EsuBft942_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft942_8a-0001
Unique Name	EsuBft942_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_467	contig	Scaffold_467:77694..83337 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft942_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	37
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft942_8a	EsuBft942_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_467 77694..83337 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_8a-0001-exon	agat-exon-44848	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 77694..77853 -
EsuBft942_8a-0001-exon	EsuBft942_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 82837..83011 -
EsuBft942_8a-0001-exon	agat-exon-44847	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 83301..83337 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_8a-0001-cds	EsuBft942_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_467 77694..77853 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_8a-0001	EsuBft942_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_467 77694..83337 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_467:77694..83337-
coding sequence from alignment at Scaffold_467:77694..83337-

spliced messenger RNA

>EsuBft942_8a-0001 ID=EsuBft942_8a-0001|Name=EsuBft942_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=372bp|location=Sequence derived from alignment at Scaffold_467:77694..83337- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGGAGGGAAATGTCTCCTGGCAAAGGAAGAAGCTCCTCAGCAAC
AAGCATTGCCGGAGGGGTCAGAATACGAACATTGTCGAGTGCCTTCCTTT
GGGAACGTGTCATCGGTGCACGGAATGAGGTCGACTGCTTGATTGGCGTA
AGGGACAGCGGACAGGGCAACGGGGAAGGAGTCACGAACGCCAACAGAGC
CTTCCGGGAGAGGCACTGCAATGTCGTCGTCCAAGACTTTGATGGTATCA
TCACGGGAACGGAGGGAGAGTTGGGCGATAGACGCGTGGTATTGTGGCGC
AGGGGCCTGGGGATGCAGCACCATCGGCAGCGGCGTCGGCGACGGCTATT
GCCACTGGGGCGCCAGGGGTAG

protein sequence of EsuBft942_8a-0001

>EsuBft942_8 ID=EsuBft942_8|Name=EsuBft942_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=123bp
MEGREMSPGKGRSSSATSIAGGVRIRTLSSAFLWERVIGARNEVDCLIGV
RDSGQGNGEGVTNANRAFRERHCNVVVQDFDGIITGTEGELGDRRVVLWR
RGLGMQHHRQRRRRRLLPLGRQG

