|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 70448.A0A090M5R2 |
| ProteomeId | EsuBft942_4 |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Max annot lvl | 3041|Chlorophyta |
| Length | 302 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 5.93e-16 |
| EggNOG OGs | 28IFV@1|root,2QWFT@2759|Eukaryota,37RGS@33090|Viridiplantae,34KGI@3041|Chlorophyta |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-11_002190.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft942_4a-0001 ID=EsuBft942_4a-0001|Name=EsuBft942_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3021bp|location=Sequence derived from alignment at Scaffold_467:42112..46644+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ACGATGGCCCCGTCATGCCTGAGACGGCGATCTTCACCGCCGTCTTCAAT GCGCTCGGCTTCCTGCCCGCCATCACGGCGTCCATGCTGGTCGGCGGCGG GTCCTTCGCGAAGGGGCGGCAGCCGGTGCCGGCGCCGCCGTTCGTGTTCG GGGCGTTCGCGCTGGGGTTCTTCTCGCTGGGGCCCTACCTGGCCGTAAGG AACTACCTCCCGCAGGCGGCGGGTGACGAAGGGGAGGAGATGTCCACGTT GGAGAAAGTCCTCACGAGCAAGGCCTTGGCCGTGCCCCTGCTGGCCTTGT CGGCGTTCGTGGTATTTTCTCTCGTCTCGGCGCTTACCGGTCGACCTTTC AATCATCCTAGAAGCATCGGAGTGGTTCGGTCGATCTCTCCTACCAAGTT CGCCTCGCTGTATTCCACCTCATCGCTTTTCCTGGTACCTAAAAGAGGAT GCCTTGACGTTCCGAACAGGTTGGAGATGCACTCGCACCGAACTAATTGG CAAAAGATGAAGGGCAGCAACATCAAACCGACCCCACCCACACCCCTCCC ATCGAACCCACCCCCTTTCCAAGACCCCGAGGCGATCTCGGCATTTGGGG AGCTGTTCTGGAGCTCGAAGCTCGCCCACATCTCCACGATGGACCTGTGC GTGCTGAGCACGGTGATCATCGACCCCATCCGAGAGGACATGCGTCGGAG AGGCGTTGAGCCGGAGCTGGCGAAGGTAGCCTTGTTTTCGGTGCCCCTGG TGGGGCCGGCCGCGTGGATGCTGGTTCGACCACCTGTCGAGTAACCTGTG ATAGCTCTATCCGTTTGCCTACGTACCTCCTCCGTTTTTGATTATGGCAG TCATAGCCGGCCACGTGAGTTGATCGTGTTTACTGATCTGTCGGGCAATG TTTGCGCGAAGTCTCGACGGGCCGGTGAAGCACGCAATCTGACGACGAGC TCACCGTGATCTTGGGAAAGGGGCTGAAGGACCGGACGGTGGTGTTGCTG AGGCGGCTGTGTTGCGCAGAGGAACTGACCGCCTAGGGTGTGTCGATTGT ACCGAGGGGGGGACGGACTGTACTCAATGTAACCGCACGCCGTACAGTAG TCTTGAGACCGCCTAGGGTGTGTCGATTGTACCGAGGCGGGGACGGACTG TACTCAATGTAACCGCACGCCGTACAGTAGTCTTGAGACCGCCTAGGGTG TGTCGATTGTACCGAGGCGGGGACGGACTGTACTCAATGTAACCGCACGC CGTACAGTAGTCTTGAGACCGCCTAGGGTGTGTCGATTGTACCGAGGCGG