EsuBft942_25a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft942_25a-0001
Unique Name	EsuBft942_25a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_467	contig	Scaffold_467:231713..233718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	3827.XP_004514121.1
ProteomeId	EsuBft942_25
Protein domains	IPR013103
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	3
Max annot lvl	35493\|Streptophyta
Length	1522
Hectar predicted targeting category	other localisation
Evalue	1.41e-37
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37RIF@33090\|Viridiplantae,3G9AM@35493\|Streptophyta,4JTRP@91835\|fabids
Date last modified	2016-06-13
Date creation	2016-06-13
Description	cysteine-rich RLK (RECEPTOR-like protein kinase) 8
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0005515
EC	3.1
GO	0003824
GO	0097159
GO	1901363
GO	0004518
GO	0090304
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft942_25a	EsuBft942_25a	Ectocarpus subulatus male Bft15b	gene	Scaffold_467 231713..233718 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_25a-0001	EsuBft942_25	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_467 231824..233633 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_25a-0001-exon	agat-exon-44898	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 231713..231884 +
EsuBft942_25a-0001-exon	agat-exon-44899	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 232168..232359 +
EsuBft942_25a-0001-exon	EsuBft942_25a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 232561..233718 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_25a-0001-exon	agat-five_prime_utr-15167	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_467 231713..231823 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_25a-0001-cds	EsuBft942_25a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_467 231824..231884 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_25a-0001-exon	agat-three_prime_utr-23313	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_467 233634..233718 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_467:231713..233718+
coding sequence from alignment at Scaffold_467:231713..233718+

spliced messenger RNA

>EsuBft942_25a-0001 ID=EsuBft942_25a-0001|Name=EsuBft942_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1522bp|location=Sequence derived from alignment at Scaffold_467:231713..233718+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
ACCTCTCGCAGATGACGAGGAGGGCGGGGAGGGCGAGAGCAGAGCGGATG
CATCACGCCAAGGTTGGGGGTGGTGGGGACGGCGGTAGCGATGGTGATCC
CGGCGACTCCGAGAACCTCGAGGAGTTGAGGTATGATCCACCCAACGACC
GCTACCCCCGCGGGCTAGAAGGGAAGAAACTCTTCTGTGGCGCCTCGAAC
GCTGGCCCGCTGCGCCATGGGCTTGAGAGTGGCCGCACGCGGAAGCAGAC
CCGGGAGATGCAAGGTGCCGGGGAGATGCCGGGGCCTGGAGAAACACCAG
ACCCGGAAGAGGCATTGCTGGCGACCATCCTGGAAACCGGCGGAACATGG
ACTGTTGAGGACTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGA
GGAGCAGACACGCCGTATGGAGAAGATGTACAGGCGCGAGATGCAGGCGG
TGTTGGGCCCGGAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGG
TCTTCGCAACCACTCCCAGACCCACAGCTAAGTATGACCTCGCCAATCGG
GCAGAAGCCGAGCGATGTGGGAGCAGTACCGATGATGTACAAGGATGTGA
TGTGTTCCAAGTACAAGGTGTTCTGGGAGGCGGCCATGAAGAAAGAGATA
GATGGCCACGACAAGACTGGAACCTTTACCAAGGTCAAGGAGCTGCCGGA
GGGGCGCAAGGCCATAGGTTCAAAGTGGGTCTTCTCTTGGAAGACGAATG
AGAAGGGCCTGATAGTCGACGTCAAGGCCCGTATGGTTGCGCGGGGTTTC
TCTCAAACCCCCGGCATCGACTTCCACCACTCATCCTCAGCGTGTCCGTC
TGCAGCATCTATCAAGACGGTGATTGCCGTAGCCACTGAAAAGGGCAAGA
AACTCGCTCACTGGGATGTGAAGCAAGCTTTCATCCACGCTAAGCTAAAA
GAAGAAATATACCTCAGGTTCCCGGAAGGCTGTGGTAGCATGTTCGGCAA
GGCGGTCAAGGTTGAGCGTGCCCTGTATGGCCTAAAGCAGAGTGGCCGTG
AGTGGGGGTTTGAAGCTGCCGATGCCCTCATCGAGAATGGATACGAGCAG
TGCAGGGCTGACCCGTGTGTCTTCCGGAAGCTGGTGGATGGAGAGGTCGT
AGGTCTCATCGTCATCTACGTTGATGACATCTTAGTGGCGGCAGACGAGG
GAGAGCGAGAGGAGTTGTTCGCTTCCTTCAACAAGAACTTTCCGGTGAAA
AATCTGGGGGAGTGTGCCTGGTACGACGGGTGTGCTATCGCCATGCGGGT
CGAAAATGGTATCACCAAGCTGTCCCAGACAGCATAGATGGAGAGTATGC
TGCAGCGGTTTGATGTGACCACGACCGCTTTCACCCCTGTTGCCACCGAT
GCCGACCTAGGGCCGAAGAGAA

