EsuBft942_26a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft942_26a-0001
Unique NameEsuBft942_26a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_467contigScaffold_467:233720..234407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog164328.Phyra85923
ProteomeIdEsuBft942_26
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Notecopia protein os:drosophila melanogaster gn:gip pe:1 sv:3 [Automatic annotation]
Nb exon2
Max annot lvl4776|Peronosporales
Length592
Hectar predicted targeting categoryother localisation
Evalue9.78e-30
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Date last modified2016-06-13
Date creation2016-06-13
Descriptiontransposition, RNA-mediated
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft942_26aEsuBft942_26aEctocarpus subulatus male Bft15bgeneScaffold_467 233720..234407 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_26a-0001-exonagat-exon-44900Ectocarpus subulatus male Bft15bexonScaffold_467 233720..234005 +
EsuBft942_26a-0001-exonEsuBft942_26a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_467 234102..234407 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_26a-0001-exonagat-five_prime_utr-15168Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_467 233720..233768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_26a-0001-cdsEsuBft942_26a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_467 233769..234005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_26a-0001EsuBft942_26Ectocarpus subulatus male Bft15bpolypeptideScaffold_467 233769..234407 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft942_26a-0001 ID=EsuBft942_26a-0001|Name=EsuBft942_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=592bp|location=Sequence derived from alignment at Scaffold_467:233720..234407+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGCGATCGGATGCCTGA
TGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCTGAACAAGCTC
CAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACGCGCTTGTGCG
GATCATGTCCTACCTGAACTTTACGAAGGACTTCGGCATCACCTACGTAC
GTGGGTCAGGACTAGACCTAAACGTGTTTGTCGATGCCAGCTACGCTGAC
AACAAAGTAGACAGGCGTTCTACGACCGGGCTAGCTGGCGTGAAGGAGGC
GTTGCTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCGGGACGAGTGGGG
CGAAGATCAAGATCCTTGAGGACAACCAAGGGGCTCTCGCCTTAATCGAG
AACCCGTTCAGCTCAGCGAGGAGCGAGCACATCGACGTGCGGTTCCATTT
CATTCTCGAGCTATTCAAGTCGGGCAAGATCACTGCAGAGTATGTTCCGA
CTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGCAGAGAGAAG
TTGGAGTACCACCGGAAGGCTCTGATGAACCTACCGATGTAG
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protein sequence of EsuBft942_26a-0001

>EsuBft942_26 ID=EsuBft942_26|Name=EsuBft942_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=180bp
MWTKLTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYV
RGSGLDLNVFVDASYADNKVDRRSTTGLAGVKEALLVRGVLSFIAPGTSG
AKIKILEDNQGALALIENPFSSARSEHIDVRFHFILELFKSGKITAEYVP
TGEQHADMLTKVLGREKLEYHRKALMNLPM
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mRNA from alignment at Scaffold_467:233720..234407+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft942_26a-0001 ID=EsuBft942_26a-0001|Name=EsuBft942_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=688bp|location=Sequence derived from alignment at Scaffold_467:233720..234407+ (Ectocarpus subulatus male Bft15b)
TGACGAGCCCGCGGTGGATAAGCCTGTGAGGGAGGCGATCGGATGCCTGA
TGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCTGAACAAGCTC
CAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACGCGCTTGTGCG
GATCATGTCCTACCTGAACTTTACGAAGGACTTCGGCATCACCTACGTAC
GTGGGTCAGGACTAGACCTAAACGTGTTTGTCGATGCCAGCTACGCTGAC
AACAAAGTAGACAGGCGTTCTACGACCGGGCTAGCTGTGACTGTAGGTAG
TACCGTAGTGTGCGCATCCACCAAGACGCAGCCAGTGACGGCTCAGTCGA
CCTCGGAAGCAGAGCATATGGCAGCCGGGGAGGGCGTGAAGGAGGCGTTG
CTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCGGGACGAGTGGGGCGAA
GATCAAGATCCTTGAGGACAACCAAGGGGCTCTCGCCTTAATCGAGAACC
CGTTCAGCTCAGCGAGGAGCGAGCACATCGACGTGCGGTTCCATTTCATT
CTCGAGCTATTCAAGTCGGGCAAGATCACTGCAGAGTATGTTCCGACTGG
AGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGCAGAGAGAAGTTGG
AGTACCACCGGAAGGCTCTGATGAACCTACCGATGTAG
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Coding sequence (CDS) from alignment at Scaffold_467:233720..234407+

>EsuBft942_26a-0001 ID=EsuBft942_26a-0001|Name=EsuBft942_26a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=543bp|location=Sequence derived from alignment at Scaffold_467:233720..234407+ (Ectocarpus subulatus male Bft15b)
ATGTGGACGAAGCTGACGAGGCCAGACATCGCCCTGCCTCTGAACAAGCT
CCAGAAGATCGCCCACTCACCCACCGGGAGGATATGGAACGCGCTTGTGC
GGATCATGTCCTACCTGAACTTTACGAAGGACTTCGGCATCACCTACGTA
CGTGGGTCAGGACTAGACCTAAACGTGTTTGTCGATGCCAGCTACGCTGA
CAACAAAGTAGACAGGCGTTCTACGACCGGGCTAGCTGGCGTGAAGGAGG
CGTTGCTTGTGCGTGGCGTTCTGTCGTTCATAGCGCCCGGGACGAGTGGG
GCGAAGATCAAGATCCTTGAGGACAACCAAGGGGCTCTCGCCTTAATCGA
GAACCCGTTCAGCTCAGCGAGGAGCGAGCACATCGACGTGCGGTTCCATT
TCATTCTCGAGCTATTCAAGTCGGGCAAGATCACTGCAGAGTATGTTCCG
ACTGGAGAGCAGCACGCCGACATGCTGACCAAGGTCCTTGGCAGAGAGAA
GTTGGAGTACCACCGGAAGGCTCTGATGAACCTACCGATGTAG
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