GGACGGACTGTACTCAATGTAACCGCACGCCGTACAGTAGTCTTGAGACC GCCTAGGGTGTGTCGATTGTACCGAGGCGGGGACGGACTGTACTCAATGT AACCGCACGCCGTACAGTAGTCTTGAGACCGCCTAGGGTGTGTCGATTGT ACCGAGGCGGGGACGGACTGTACTCAATGTAACCGCACGCCGTACAGTAG TCTTGAGACCGCCTAGGGTGTGTCGATTGTACCGAGGCGGGGACGGACTG TACTCAATGTAACCGCACGCCGTACAGTAGTCTTGAGACCATTGATCTCG CATCCCACCATCGCCGAGGCGGAGCGACATGCCGGGTTTTCGCCGATCCA GATATACGCACGTTTCACAAGGATGAACCAGAAGCTGGCCATCATCCTGC GTTTGACGTTCAAACCAGGTATACCATTCCGTGGGTTGACCGGGGGCGGG GGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATGCGGCCGAAGGAC GACGACGATGCTGCTGGACTTCGGTCTTGGTATCCACAGCATCCAGAAGT TGCCCGTACACGAGATAGAAAATGTGCACACAGAGTGAGAAAGGGTGTTT CGGGGAGCCCACAGAAAGGTTGGTCCCGCACGTAATTGACGAGGACTGGA GATGTAACCTGCCATTACAGGTTTAGTCTAGTGTCCCATGGTTTTCGTAG GGGCCTCTTACATGCGTTCCGCGTCGTCATTCCGGTGGTCTCTTGAAGTG AACATGTCCTCCATATCTCGTCCTCGTGAGCAAGAGAGCGATGCTTTGCT TTCCTATGCTAGCCGGAGACGCGTAACTCTCCAAAGCCTGACCAACCCGA CGAGTACCGGTCTACTTGTGTACAGAGTCTTTTGTAGGTCGCACAGGATA CCACACACCCGCACCGGTTACATGTATCAGAGAGCCCGCACTCTGCCCCC CCGAGCCAAAAGTTTGAAAAAAATGACGGTGCCGAAAATGGCGGCGTTGG AATTGCCTCGTCACGAGCTTTCTCAAAATGCACCTGTGACGTTCTCTTCA TCGTGGAGTACGCATATGTCGAGCTTATTGGAATTTAGTCCAGGGGTGTG TGCTATCTTTCGGTACAACAGTGTCGCGGTCGTGGCAAATCTCGTCCTTC CCCGAGCGAGCTAATGCACCGCAGTGTTGCGCCAAAGGGAGATTCCAAAC TCAACCTTGGTTTCGGCTGGACTCTCGGCACCCTCCGTTTTGCCCGGCAT CTTCCTTCTTACAAACATGATCGTCTCTGTGTCCTCTGGAGTGTTCGAGA ACACAAGAACATACCGTTGGGTACCTTGATCTCGCTTTTGCTGTTGCTTT TGTTTTTTGTACATCTGGCTGTCCTGTTTGCTCCGTTACTCCCATGCCCT GGTGCGTAGTGCCTGGTGCTGGACAAGGGGGGTGGTGCTGCTACTGTAGT CGAATTGTAGTGTGTGGGCGTGCAGTTCAGTTGTGAGCACGTAAACGTGC TGTAGGGATTGCACGTGTACCTCCTCGGGCTTGTGTACCCTTTTCTTCCT AATAGTGTGTGTGTTCTTTAGATCTTCTCATGGCTCTAGCATTTTTGTGA CCACGGACCGAGTCTTTACTAGATTTTGGGATTAGCAACTGACACGAGAA TAAACAGCAACAACAACAACA back to topprotein sequence of EsuBft942_4a-0001 >EsuBft942_4 ID=EsuBft942_4|Name=EsuBft942_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=259bp
