EsuBft942_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft942_4a-0001
Unique NameEsuBft942_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_467contigScaffold_467:42112..46644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog70448.A0A090M5R2
ProteomeIdEsuBft942_4
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl3041|Chlorophyta
Length302
Hectar predicted targeting categorysignal peptide
Evalue5.93e-16
EggNOG OGs28IFV@1|root,2QWFT@2759|Eukaryota,37RGS@33090|Viridiplantae,34KGI@3041|Chlorophyta
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_002190.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft942_4aEsuBft942_4aEctocarpus subulatus male Bft15bgeneScaffold_467 42112..46644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_4a-0001EsuBft942_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_467 42126..44048 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_4a-0001-exonEsuBft942_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_467 42112..42365 +
EsuBft942_4a-0001-exonagat-exon-44836Ectocarpus subulatus male Bft15bexonScaffold_467 42948..43032 +
EsuBft942_4a-0001-exonagat-exon-44833Ectocarpus subulatus male Bft15bexonScaffold_467 43594..46025 +
EsuBft942_4a-0001-exonagat-exon-44834Ectocarpus subulatus male Bft15bexonScaffold_467 46273..46502 +
EsuBft942_4a-0001-exonagat-exon-44835Ectocarpus subulatus male Bft15bexonScaffold_467 46625..46644 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_4a-0001-exonagat-five_prime_utr-15173Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_467 42112..42125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_4a-0001-cdsEsuBft942_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_467 42126..42365 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_4a-0001-exonagat-three_prime_utr-23318Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_467 44049..46025 +
EsuBft942_4a-0001-exonagat-three_prime_utr-23319Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_467 46273..46502 +
EsuBft942_4a-0001-exonagat-three_prime_utr-23320Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_467 46625..46644 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft942_4a-0001 ID=EsuBft942_4a-0001|Name=EsuBft942_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3021bp|location=Sequence derived from alignment at Scaffold_467:42112..46644+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGATGGCCCCGTCATGCCTGAGACGGCGATCTTCACCGCCGTCTTCAAT