mRNA from alignment at Scaffold_467:77694..83337-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft942_8a-0001 ID=EsuBft942_8a-0001|Name=EsuBft942_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5644bp|location=Sequence derived from alignment at Scaffold_467:77694..83337- (Ectocarpus subulatus male Bft15b)
ATGGAGGGGAGGGAAATGTCTCCTGGCAAAGGAAGAAGTAAGGCGTGCTT
GTTTTACATGCGGATAGCGACCCTCTGTCCAGCTTGACGCACAACCATTC
ACGATCGCATGATGAGCTACTGCAGTGTCATTCACTCTTGGGTATCTCTT
GTAGCCCATCCTCGTCTGTCTGTCTGTCTGTCTGTCTGGCTGGCTACCTG
TCTCCTTTACACCGGCACCGTTATCATCGTAGAACAGCGAGGGAGTACAG
GAACAGGCCCAGTACTGGCAATGCTCGCGGCGACAGCGGCGGGGCGGGGA
GGGAGACAGGGTACAAAGTAACGCAGGCTCCTCAGCAACAAGCATTGCCG
GAGGGGTCAGAATACGAACATTGTCGAGTGCCTTCCTTTGGGAACGTGTC
ATCGGTGCACGGAATGAGGTCGACTGCTTGATTGGCGTAAGGGACAGCGG
ACAGGGCAACGGGGAAGGAGTCACGAACGCCAACAGAGCCTTCCGGGAGA
GGTGAGACTCAGTTTATTCCCAGGGGTGTTTCTACAACGTCGCCAATTTC
ACACGATTTTCATTCGACCATTCCGTTGTGGGAGGAGACCTCACTTGAAT
GGGCAAAGTCAGAAGCACGAAGAATTGGAGAGAAAGAGTAGGAGCATAGC
GCGTCGTGGTCGTGTCCATTGAATCACTAGTCTAGACTATGCATGCGAAA
GCACTGTCTATGTACATCCCTGCAGCAAGGTGTTCAATGTTGAGGCGTTT
CATTCATGGCGAAATAGAGTGAATATTGAGAGGCTTACATTCGCCGCCTT
AGGTGGTAAGCAGGTGCTGAAAGCTGGAGGCAATGTTGCAAGGTTAGGTT
CTGTAGGGTACCCACAGATCTATACCGGGGGTAATTACCCTCTGTTTTAC
CCTACAGAACAATTCTGTGAGTTCTGTGCCCGTAGCGCCACAATACCCTA
CACTTCTGTGATTCTGTGACGGTTGCACCACAGTACCCTACACTTCTGTG
AGTTCTGTAGCACATCCCGTACCCTACAGAGATTACCCTCCGGTTCTGTA
ACAGATCCAATACCCCACAGACATTACCCGTACCCTACAGAACCTAACCT
TGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
GGGGGGGGGGTGTTCAGGAGAGACCCCTCTTTGCTTCTCGCTACTGCTGT
TGTGTTGGGAAAAAGTCGGATGGGAACGGAGTTTGCCCCTTGCCTGCTGG
CGAGGAGTAGTCGTGGGGGCGCACCACGAAATCCTTTGCACTCAGGTTTT
CAGTCTTGATCTTTTTTTCGTCGTGCAGGTTTTTCCCCCTCTGGGAAGTG
GAGAGGGTAGAGGAAAACGAACATAGTCTAAACGTGAAATGCTTTTTGTT
TATGTTTATGTTTTTTTTTATTAGTAGTCCTCCGCTGTCACCTGGGAAGT
TGAGGACTGGGATATATAGGGGCCGTACGCAAGCACGCTTCATGTTTTCA
AGTCTTGGTTTAGTACCTTGAAACCGAGTCGAACGAAGGCAAACAGCACA
GTGTGCAAATACAGAGACTCGCGCGGGTACCGAGGGTAATGACCGTCTGT
AGTTACCCTACAGATACCCTACAGAGCCTACCCTGTGAGTTCTGTGACGG
TTGCACCACAGTACCCTACACTTCTGTGAGTTCTGTAGCACACACGGTAC
CCCACAGAGATTACCCTCTTGGTCTGTATACAATACCCTACACTTCTGTG
AGTTCTGTGACGGTTGCACCACAATACCCTACACTTCTGTGAGTTCTGTA
GCACACCCGATACCCAACAGAGATTACCCTCTTGTTCTGTAACAATACCC
CAACACTTCTGTGAGTTCTGTGACGGTCATGCCACAATACCCTACACTTC
TGTGAGTTCTGCAGCACACCCGATACCCTACAGAGATTACCCTCTTGTTC
TGTAACAATACCCCAACACTTCTGTGAGTTCTGTGACGGTCATGCCACAA
TACCCTACACTTCTGTGAGTTCTGTAGCACATCCCGTACCCTACAGAGAT
TACCCTCCGGTTCTGTAACAGATCCAATACCCCACAGACATTACCCGTAC
CCTACAGAACCTAACCTTGAAAGTATGGACAACGCGGTTAATTTTGATGA
TTCATCTCTCCGGATCTGGACTGAAGTGGGACTATTGGATGCTCGCTGTG
TTTCTTCCAATTATTTCGTTGAAAGGAACGGAAGTGGAGATGAAAAGAGA
GGGAAGTGCAGCCAGCCACAGAAGATGGAAGTCAAGATGTGTGGCTTTAG
GATAAGCAGCTAGGCGTAAGGTTGTATCGGCTACCCTCAACAGGCTTCTG
ATGCATTTTCGGGAAATGTAATGGTCGTGGTGTGGGAGAATTGTCGCCGG
CAGAGTGCGTTTGGCGTGCACCGTAGTCATTGATATCCCTGCCGCCTGTC
GGTACAAATAGTCTTGTGTTGAGTAGTGTTTGAAAAGCGATCCGTGAGCA
GAGGATACAGCCCTTCAGGCCAATGCAAGAGCTCGAGACGCTGTACTCCT
CTGTCCCCCCATCCCAGATGTGAGTCCTTTAGGCTCACTTTTGTTCTTTT
TTTCTCTGTTCACCTGCGCGACAACAGCATTATTCTTCCAGAACTACGAG
GGCAGCATTAGCCCGTAGCCGCGCTGCTGTGTCTGCTCTGTGTGCGCGAG