MPETAIFTAVFNALGFLPAITASMLVGGGSFAKGRQPVPAPPFVFGAFAL GFFSLGPYLAVRNYLPQAAGDEGEEMSTLEKVLTSKALAVPLLALSAFVV FSLVSALTGRPFNHPRSIGVVRSISPTKFASLYSTSSLFLVPKRGCLDVP NRLEMHSHRTNWQKMKGSNIKPTPPTPLPSNPPPFQDPEAISAFGELFWS SKLAHISTMDLCVLSTVIIDPIREDMRRRGVEPELAKVALFSVPLVGPAA WMLVRPPVE back to topmRNA from alignment at Scaffold_467:42112..46644+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft942_4a-0001 ID=EsuBft942_4a-0001|Name=EsuBft942_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4533bp|location=Sequence derived from alignment at Scaffold_467:42112..46644+ (Ectocarpus subulatus male Bft15b) ACGATGGCCCCGTCATGCCTGAGACGGCGATCTTCACCGCCGTCTTCAAT
GCGCTCGGCTTCCTGCCCGCCATCACGGCGTCCATGCTGGTCGGCGGCGG
GTCCTTCGCGAAGGGGCGGCAGCCGGTGCCGGCGCCGCCGTTCGTGTTCG
GGGCGTTCGCGCTGGGGTTCTTCTCGCTGGGGCCCTACCTGGCCGTAAGG
AACTACCTCCCGCAGGCGGCGGGTGACGAAGGGGAGGAGATGTCCACGTT
GGAGGTGATTTGTCTCGTGTGTGTGTGTGTCTTGCATGTTGGCATCGACC
GCGCTAAGAGGCTGACCAATGGAGCGACGTCAGTCGCAGCGCGGCACGAT
GTTTCTGAAGGCCCTGATCTGGGACCCCGTGAGCGGGCGTCAAGGGGGAG
TTTGCTTATGTGTGTTTTTCCCGATGGCCTGCTTTGGTTTTGATCTTGGT
CTTTACAATTTTTGCCTCTGGTGTTGCGGATGTTTCGCGGAGGCGATGAG
CGAGACCGGGGGAAGAAATTGTTGAGAGCGGATGCGCGCGCTCTCCGGGT
GGCTGAGTCCCTTGCTCGGTTGTGATGCATACTGCCGTGGTTTATTGTGT
GGCAGCCAAGAGTAGCCCGTCGCTGCAATGCCGGCCTTTCGACCGCCACT
GCGCGGGAAGTTCTTGGTGACGCAGAAATGGGGGCACCAAGGCGTACCGC
AATTCGAAGCCGTTCCAGCCCGTGGAGCTCGTGTACCTGCTTCCCCTCCC
TCCCCCCGCCCGCGTTCCGCGTGTCTCGGACGTCCCGCGCGTCTCACCTG
CTCTGTGCTTGCCGATGTCGAATTTACCGCCCGCAGAAAGTCCTCACGAG
CAAGGCCTTGGCCGTGCCCCTGCTGGCCTTGTCGGCGTTCGTGGTATTTT
CTCTCGTCTCGGCGCTTACCGGTGAGTTCGAGCAAGAAGCGTTGCCCTGT
TCGCGGTCTTTCGGGTTTGCATCGTTCCCTTCTTTTTTGTGACGGCACGC
TTCGACGGTGGTAGGTACACGAGCACATTGTATCCCTCTTACACATCCGC
CTGCCTGGCCTGCGGTACGGCCTTGCGTGCTCTGTTGAATGAGCTGCCGT
CGGGGGTCACGCAGAAAATATACTCTGGGGTGGAGCCATGCCTTATTCAC
CAGTTCTGAAAGACAATCATGTTTGAATGCATTATGGCGCCTATATCCTA
TCGGCTTGTTGGACGATATAGAGTATTTGCTGAACGTAGTCGTTGCCAGG
GTACCTCATTTTCGCTCCAAACTATGGGTATTTCTTCTGTTGGTCTATAA
TCAAGAGTTGGCTTGTCGGTCGGTTTGTACACGGTGTGGAATAATGTGCG
AAGTAGTGGACAGGGATCTTTTGGCCGACCGTAAGGCTTGACGGTGTAGC
AGTGTGTGCCAATCCATGAGCAACGGTGAGAAGAGCACGTCTGTGAGGCA
TTATGCCCCAGCGCTTGTCGATGGGTTCACAGGTCGACCTTTCAATCATC
CTAGAAGCATCGGAGTGGTTCGGTCGATCTCTCCTACCAAGTTCGCCTCG
CTGTATTCCACCTCATCGCTTTTCCTGGTACCTAAAAGAGGATGCCTTGA