GCGCTCGGCTTCCTGCCCGCCATCACGGCGTCCATGCTGGTCGGCGGCGG
GTCCTTCGCGAAGGGGCGGCAGCCGGTGCCGGCGCCGCCGTTCGTGTTCG
GGGCGTTCGCGCTGGGGTTCTTCTCGCTGGGGCCCTACCTGGCCGTAAGG
AACTACCTCCCGCAGGCGGCGGGTGACGAAGGGGAGGAGATGTCCACGTT
GGAGAAAGTCCTCACGAGCAAGGCCTTGGCCGTGCCCCTGCTGGCCTTGT
CGGCGTTCGTGGTATTTTCTCTCGTCTCGGCGCTTACCGGTCGACCTTTC
AATCATCCTAGAAGCATCGGAGTGGTTCGGTCGATCTCTCCTACCAAGTT
CGCCTCGCTGTATTCCACCTCATCGCTTTTCCTGGTACCTAAAAGAGGAT
GCCTTGACGTTCCGAACAGGTTGGAGATGCACTCGCACCGAACTAATTGG
CAAAAGATGAAGGGCAGCAACATCAAACCGACCCCACCCACACCCCTCCC
ATCGAACCCACCCCCTTTCCAAGACCCCGAGGCGATCTCGGCATTTGGGG
AGCTGTTCTGGAGCTCGAAGCTCGCCCACATCTCCACGATGGACCTGTGC
GTGCTGAGCACGGTGATCATCGACCCCATCCGAGAGGACATGCGTCGGAG
AGGCGTTGAGCCGGAGCTGGCGAAGGTAGCCTTGTTTTCGGTGCCCCTGG
TGGGGCCGGCCGCGTGGATGCTGGTTCGACCACCTGTCGAGTAACCTGTG
ATAGCTCTATCCGTTTGCCTACGTACCTCCTCCGTTTTTGATTATGGCAG
TCATAGCCGGCCACGTGAGTTGATCGTGTTTACTGATCTGTCGGGCAATG
TTTGCGCGAAGTCTCGACGGGCCGGTGAAGCACGCAATCTGACGACGAGC
TCACCGTGATCTTGGGAAAGGGGCTGAAGGACCGGACGGTGGTGTTGCTG
AGGCGGCTGTGTTGCGCAGAGGAACTGACCGCCTAGGGTGTGTCGATTGT
ACCGAGGGGGGGACGGACTGTACTCAATGTAACCGCACGCCGTACAGTAG
TCTTGAGACCGCCTAGGGTGTGTCGATTGTACCGAGGCGGGGACGGACTG
TACTCAATGTAACCGCACGCCGTACAGTAGTCTTGAGACCGCCTAGGGTG
TGTCGATTGTACCGAGGCGGGGACGGACTGTACTCAATGTAACCGCACGC
CGTACAGTAGTCTTGAGACCGCCTAGGGTGTGTCGATTGTACCGAGGCGG
GGACGGACTGTACTCAATGTAACCGCACGCCGTACAGTAGTCTTGAGACC
GCCTAGGGTGTGTCGATTGTACCGAGGCGGGGACGGACTGTACTCAATGT
AACCGCACGCCGTACAGTAGTCTTGAGACCGCCTAGGGTGTGTCGATTGT
ACCGAGGCGGGGACGGACTGTACTCAATGTAACCGCACGCCGTACAGTAG
TCTTGAGACCGCCTAGGGTGTGTCGATTGTACCGAGGCGGGGACGGACTG
TACTCAATGTAACCGCACGCCGTACAGTAGTCTTGAGACCATTGATCTCG
CATCCCACCATCGCCGAGGCGGAGCGACATGCCGGGTTTTCGCCGATCCA
GATATACGCACGTTTCACAAGGATGAACCAGAAGCTGGCCATCATCCTGC
GTTTGACGTTCAAACCAGGTATACCATTCCGTGGGTTGACCGGGGGCGGG
GGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGCGGCCGAAGGAC
GACGACGATGCTGCTGGACTTCGGTCTTGGTATCCACAGCATCCAGAAGT
TGCCCGTACACGAGATAGAAAATGTGCACACAGAGTGAGAAAGGGTGTTT
CGGGGAGCCCACAGAAAGGTTGGTCCCGCACGTAATTGACGAGGACTGGA
GATGTAACCTGCCATTACAGGTTTAGTCTAGTGTCCCATGGTTTTCGTAG
GGGCCTCTTACATGCGTTCCGCGTCGTCATTCCGGTGGTCTCTTGAAGTG
AACATGTCCTCCATATCTCGTCCTCGTGAGCAAGAGAGCGATGCTTTGCT
TTCCTATGCTAGCCGGAGACGCGTAACTCTCCAAAGCCTGACCAACCCGA
CGAGTACCGGTCTACTTGTGTACAGAGTCTTTTGTAGGTCGCACAGGATA
CCACACACCCGCACCGGTTACATGTATCAGAGAGCCCGCACTCTGCCCCC
CCGAGCCAAAAGTTTGAAAAAAATGACGGTGCCGAAAATGGCGGCGTTGG
AATTGCCTCGTCACGAGCTTTCTCAAAATGCACCTGTGACGTTCTCTTCA
