EsuBft942_24a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft942_24a-0001
Unique NameEsuBft942_24a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_467contigScaffold_467:229749..231665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft942_24
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length191
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft942_24aEsuBft942_24aEctocarpus subulatus male Bft15bgeneScaffold_467 229749..231665 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_24a-0001-exonEsuBft942_24a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_467 229749..231665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_24a-0001-cdsEsuBft942_24a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_467 229749..230324 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_24a-0001-exonagat-three_prime_utr-23312Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_467 230325..231665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_24a-0001EsuBft942_24Ectocarpus subulatus male Bft15bpolypeptideScaffold_467 229749..230324 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft942_24a-0001 ID=EsuBft942_24a-0001|Name=EsuBft942_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1917bp|location=Sequence derived from alignment at Scaffold_467:229749..231665+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGGTAGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGTTA
ACTCGCTGACGGATCAGACGGGCCAGCTAATGTCGCTAGTGGAAGATACC
ATGAAGACAAGCAATAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCTCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG
AAGTAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTGTTCGAGAGTGTGGCCCATCAGGGCGACACAGCGGCGAAGCAGG
GGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACCACCAAGATT
ATAGTAGTGCCATGGAAGATGGTGGTGCTGCTGTTGGCTTTGGATACGGA
GCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACACTTCTCCTCC
GTTCAGCGGGAAATCGAAAGATTTCAACGAATGGCTAAATGATTTCCGCA
TTGCAGCTAATGGCGCAAACATGTAGGAACAATTTGAAGAGAGCGGGAGC
TTGGAGATTCCCGTCAACAGTGGAAAGAGCAAGTTTTCGCTGTCACAGCA
GTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTTCCTGT
CGCACGCGTTGAAAGAAAAAGATCGGAAAATCATGAAGCAGCAGAGACGC
CCCAGGGAGCTCTTCGTGAGCTCAAGGCCGTACACGACCCTGAATCATCT
GTACAGCCGTCAGAGGACATCAAGTCCCTGACGTCGACCAAGATCTCCGG
AGGTGAAAATCCCCAAAGCACCCTCAATGAGATGCTCCAAACCGCAAAGT
CCTCAACCGAGAAAGGACTAACTGTCAACGAAAAGTTCGTCCTTCACCTC
TTCCTGGATGCCCTTTCGGACGAGTATGTCATGACAAAGCACAACCTGCG
ACACGCGAAGGAGTTGACGCGGACCAGTGTGCTAAAGGAAGTAATGATCG
AATACAAGGTGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCG
AAGGGTGCAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAGGGAGCG
GTACTCAGGTAGGAGCCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCGGTG
GCGGAGACTTTAAGTTCCCCGGGCCGGTGCTTTAGGTGTGGACATCATGG
ACATTAAGCGATCGGCTGCACTACCAACGAGAAGGACTTCGTGCCGTGGT
ATGTGCGCTGCGAGGGGTGGGGCCACACCAAAGAAAAGTGCGCGACGGAG
GAGGCCGTCCTAGCGCAAGTGGTGGAGCATGAGAGCGACGTGGACTCCGT
GGAAGACCAGGCGTTTTTTGCCGTGGCAGTCCCCCCGGGCCGAGTGTGGT
ACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGCCAGGCGGT
GTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCGATGTGCAGACA
ACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGGGGATCGGAGGC
GACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGACCTTAGTCCT
ACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGAATGCTGCCCATG
TACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCGTTGGCGGAGGAG
GGCCACACGTATTCGGGGATGAAGGGGGGTCTCACGCTAACCACGAAAGC
CGGGGGGAGGTGTGGTTCCCCCTGACTGGAAAGCTGCTGACCCAACGAGG
CTATCAAATAAAGCCAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN
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protein sequence of EsuBft942_24a-0001

>EsuBft942_24 ID=EsuBft942_24|Name=EsuBft942_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=191bp