CGTTCCGAACAGGTTGGAGATGCACTCGCACCGAACTAATTGGCAAAAGA
TGAAGGGCAGCAACATCAAACCGACCCCACCCACACCCCTCCCATCGAAC
CCACCCCCTTTCCAAGACCCCGAGGCGATCTCGGCATTTGGGGAGCTGTT
CTGGAGCTCGAAGCTCGCCCACATCTCCACGATGGACCTGTGCGTGCTGA
GCACGGTGATCATCGACCCCATCCGAGAGGACATGCGTCGGAGAGGCGTT
GAGCCGGAGCTGGCGAAGGTAGCCTTGTTTTCGGTGCCCCTGGTGGGGCC
GGCCGCGTGGATGCTGGTTCGACCACCTGTCGAGTAACCTGTGATAGCTC
TATCCGTTTGCCTACGTACCTCCTCCGTTTTTGATTATGGCAGTCATAGC
CGGCCACGTGAGTTGATCGTGTTTACTGATCTGTCGGGCAATGTTTGCGC
GAAGTCTCGACGGGCCGGTGAAGCACGCAATCTGACGACGAGCTCACCGT
GATCTTGGGAAAGGGGCTGAAGGACCGGACGGTGGTGTTGCTGAGGCGGC
TGTGTTGCGCAGAGGAACTGACCGCCTAGGGTGTGTCGATTGTACCGAGG
GGGGGACGGACTGTACTCAATGTAACCGCACGCCGTACAGTAGTCTTGAG
ACCGCCTAGGGTGTGTCGATTGTACCGAGGCGGGGACGGACTGTACTCAA
TGTAACCGCACGCCGTACAGTAGTCTTGAGACCGCCTAGGGTGTGTCGAT
TGTACCGAGGCGGGGACGGACTGTACTCAATGTAACCGCACGCCGTACAG
TAGTCTTGAGACCGCCTAGGGTGTGTCGATTGTACCGAGGCGGGGACGGA
CTGTACTCAATGTAACCGCACGCCGTACAGTAGTCTTGAGACCGCCTAGG
GTGTGTCGATTGTACCGAGGCGGGGACGGACTGTACTCAATGTAACCGCA
CGCCGTACAGTAGTCTTGAGACCGCCTAGGGTGTGTCGATTGTACCGAGG
CGGGGACGGACTGTACTCAATGTAACCGCACGCCGTACAGTAGTCTTGAG
ACCGCCTAGGGTGTGTCGATTGTACCGAGGCGGGGACGGACTGTACTCAA
TGTAACCGCACGCCGTACAGTAGTCTTGAGACCATTGATCTCGCATCCCA
CCATCGCCGAGGCGGAGCGACATGCCGGGTTTTCGCCGATCCAGATATAC
GCACGTTTCACAAGGATGAACCAGAAGCTGGCCATCATCCTGCGTTTGAC
GTTCAAACCAGGTATACCATTCCGTGGGTTGACCGGGGGCGGGGGGGGGN
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGATGCGGCCGAAGGACGACGACG
ATGCTGCTGGACTTCGGTCTTGGTATCCACAGCATCCAGAAGTTGCCCGT
ACACGAGATAGAAAATGTGCACACAGAGTGAGAAAGGGTGTTTCGGGGAG
CCCACAGAAAGGTTGGTCCCGCACGTAATTGACGAGGACTGGAGATGTAA
CCTGCCATTACAGGTTTAGTCTAGTGTCCCATGGTTTTCGTAGGGGCCTC
TTACATGCGTTCCGCGTCGTCATTCCGGTGGTCTCTTGAAGTGAACATGT
CCTCCATATCTCGTCCTCGTGAGCAAGAGAGCGATGCTTTGCTTTCCTAT
GCTAGCCGGAGACGCGTAACTCTCCAAAGCCTGACCAACCCGACGAGTAC
CGGTCTACTTGTGTACAGAGTCTTTTGTAGGTCGCACAGGATACCACACA
CCCGCACCGGTTACATGTATCAGAGAGCCCGCACTCTGCCCCCCCGAGCC
AAAAGTTTGAAAAAAATGACGGTGCCGAAAATGGCGGCGTTGGAATTGCC
TCGTCACGAGCTTTCTCAAAATGCACCTGTGACGTTCTCTTCATCGTGGA
GTACGCATATGTCGAGCTTATTGGAATTTAGTCCAGGGGTGTGTGCTATC