TCGTGGAGTACGCATATGTCGAGCTTATTGGAATTTAGTCCAGGGGTGTG
TGCTATCTTTCGGTACAACAGTGTCGCGGTCGTGGCAAATCTCGTCCTTC
CCCGAGCGAGCTAATGCACCGCAGTGTTGCGCCAAAGGGAGATTCCAAAC
TCAACCTTGGTTTCGGCTGGACTCTCGGCACCCTCCGTTTTGCCCGGCAT
CTTCCTTCTTACAAACATGATCGTCTCTGTGTCCTCTGGAGTGTTCGAGA
ACACAAGAACATACCGTTGGGTACCTTGATCTCGCTTTTGCTGTTGCTTT
TGTTTTTTGTACATCTGGCTGTCCTGTTTGCTCCGTTACTCCCATGCCCT
GGTGCGTAGTGCCTGGTGCTGGACAAGGGGGGTGGTGCTGCTACTGTAGT
CGAATTGTAGTGTGTGGGCGTGCAGTTCAGTTGTGAGCACGTAAACGTGC
TGTAGGGATTGCACGTGTACCTCCTCGGGCTTGTGTACCCTTTTCTTCCT
AATAGTGTGTGTGTTCTTTAGATCTTCTCATGGCTCTAGCATTTTTGTGA
CCACGGACCGAGTCTTTACTAGATTTTGGGATTAGCAACTGACACGAGAA
TAAACAGCAACAACAACAACA
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protein sequence of EsuBft942_4a-0001

>EsuBft942_4 ID=EsuBft942_4|Name=EsuBft942_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=259bp
MPETAIFTAVFNALGFLPAITASMLVGGGSFAKGRQPVPAPPFVFGAFAL
GFFSLGPYLAVRNYLPQAAGDEGEEMSTLEKVLTSKALAVPLLALSAFVV
FSLVSALTGRPFNHPRSIGVVRSISPTKFASLYSTSSLFLVPKRGCLDVP
NRLEMHSHRTNWQKMKGSNIKPTPPTPLPSNPPPFQDPEAISAFGELFWS
SKLAHISTMDLCVLSTVIIDPIREDMRRRGVEPELAKVALFSVPLVGPAA
WMLVRPPVE
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mRNA from alignment at Scaffold_467:42112..46644+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft942_4a-0001 ID=EsuBft942_4a-0001|Name=EsuBft942_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4533bp|location=Sequence derived from alignment at Scaffold_467:42112..46644+ (Ectocarpus subulatus male Bft15b)
ACGATGGCCCCGTCATGCCTGAGACGGCGATCTTCACCGCCGTCTTCAAT GCGCTCGGCTTCCTGCCCGCCATCACGGCGTCCATGCTGGTCGGCGGCGG GTCCTTCGCGAAGGGGCGGCAGCCGGTGCCGGCGCCGCCGTTCGTGTTCG GGGCGTTCGCGCTGGGGTTCTTCTCGCTGGGGCCCTACCTGGCCGTAAGG AACTACCTCCCGCAGGCGGCGGGTGACGAAGGGGAGGAGATGTCCACGTT GGAGGTGATTTGTCTCGTGTGTGTGTGTGTCTTGCATGTTGGCATCGACC GCGCTAAGAGGCTGACCAATGGAGCGACGTCAGTCGCAGCGCGGCACGAT GTTTCTGAAGGCCCTGATCTGGGACCCCGTGAGCGGGCGTCAAGGGGGAG TTTGCTTATGTGTGTTTTTCCCGATGGCCTGCTTTGGTTTTGATCTTGGT CTTTACAATTTTTGCCTCTGGTGTTGCGGATGTTTCGCGGAGGCGATGAG CGAGACCGGGGGAAGAAATTGTTGAGAGCGGATGCGCGCGCTCTCCGGGT GGCTGAGTCCCTTGCTCGGTTGTGATGCATACTGCCGTGGTTTATTGTGT GGCAGCCAAGAGTAGCCCGTCGCTGCAATGCCGGCCTTTCGACCGCCACT GCGCGGGAAGTTCTTGGTGACGCAGAAATGGGGGCACCAAGGCGTACCGC AATTCGAAGCCGTTCCAGCCCGTGGAGCTCGTGTACCTGCTTCCCCTCCC TCCCCCCGCCCGCGTTCCGCGTGTCTCGGACGTCCCGCGCGTCTCACCTG CTCTGTGCTTGCCGATGTCGAATTTACCGCCCGCAGAAAGTCCTCACGAG CAAGGCCTTGGCCGTGCCCCTGCTGGCCTTGTCGGCGTTCGTGGTATTTT CTCTCGTCTCGGCGCTTACCGGTGAGTTCGAGCAAGAAGCGTTGCCCTGT