protein sequence of EsuBft942_25a-0001

>EsuBft942_25 ID=EsuBft942_25|Name=EsuBft942_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=441bp
MTRRAGRARAERMHHAKVGGGGDGGSDGDPGDSENLEELRYDPPNDRYPR
GLEGKKLFCGASNAGPLRHGLESGRTRKQTREMQGAGEMPGPGETPDPEE
ALLATILETGGTWTVEDYICNSLVKEQWDEEQTRRMEKMYRREMQAVLGP
EQQAFGAEVDASGSSQPLPDPQLSMTSPIGQKPSDVGAVPMMYKDVMCSK
YKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGL
IVDVKARMVARGFSQTPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAH
WDVKQAFIHAKLKEEIYLRFPEGCGSMFGKAVKVERALYGLKQSGREWGF
EAADALIENGYEQCRADPCVFRKLVDGEVVGLIVIYVDDILVAADEGERE
ELFASFNKNFPVKNLGECAWYDGCAIAMRVENGITKLSQTA

mRNA from alignment at Scaffold_467:231713..233718+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft942_25a-0001 ID=EsuBft942_25a-0001|Name=EsuBft942_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2006bp|location=Sequence derived from alignment at Scaffold_467:231713..233718+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
ACCTCTCGCAGATGACGAGGAGGGCGGGGAGGGCGAGAGCAGAGCGGATG
CATCACGCCAAGGTTGGGGGTGGTAGAGACACTCAGAGAGTGAGTCCGAC
CTCGACGTGATAGAGGCTCGTGGACCAGAGCAAGCAACGCCGTTTGTGCG
CGAGGAGGCGCCGACGGCACCCGGCAACGGGATTCCGGGGAACGGAGGCA
GCCTTCCCCCGTCACCCCCTTCGGGAAGGGGCGAATTCGGCGGAGGCAGT
GACAGCCCCACCGACAGCAGCAGCAGCAGCAGCAGCCCGAGCAGCAGCAG
CAGCAGTGACGCCGGCGGTGCCGGCGGCTCGGGCGGAGAAGAGCCGGCGA
CCTAGGTGGGGACGGCGGTAGCGATGGTGATCCCGGCGACTCCGAGAACC
TCGAGGAGTTGAGGTATGATCCACCCAACGACCGCTACCCCCGCGGGCTA
GAAGGGAAGAAACTCTTCTGTGGCGCCTCGAACGCTGGCCCGCTGCGCCA
TGGGCTTGAGAGTGGCCGCACGCGGAAGCAGACCCGGGAGATGCAAGGTG
CCGGGGAGATGCCGGGGCCTGGAGAAACACCAGACCCGGAAGAGGCATTG
CTGGCGACCATCCTGGAAACCGGCGGAACATGGACTGTTGAGGACTACAT
CTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCGTA
TGGAGAAGATGTACAGGCGCGAGATGCAGGCGNCCCGGGAGATGCAAGGT
GCCGGGGAGATGCCGGGGCCTGGAGAAACACCAGACCCGGAAGAGGCATT
GCTGGCGACCATCCTGGAAACCGGCGGAACATGGACTGTTGAGGACTACA
TCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACACGCCGT
ATGGAGAAGATGTACAGGCGCGAGATGCAGGCGGTGTTGGGCCCGGAACA
GCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGCAACCACTCC
CAGACCCACAGCTAAGTATGACCTCGCCAATCGGGCAGAAGCCGAGCGAT
GTGGGAGCAGTACCGATGATGTACAAGGATGTGATGTGTTCCAAGTACAA
GGTGTTCTGGGAGGCGGCCATGAAGAAAGAGATAGATGGCCACGACAAGA
CTGGAACCTTTACCAAGGTCAAGGAGCTGCCGGAGGGGCGCAAGGCCATA
GGTTCAAAGTGGGTCTTCTCTTGGAAGACGAATGAGAAGGGCCTGATAGT
CGACGTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCAAACCCCCGGCA
TCGACTTCCACCACTCATCCTCAGCGTGTCCGTCTGCAGCATCTATCAAG
ACGGTGATTGCCGTAGCCACTGAAAAGGGCAAGAAACTCGCTCACTGGGA
TGTGAAGCAAGCTTTCATCCACGCTAAGCTAAAAGAAGAAATATACCTCA
GGTTCCCGGAAGGCTGTGGTAGCATGTTCGGCAAGGCGGTCAAGGTTGAG
CGTGCCCTGTATGGCCTAAAGCAGAGTGGCCGTGAGTGGGGGTTTGAAGC
TGCCGATGCCCTCATCGAGAATGGATACGAGCAGTGCAGGGCTGACCCGT
GTGTCTTCCGGAAGCTGGTGGATGGAGAGGTCGTAGGTCTCATCGTCATC
TACGTTGATGACATCTTAGTGGCGGCAGACGAGGGAGAGCGAGAGGAGTT
GTTCGCTTCCTTCAACAAGAACTTTCCGGTGAAAAATCTGGGGGAGTGTG
CCTGGTACGACGGGTGTGCTATCGCCATGCGGGTCGAAAATGGTATCACC
AAGCTGTCCCAGACAGCATAGATGGAGAGTATGCTGCAGCGGTTTGATGT
GACCACGACCGCTTTCACCCCTGTTGCCACCGATGCCGACCTAGGGCCGA
AGAGAA