AAATGTGTACAGTGTAGGGTGGCAGTGAATGCCACAACAGGGGCAGTGGA
GTAGTGTCGCAAAGGGAATCGTGTGTGTAGGGGCGAGTAAGCAGGGTTAT
CGGATGGATGTGCAGCACGTGTAAAGTGGGAGCTGCTGGTACTCTGCGTG
TGAGCTGTTGCTCGGTACGTGGCCATGTGCATATTGCGACGGCATCCGAC
GTCATCTCTGGCGAAGCCGTTTTACATCTCCTTGCACGTTGGGCTCGCGA
AATAGCACAAATATCCCGTGCGCGACGAGTGCCGACTAAAACCACACAGA
GCATCACATTTTTTCCCGGTGATCATCGCAACTATTCACGCATGAAAAGT
CTTCGAAGGGTTCAGTAGGTAAATCGAACAAAACTTCATTGGTAAGGATA
CCTTGAACTGACAACGGTGGCATATTGATGGATAAAGGCATTCATTCCGG
CACTTAAAGAGTCCAGTCGTGTCCGCCGAATGTGAAACCTGCGGGCAGCG
GGGGTGCCCAACCAATCAACCCCATGGCATATCTGGTTTGGCACGGCAAA
CGCCAGGATGATGCCCAGGTTCTGGTTCATCCTTGTGAAACGTTTGTACA
TCTGGGCCAGCGAAAACCCGGCATATCGCTCCGTCCCGGCGTTGTAGGGA
TGCGAGGTCAGTCTTCTATATATAATAGCGACTACGGCATGCGTTTACAT
CAGTATAACCCCCCCCCATCGGTACGCTTCGTGCTTGGTGATGTGAGAGC
CTGGTCTGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTGTAAGGATGCGA
GGCCAATGGTCTCGCGACTACGGCATGCACGACTATGAGTACCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCTCGGCGTGAAACG
ACGAGAAGTGATGTAGATAGGATGGATGAGGTGGGAACACATTTTTGAGC
TCCCTTTGGCAAAGTAGGAAGGAACGGTTGGCCATCGGTGATCGCTCCTG
TGCGAACAATGCTTCGTCCTCTCGAGGACGCGTGGTTAGTAAAAGTCAAA
CACCGAAGACATTCAAAACATGAGAACACGCCGCCCGTTCCCGCTCCTTC
TCCCGCACGAACCTTCTCCGAAACGAAACAAGCGACAGCGCAACCGGGTG
CAGTATCAGGCAATCATGCAGCGCGTTCTCAATTTCGAAGCCGAAGTGCG
AGACAAGACAGGTGTTTTCGACGAACCCCGAAGCCACATCTCACACTTTC
CCCCACATCGAGAAGAGTCTTTGGTCGATCCAGTGAGTCGTTGGAATTGT
TGTGTGCATTTTTGCGTTTTCATGATTGTTTTAACCTCGCGACTGATGGT
GTTGGTGATGGTGCTGTTATTGATGCCGTACGGTCTGTCAAGTTCACGAT
CAAAACCGTTGCCCCTCGTGCTGTGTCGCAAACATCGAACTGTCCCTCCC
TGGTTCCAGAAAACGGTGGAGGGCTTGTGATGTGCTGCTGTAGTGCACAA
TGGGCCGCTAGAAGACGGAAAAATGACGTTGCTGCTGGAGATAGATAGCT
TCTGATGACACCAATGAATACCAAGAATACCAAGAGACCTCGACGGCTTC
CATGTCGGGAGACGCCGCGGACTACAGGGTGTTGACCTTCTTCTTTTTGC
CGTCCTGCCGTGATATTGCAGCTATCGTTTCAATGGTCAATCGGTGCTCG
AGATCGATGCGGAATGAACTTCGAAATGGATACACACGCATTTTTATGCC
GGAGGTAGAGGAATCGTGCACGACAGGACGGCAGAGGGCGCTACTACTGC
CACCCTGTGCCTGACAAACACGAAGCAATTCGCATTTATACCGCTTAATC
ATTGCACTTACCCATCATCTGTACTCCCTTGGGCTGCCACGTCCGCTTGC
ACCACACGACCTGGCACCAGGGGTGGGTGATGCCGGCCAAACGTATACCA
CTTCTTTTTTCGTTCTACCTTAGGACATTGCCTTGAACGGTATTGATTGA
GATCACAAGTAGACAGGATGATCAGTATCACACAAGGAATGAGCATCACG
CGAAATGGTATTTCGGAGCATTTTTCGCAACGACGAAATCACTTTTTGAA
ACAAATGAAACTCACTCGTGCTGCTCAGTTTGTTGACTGCCTGGCCTGGT
GCTTTCACTTGGATACCATTGTCCTTGGCATCAGGCACTGCAATGTCGTC
GTCCAAGACTTTGATGGTATCATCACGGGAACGGAGGGAGAGTTGGGCGA
TAGACGCGTGGTATTGTGGCGCAGGGGCCTGGGGATGCAGCACCATCGGC
AGCGGCGTCGGCGACGGCTATTGCCACTGGGGCGCCAGGGGTAG

Coding sequence (CDS) from alignment at Scaffold_467:77694..83337-

>EsuBft942_8a-0001 ID=EsuBft942_8a-0001|Name=EsuBft942_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=372bp|location=Sequence derived from alignment at Scaffold_467:77694..83337- (Ectocarpus subulatus male Bft15b)
ATGGAGGGGAGGGAAATGTCTCCTGGCAAAGGAAGAAGCTCCTCAGCAAC
AAGCATTGCCGGAGGGGTCAGAATACGAACATTGTCGAGTGCCTTCCTTT
GGGAACGTGTCATCGGTGCACGGAATGAGGTCGACTGCTTGATTGGCGTA
AGGGACAGCGGACAGGGCAACGGGGAAGGAGTCACGAACGCCAACAGAGC
CTTCCGGGAGAGGCACTGCAATGTCGTCGTCCAAGACTTTGATGGTATCA
TCACGGGAACGGAGGGAGAGTTGGGCGATAGACGCGTGGTATTGTGGCGC
AGGGGCCTGGGGATGCAGCACCATCGGCAGCGGCGTCGGCGACGGCTATT
GCCACTGGGGCGCCAGGGGTAG