGCTTCTTCTGGCTGTTGCTCACCCT
CTGCCGGCGTTGGTGGCTGGCCATCGCCACCGGCATCGCGTCGTCGAAGA
AGCAGATGGAGAGCCAACTTGAGGAGGAGAGGGCGAAGTGGCAGAGGGAG
GCAGAGATTGCCACCGCCGCTGCCGTCGCCGCGTGTCAGGCGAAGATGCA
GCTGTTTTTCCAGAGCCAGCTCCAGGAGGAGAGGCGGAAGGCCAAGCTGT
CGATGAAGAAGGCCGTCGAGGCCTCCAAAAAGGAGGCGCTGCTCGCCTTT
GGGCAGATGTTCGGGTTCTGGGGCCTCATGGTCTTGGTCCAGAAGGCAGG
GTGGCGTTCGTGGAACTACAGCGTGCCTGCTGCCATGCCTTTCAGGCTCA
CCGATCATGTCCCTTCCTTGGCGAATGTCACAGAGCTCCTCTTCTTCGCC
CATCAGAGAGCGTCCAGTTTCCCGATGGCCAGCTGGCCTAGATTCTGTTC
GATGACGGCGCTGTGCGTCGCCTTTGGCTTCTTCTGGCTGTTGCTCACCC
TCTGCCGGCGTTGGTGGCTGGCCATCGCCACCGGCATCGCGTCGTCGAAG
AAGCAGATGGAGAGCCAACTTGAGGAGGAGAGGGCGAAGTGGCAGAGGGA
GGCAGAGATTGCCACCGCCGCTGCCGTCGCCGCGTGTCAGGCGAAGATGC
AGCTGTTTTTCCAGAGCCAGCTCCAGGAGGAGAGGCGGAAGGCCAAGCTG
TCGATGAAGAAGGCCGTCGAGGCCTCCAAAAAGGAGGCGCTGCTCGCCTT
TGGGCAGATGGTCCGGGAGAACCGTGAGGCCAAGGACGGCAAGTGGCAGA
AGAAGCTCGACGGCGTCGAGGCTAGGCTTCTGGGTCGCGTGAAGGACGAG
CTTGGTGACACGCCTGCCACCATCGCCTCCGTCCGCGCAGACGTCCTTCA
GCTGACAAAGCAAGCTGCCGACATGCCTGCTGCCATGGAGAAGGCGGTGA
TGGACGAGATATTCCGCTCCGGCACCGAGCAGCTGGAGATGGGGCAGGCC
AAGCTTCGTGAGGAGATGGCCAGATTCCAGCAGGAGACCGAGGAGGCTAT
GGGGAACCTCACGGCCAAGCTGAACAACGTCAAGGAGAACACCGACGCCC
TCGGATCTGGCCTCCTGACGGTTCAGAACATCGTCATGAAAACTAATGGG
CGCAGGATCAAGAAGGTCCTGTACAGGATGGAGGAGAGAGCGGAGGAGTC
CAGCAGAGTGTGGGGCGAGGGACCCAAGCTAGGCCCACACTTCGCCCATT
GGAAGGCCACCAAGAAGCAACTCAAGGAAGACGGGGGGGGCGACGACGAC
GAGGGCGAGGAGCAGGCGGGCGGGAACCTCCCGGGGCCGCCCCACGAGGA
GGGGGAGCAGAAGGAGGAGCAGATTGAGGAGGAGGCCGACAAACTCTCAG
GGCCGCCACATGAGGAGGGGGAGCAGAAGGAGGGGGAGGGGGAGGACCAG
CGCTCACGGCCGAACGGGAAGACCAGGAGAGGAAAACGCGGGCGCAAGTC
AAAGAAGGCGGTAGGAGATGGAGAGGGAGATGACAGCAGTGCCGCCAACG
GATCGAACGCCATGTCCGGGGGAGGGGAGGGGGGACAGGACTTCTCCGCC
GGTACCTAG
back to top