Coding sequence (CDS) from alignment at Scaffold_467:231713..233718+

>EsuBft942_25a-0001 ID=EsuBft942_25a-0001|Name=EsuBft942_25a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1326bp|location=Sequence derived from alignment at Scaffold_467:231713..233718+ (Ectocarpus subulatus male Bft15b)
ATGACGAGGAGGGCGGGGAGGGCGAGAGCAGAGCGGATGCATCACGCCAA
GGTTGGGGGTGGTGGGGACGGCGGTAGCGATGGTGATCCCGGCGACTCCG
AGAACCTCGAGGAGTTGAGGTATGATCCACCCAACGACCGCTACCCCCGC
GGGCTAGAAGGGAAGAAACTCTTCTGTGGCGCCTCGAACGCTGGCCCGCT
GCGCCATGGGCTTGAGAGTGGCCGCACGCGGAAGCAGACCCGGGAGATGC
AAGGTGCCGGGGAGATGCCGGGGCCTGGAGAAACACCAGACCCGGAAGAG
GCATTGCTGGCGACCATCCTGGAAACCGGCGGAACATGGACTGTTGAGGA
CTACATCTGCAACTCGCTTGTGAAGGAGCAGTGGGACGAGGAGCAGACAC
GCCGTATGGAGAAGATGTACAGGCGCGAGATGCAGGCGGTGTTGGGCCCG
GAACAGCAGGCGTTCGGGGCCGAGGTCGACGCCAGCGGGTCTTCGCAACC
ACTCCCAGACCCACAGCTAAGTATGACCTCGCCAATCGGGCAGAAGCCGA
GCGATGTGGGAGCAGTACCGATGATGTACAAGGATGTGATGTGTTCCAAG
TACAAGGTGTTCTGGGAGGCGGCCATGAAGAAAGAGATAGATGGCCACGA
CAAGACTGGAACCTTTACCAAGGTCAAGGAGCTGCCGGAGGGGCGCAAGG
CCATAGGTTCAAAGTGGGTCTTCTCTTGGAAGACGAATGAGAAGGGCCTG
ATAGTCGACGTCAAGGCCCGTATGGTTGCGCGGGGTTTCTCTCAAACCCC
CGGCATCGACTTCCACCACTCATCCTCAGCGTGTCCGTCTGCAGCATCTA
TCAAGACGGTGATTGCCGTAGCCACTGAAAAGGGCAAGAAACTCGCTCAC
TGGGATGTGAAGCAAGCTTTCATCCACGCTAAGCTAAAAGAAGAAATATA
CCTCAGGTTCCCGGAAGGCTGTGGTAGCATGTTCGGCAAGGCGGTCAAGG
TTGAGCGTGCCCTGTATGGCCTAAAGCAGAGTGGCCGTGAGTGGGGGTTT
GAAGCTGCCGATGCCCTCATCGAGAATGGATACGAGCAGTGCAGGGCTGA
CCCGTGTGTCTTCCGGAAGCTGGTGGATGGAGAGGTCGTAGGTCTCATCG
TCATCTACGTTGATGACATCTTAGTGGCGGCAGACGAGGGAGAGCGAGAG
GAGTTGTTCGCTTCCTTCAACAAGAACTTTCCGGTGAAAAATCTGGGGGA
GTGTGCCTGGTACGACGGGTGTGCTATCGCCATGCGGGTCGAAAATGGTA
TCACCAAGCTGTCCCAGACAGCATAG