TCGCGGTCTTTCGGGTTTGCATCGTTCCCTTCTTTTTTGTGACGGCACGC TTCGACGGTGGTAGGTACACGAGCACATTGTATCCCTCTTACACATCCGC CTGCCTGGCCTGCGGTACGGCCTTGCGTGCTCTGTTGAATGAGCTGCCGT CGGGGGTCACGCAGAAAATATACTCTGGGGTGGAGCCATGCCTTATTCAC CAGTTCTGAAAGACAATCATGTTTGAATGCATTATGGCGCCTATATCCTA TCGGCTTGTTGGACGATATAGAGTATTTGCTGAACGTAGTCGTTGCCAGG GTACCTCATTTTCGCTCCAAACTATGGGTATTTCTTCTGTTGGTCTATAA TCAAGAGTTGGCTTGTCGGTCGGTTTGTACACGGTGTGGAATAATGTGCG AAGTAGTGGACAGGGATCTTTTGGCCGACCGTAAGGCTTGACGGTGTAGC AGTGTGTGCCAATCCATGAGCAACGGTGAGAAGAGCACGTCTGTGAGGCA TTATGCCCCAGCGCTTGTCGATGGGTTCACAGGTCGACCTTTCAATCATC CTAGAAGCATCGGAGTGGTTCGGTCGATCTCTCCTACCAAGTTCGCCTCG CTGTATTCCACCTCATCGCTTTTCCTGGTACCTAAAAGAGGATGCCTTGA CGTTCCGAACAGGTTGGAGATGCACTCGCACCGAACTAATTGGCAAAAGA TGAAGGGCAGCAACATCAAACCGACCCCACCCACACCCCTCCCATCGAAC CCACCCCCTTTCCAAGACCCCGAGGCGATCTCGGCATTTGGGGAGCTGTT CTGGAGCTCGAAGCTCGCCCACATCTCCACGATGGACCTGTGCGTGCTGA GCACGGTGATCATCGACCCCATCCGAGAGGACATGCGTCGGAGAGGCGTT GAGCCGGAGCTGGCGAAGGTAGCCTTGTTTTCGGTGCCCCTGGTGGGGCC GGCCGCGTGGATGCTGGTTCGACCACCTGTCGAGTAACCTGTGATAGCTC TATCCGTTTGCCTACGTACCTCCTCCGTTTTTGATTATGGCAGTCATAGC CGGCCACGTGAGTTGATCGTGTTTACTGATCTGTCGGGCAATGTTTGCGC GAAGTCTCGACGGGCCGGTGAAGCACGCAATCTGACGACGAGCTCACCGT GATCTTGGGAAAGGGGCTGAAGGACCGGACGGTGGTGTTGCTGAGGCGGC TGTGTTGCGCAGAGGAACTGACCGCCTAGGGTGTGTCGATTGTACCGAGG GGGGGACGGACTGTACTCAATGTAACCGCACGCCGTACAGTAGTCTTGAG ACCGCCTAGGGTGTGTCGATTGTACCGAGGCGGGGACGGACTGTACTCAA TGTAACCGCACGCCGTACAGTAGTCTTGAGACCGCCTAGGGTGTGTCGAT TGTACCGAGGCGGGGACGGACTGTACTCAATGTAACCGCACGCCGTACAG TAGTCTTGAGACCGCCTAGGGTGTGTCGATTGTACCGAGGCGGGGACGGA CTGTACTCAATGTAACCGCACGCCGTACAGTAGTCTTGAGACCGCCTAGG GTGTGTCGATTGTACCGAGGCGGGGACGGACTGTACTCAATGTAACCGCA CGCCGTACAGTAGTCTTGAGACCGCCTAGGGTGTGTCGATTGTACCGAGG CGGGGACGGACTGTACTCAATGTAACCGCACGCCGTACAGTAGTCTTGAG ACCGCCTAGGGTGTGTCGATTGTACCGAGGCGGGGACGGACTGTACTCAA TGTAACCGCACGCCGTACAGTAGTCTTGAGACCATTGATCTCGCATCCCA CCATCGCCGAGGCGGAGCGACATGCCGGGTTTTCGCCGATCCAGATATAC GCACGTTTCACAAGGATGAACCAGAAGCTGGCCATCATCCTGCGTTTGAC GTTCAAACCAGGTATACCATTCCGTGGGTTGACCGGGGGCGGGGGGGGGN GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGATGCGGCCGAAGGACGACGACG ATGCTGCTGGACTTCGGTCTTGGTATCCACAGCATCCAGAAGTTGCCCGT ACACGAGATAGAAAATGTGCACACAGAGTGAGAAAGGGTGTTTCGGGGAG CCCACAGAAAGGTTGGTCCCGCACGTAATTGACGAGGACTGGAGATGTAA CCTGCCATTACAGGTTTAGTCTAGTGTCCCATGGTTTTCGTAGGGGCCTC TTACATGCGTTCCGCGTCGTCATTCCGGTGGTCTCTTGAAGTGAACATGT CCTCCATATCTCGTCCTCGTGAGCAAGAGAGCGATGCTTTGCTTTCCTAT GCTAGCCGGAGACGCGTAACTCTCCAAAGCCTGACCAACCCGACGAGTAC