TTTCGGTACAACAGTGTCGCGGTCGTGGCAAATCTCGTCCTTCCCCGAGC
GAGCTAATGCACCGCAGTGTTGCGCCAAAGGGAGATTCCAAACTCAACCT
TGGTTTCGGCTGGACTCTCGGCACCCTCCGTTTTGCCCGGCATCTTCCTT
CTTACAAACATGATCGTCTCTGTGTCCTCTGGAGTGTTCGAGAACACAAG
AACATACCGTTGGGTACCTTGATCTCGCTTTTGCTGTTGCTTTTGTTTTT
TGTACATCTGGCTGTCCTGTTTGCTCCGTTACTCCCATGCCCTGGTGCGT
AGTGCCTGGTGCTGGTACGTTACCCTTCGATTTTTCTTTAGGCGGGTGTG
GGAAGCGTCCTCCTTTATTTTTGTTTTCATATATTTTGATCGGTTTCCGA
GTTGCTCGAACGGTCGGTCCGGTATCCGGTACCTGTATTTCCTTTTTATC
ATTTTGTTTTCTGTTTCCGAGTGGTTTGTACCCCGGTGTTAATATTGTAC
AGACAGCACTTCAGACAGCAGTACGTTGTAGTCGACAAACATTCATTTCG
GTTACATGCAGGACAAGGGGGGTGGTGCTGCTACTGTAGTCGAATTGTAG
TGTGTGGGCGTGCAGTTCAGTTGTGAGCACGTAAACGTGCTGTAGGGATT
GCACGTGTACCTCCTCGGGCTTGTGTACCCTTTTCTTCCTAATAGTGTGT
GTGTTCTTTAGATCTTCTCATGGCTCTAGCATTTTTGTGACCACGGACCG
AGTCTTTACTAGATTTTGGGATTAGCAACTGACACGAGAATGTGAAGAAA
AACAACAACGAACAACAAACCCTATCTTTGTTTTGTTTCCCCGGGGCGTT
GTATGTGTCGGGTTTTGAGACCACGGGCTCCCCATTTTTTGTGGACAACA
GAGGTAATGTGAGAAACAGCAACAACAACAACA back to topCoding sequence (CDS) from alignment at Scaffold_467:42112..46644+ >EsuBft942_4a-0001 ID=EsuBft942_4a-0001|Name=EsuBft942_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=780bp|location=Sequence derived from alignment at Scaffold_467:42112..46644+ (Ectocarpus subulatus male Bft15b) ATGCCTGAGACGGCGATCTTCACCGCCGTCTTCAATGCGCTCGGCTTCCT GCCCGCCATCACGGCGTCCATGCTGGTCGGCGGCGGGTCCTTCGCGAAGG GGCGGCAGCCGGTGCCGGCGCCGCCGTTCGTGTTCGGGGCGTTCGCGCTG GGGTTCTTCTCGCTGGGGCCCTACCTGGCCGTAAGGAACTACCTCCCGCA GGCGGCGGGTGACGAAGGGGAGGAGATGTCCACGTTGGAGAAAGTCCTCA CGAGCAAGGCCTTGGCCGTGCCCCTGCTGGCCTTGTCGGCGTTCGTGGTA TTTTCTCTCGTCTCGGCGCTTACCGGTCGACCTTTCAATCATCCTAGAAG CATCGGAGTGGTTCGGTCGATCTCTCCTACCAAGTTCGCCTCGCTGTATT CCACCTCATCGCTTTTCCTGGTACCTAAAAGAGGATGCCTTGACGTTCCG AACAGGTTGGAGATGCACTCGCACCGAACTAATTGGCAAAAGATGAAGGG CAGCAACATCAAACCGACCCCACCCACACCCCTCCCATCGAACCCACCCC CTTTCCAAGACCCCGAGGCGATCTCGGCATTTGGGGAGCTGTTCTGGAGC TCGAAGCTCGCCCACATCTCCACGATGGACCTGTGCGTGCTGAGCACGGT GATCATCGACCCCATCCGAGAGGACATGCGTCGGAGAGGCGTTGAGCCGG AGCTGGCGAAGGTAGCCTTGTTTTCGGTGCCCCTGGTGGGGCCGGCCGCG TGGATGCTGGTTCGACCACCTGTCGAGTAA back to top
|