MSGSKDGGDSSSDSAAEDRKRSREELVALRTQVNSLTDQTGQLMSLVEDT
MKTSNKEEPAGTMEGAADLGDARESAAAESTNAEVGAPWTGSAQDGRYLR
EPVRECGPSGRHSGEAGGFVPQEVRVAAAHHQDYSSAMEDGGAAVGFGYG
ATTPATGYQSVRYTSPPFSGKSKDFNEWLNDFRIAANGANM
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mRNA from alignment at Scaffold_467:229749..231665+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft942_24a-0001 ID=EsuBft942_24a-0001|Name=EsuBft942_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1917bp|location=Sequence derived from alignment at Scaffold_467:229749..231665+ (Ectocarpus subulatus male Bft15b)
ATGTCAGGTAGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGTTA ACTCGCTGACGGATCAGACGGGCCAGCTAATGTCGCTAGTGGAAGATACC ATGAAGACAAGCAATAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC TGATCTCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG AAGTAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC GAACCTGTTCGAGAGTGTGGCCCATCAGGGCGACACAGCGGCGAAGCAGG GGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACCACCAAGATT ATAGTAGTGCCATGGAAGATGGTGGTGCTGCTGTTGGCTTTGGATACGGA GCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACACTTCTCCTCC GTTCAGCGGGAAATCGAAAGATTTCAACGAATGGCTAAATGATTTCCGCA TTGCAGCTAATGGCGCAAACATGTAGGAACAATTTGAAGAGAGCGGGAGC TTGGAGATTCCCGTCAACAGTGGAAAGAGCAAGTTTTCGCTGTCACAGCA GTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTTCCTGT CGCACGCGTTGAAAGAAAAAGATCGGAAAATCATGAAGCAGCAGAGACGC CCCAGGGAGCTCTTCGTGAGCTCAAGGCCGTACACGACCCTGAATCATCT GTACAGCCGTCAGAGGACATCAAGTCCCTGACGTCGACCAAGATCTCCGG AGGTGAAAATCCCCAAAGCACCCTCAATGAGATGCTCCAAACCGCAAAGT CCTCAACCGAGAAAGGACTAACTGTCAACGAAAAGTTCGTCCTTCACCTC TTCCTGGATGCCCTTTCGGACGAGTATGTCATGACAAAGCACAACCTGCG ACACGCGAAGGAGTTGACGCGGACCAGTGTGCTAAAGGAAGTAATGATCG AATACAAGGTGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCG AAGGGTGCAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAGGGAGCG GTACTCAGGTAGGAGCCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCGGTG GCGGAGACTTTAAGTTCCCCGGGCCGGTGCTTTAGGTGTGGACATCATGG ACATTAAGCGATCGGCTGCACTACCAACGAGAAGGACTTCGTGCCGTGGT ATGTGCGCTGCGAGGGGTGGGGCCACACCAAAGAAAAGTGCGCGACGGAG GAGGCCGTCCTAGCGCAAGTGGTGGAGCATGAGAGCGACGTGGACTCCGT GGAAGACCAGGCGTTTTTTGCCGTGGCAGTCCCCCCGGGCCGAGTGTGGT ACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGCCAGGCGGT GTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCGATGTGCAGACA ACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGGGGATCGGAGGC GACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGACCTTAGTCCT ACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGAATGCTGCCCATG TACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCGTTGGCGGAGGAG GGCCACACGTATTCGGGGATGAAGGGGGGTCTCACGCTAACCACGAAAGC CGGGGGGAGGTGTGGTTCCCCCTGACTGGAAAGCTGCTGACCCAACGAGG CTATCAAATAAAGCCAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_467:229749..231665+

>EsuBft942_24a-0001 ID=EsuBft942_24a-0001|Name=EsuBft942_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=576bp|location=Sequence derived from alignment at Scaffold_467:229749..231665+ (Ectocarpus subulatus male Bft15b)
ATGTCAGGTAGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGTTA
ACTCGCTGACGGATCAGACGGGCCAGCTAATGTCGCTAGTGGAAGATACC
ATGAAGACAAGCAATAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCTCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG
AAGTAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTGTTCGAGAGTGTGGCCCATCAGGGCGACACAGCGGCGAAGCAGG
GGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACCACCAAGATT
ATAGTAGTGCCATGGAAGATGGTGGTGCTGCTGTTGGCTTTGGATACGGA
GCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACACTTCTCCTCC
GTTCAGCGGGAAATCGAAAGATTTCAACGAATGGCTAAATGATTTCCGCA
TTGCAGCTAATGGCGCAAACATGTAG
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