CGGTCTACTTGTGTACAGAGTCTTTTGTAGGTCGCACAGGATACCACACA CCCGCACCGGTTACATGTATCAGAGAGCCCGCACTCTGCCCCCCCGAGCC AAAAGTTTGAAAAAAATGACGGTGCCGAAAATGGCGGCGTTGGAATTGCC TCGTCACGAGCTTTCTCAAAATGCACCTGTGACGTTCTCTTCATCGTGGA GTACGCATATGTCGAGCTTATTGGAATTTAGTCCAGGGGTGTGTGCTATC TTTCGGTACAACAGTGTCGCGGTCGTGGCAAATCTCGTCCTTCCCCGAGC GAGCTAATGCACCGCAGTGTTGCGCCAAAGGGAGATTCCAAACTCAACCT TGGTTTCGGCTGGACTCTCGGCACCCTCCGTTTTGCCCGGCATCTTCCTT CTTACAAACATGATCGTCTCTGTGTCCTCTGGAGTGTTCGAGAACACAAG AACATACCGTTGGGTACCTTGATCTCGCTTTTGCTGTTGCTTTTGTTTTT TGTACATCTGGCTGTCCTGTTTGCTCCGTTACTCCCATGCCCTGGTGCGT AGTGCCTGGTGCTGGTACGTTACCCTTCGATTTTTCTTTAGGCGGGTGTG GGAAGCGTCCTCCTTTATTTTTGTTTTCATATATTTTGATCGGTTTCCGA GTTGCTCGAACGGTCGGTCCGGTATCCGGTACCTGTATTTCCTTTTTATC ATTTTGTTTTCTGTTTCCGAGTGGTTTGTACCCCGGTGTTAATATTGTAC AGACAGCACTTCAGACAGCAGTACGTTGTAGTCGACAAACATTCATTTCG GTTACATGCAGGACAAGGGGGGTGGTGCTGCTACTGTAGTCGAATTGTAG TGTGTGGGCGTGCAGTTCAGTTGTGAGCACGTAAACGTGCTGTAGGGATT GCACGTGTACCTCCTCGGGCTTGTGTACCCTTTTCTTCCTAATAGTGTGT GTGTTCTTTAGATCTTCTCATGGCTCTAGCATTTTTGTGACCACGGACCG AGTCTTTACTAGATTTTGGGATTAGCAACTGACACGAGAATGTGAAGAAA AACAACAACGAACAACAAACCCTATCTTTGTTTTGTTTCCCCGGGGCGTT GTATGTGTCGGGTTTTGAGACCACGGGCTCCCCATTTTTTGTGGACAACA GAGGTAATGTGAGAAACAGCAACAACAACAACA
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Coding sequence (CDS) from alignment at Scaffold_467:42112..46644+

>EsuBft942_4a-0001 ID=EsuBft942_4a-0001|Name=EsuBft942_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=780bp|location=Sequence derived from alignment at Scaffold_467:42112..46644+ (Ectocarpus subulatus male Bft15b)
ATGCCTGAGACGGCGATCTTCACCGCCGTCTTCAATGCGCTCGGCTTCCT
GCCCGCCATCACGGCGTCCATGCTGGTCGGCGGCGGGTCCTTCGCGAAGG
GGCGGCAGCCGGTGCCGGCGCCGCCGTTCGTGTTCGGGGCGTTCGCGCTG
GGGTTCTTCTCGCTGGGGCCCTACCTGGCCGTAAGGAACTACCTCCCGCA
GGCGGCGGGTGACGAAGGGGAGGAGATGTCCACGTTGGAGAAAGTCCTCA
CGAGCAAGGCCTTGGCCGTGCCCCTGCTGGCCTTGTCGGCGTTCGTGGTA
TTTTCTCTCGTCTCGGCGCTTACCGGTCGACCTTTCAATCATCCTAGAAG
CATCGGAGTGGTTCGGTCGATCTCTCCTACCAAGTTCGCCTCGCTGTATT
CCACCTCATCGCTTTTCCTGGTACCTAAAAGAGGATGCCTTGACGTTCCG
AACAGGTTGGAGATGCACTCGCACCGAACTAATTGGCAAAAGATGAAGGG
CAGCAACATCAAACCGACCCCACCCACACCCCTCCCATCGAACCCACCCC
CTTTCCAAGACCCCGAGGCGATCTCGGCATTTGGGGAGCTGTTCTGGAGC
TCGAAGCTCGCCCACATCTCCACGATGGACCTGTGCGTGCTGAGCACGGT
GATCATCGACCCCATCCGAGAGGACATGCGTCGGAGAGGCGTTGAGCCGG
AGCTGGCGAAGGTAGCCTTGTTTTCGGTGCCCCTGGTGGGGCCGGCCGCG
TGGATGCTGGTTCGACCACCTGTCGAGTAA
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