|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft942_24 |
Protein domains | Coil |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 1 |
Length | 191 |
Hectar predicted targeting category | other localisation |
Date last modified | 2016-06-13 |
Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft942_24a-0001 ID=EsuBft942_24a-0001|Name=EsuBft942_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1917bp|location=Sequence derived from alignment at Scaffold_467:229749..231665+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTCAGGTAGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGTTA ACTCGCTGACGGATCAGACGGGCCAGCTAATGTCGCTAGTGGAAGATACC ATGAAGACAAGCAATAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC TGATCTCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG AAGTAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC GAACCTGTTCGAGAGTGTGGCCCATCAGGGCGACACAGCGGCGAAGCAGG GGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACCACCAAGATT ATAGTAGTGCCATGGAAGATGGTGGTGCTGCTGTTGGCTTTGGATACGGA GCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACACTTCTCCTCC GTTCAGCGGGAAATCGAAAGATTTCAACGAATGGCTAAATGATTTCCGCA TTGCAGCTAATGGCGCAAACATGTAGGAACAATTTGAAGAGAGCGGGAGC TTGGAGATTCCCGTCAACAGTGGAAAGAGCAAGTTTTCGCTGTCACAGCA GTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTTCCTGT CGCACGCGTTGAAAGAAAAAGATCGGAAAATCATGAAGCAGCAGAGACGC CCCAGGGAGCTCTTCGTGAGCTCAAGGCCGTACACGACCCTGAATCATCT GTACAGCCGTCAGAGGACATCAAGTCCCTGACGTCGACCAAGATCTCCGG AGGTGAAAATCCCCAAAGCACCCTCAATGAGATGCTCCAAACCGCAAAGT CCTCAACCGAGAAAGGACTAACTGTCAACGAAAAGTTCGTCCTTCACCTC TTCCTGGATGCCCTTTCGGACGAGTATGTCATGACAAAGCACAACCTGCG ACACGCGAAGGAGTTGACGCGGACCAGTGTGCTAAAGGAAGTAATGATCG AATACAAGGTGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCG AAGGGTGCAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAGGGAGCG GTACTCAGGTAGGAGCCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCGGTG GCGGAGACTTTAAGTTCCCCGGGCCGGTGCTTTAGGTGTGGACATCATGG ACATTAAGCGATCGGCTGCACTACCAACGAGAAGGACTTCGTGCCGTGGT ATGTGCGCTGCGAGGGGTGGGGCCACACCAAAGAAAAGTGCGCGACGGAG GAGGCCGTCCTAGCGCAAGTGGTGGAGCATGAGAGCGACGTGGACTCCGT GGAAGACCAGGCGTTTTTTGCCGTGGCAGTCCCCCCGGGCCGAGTGTGGT ACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGCCAGGCGGT GTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCGATGTGCAGACA ACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGGGGATCGGAGGC GACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGACCTTAGTCCT ACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGAATGCTGCCCATG TACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCGTTGGCGGAGGAG GGCCACACGTATTCGGGGATGAAGGGGGGTCTCACGCTAACCACGAAAGC CGGGGGGAGGTGTGGTTCCCCCTGACTGGAAAGCTGCTGACCCAACGAGG CTATCAAATAAAGCCAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNN back to topprotein sequence of EsuBft942_24a-0001 >EsuBft942_24 ID=EsuBft942_24|Name=EsuBft942_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=191bp
MSGSKDGGDSSSDSAAEDRKRSREELVALRTQVNSLTDQTGQLMSLVEDT MKTSNKEEPAGTMEGAADLGDARESAAAESTNAEVGAPWTGSAQDGRYLR EPVRECGPSGRHSGEAGGFVPQEVRVAAAHHQDYSSAMEDGGAAVGFGYG ATTPATGYQSVRYTSPPFSGKSKDFNEWLNDFRIAANGANM back to topmRNA from alignment at Scaffold_467:229749..231665+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft942_24a-0001 ID=EsuBft942_24a-0001|Name=EsuBft942_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1917bp|location=Sequence derived from alignment at Scaffold_467:229749..231665+ (Ectocarpus subulatus male Bft15b) ATGTCAGGTAGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA
AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGTTA
ACTCGCTGACGGATCAGACGGGCCAGCTAATGTCGCTAGTGGAAGATACC
ATGAAGACAAGCAATAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC
TGATCTCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG
AAGTAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC
GAACCTGTTCGAGAGTGTGGCCCATCAGGGCGACACAGCGGCGAAGCAGG
GGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACCACCAAGATT
ATAGTAGTGCCATGGAAGATGGTGGTGCTGCTGTTGGCTTTGGATACGGA
GCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACACTTCTCCTCC
GTTCAGCGGGAAATCGAAAGATTTCAACGAATGGCTAAATGATTTCCGCA
TTGCAGCTAATGGCGCAAACATGTAGGAACAATTTGAAGAGAGCGGGAGC
TTGGAGATTCCCGTCAACAGTGGAAAGAGCAAGTTTTCGCTGTCACAGCA
GTACCGGAGCGAGCAAGTAGAGCTCGCATTCCACGCGTGGAACTTCCTGT
CGCACGCGTTGAAAGAAAAAGATCGGAAAATCATGAAGCAGCAGAGACGC
CCCAGGGAGCTCTTCGTGAGCTCAAGGCCGTACACGACCCTGAATCATCT
GTACAGCCGTCAGAGGACATCAAGTCCCTGACGTCGACCAAGATCTCCGG
AGGTGAAAATCCCCAAAGCACCCTCAATGAGATGCTCCAAACCGCAAAGT
CCTCAACCGAGAAAGGACTAACTGTCAACGAAAAGTTCGTCCTTCACCTC
TTCCTGGATGCCCTTTCGGACGAGTATGTCATGACAAAGCACAACCTGCG
ACACGCGAAGGAGTTGACGCGGACCAGTGTGCTAAAGGAAGTAATGATCG
AATACAAGGTGATCAAGGACAAGCTGGAGCAGGGGAAAGGAAAAGGGGCG
AAGGGTGCAGAGCAAGCGTACTTCGCCGACGGTGAGGGCCGCAGGGAGCG
GTACTCAGGTAGGAGCCAGGGGCAAGGTCGTGGTCGTGGCGGCGGCGGTG
GCGGAGACTTTAAGTTCCCCGGGCCGGTGCTTTAGGTGTGGACATCATGG
ACATTAAGCGATCGGCTGCACTACCAACGAGAAGGACTTCGTGCCGTGGT
ATGTGCGCTGCGAGGGGTGGGGCCACACCAAAGAAAAGTGCGCGACGGAG
GAGGCCGTCCTAGCGCAAGTGGTGGAGCATGAGAGCGACGTGGACTCCGT
GGAAGACCAGGCGTTTTTTGCCGTGGCAGTCCCCCCGGGCCGAGTGTGGT
ACCGTTGGTGAAGTAGGTCTAGTGGGGGTTGTGGAACAAGGCCAGGCGGT
GTACGTGGCCGACACAGCGGCCACGTGCTCCATGTTCCGATGTGCAGACA
ACTTCGTGAACTACCGTGAGCGTAGCGGTTGGGTGAAGGGGATCGGAGGC
GACAAGGCCCCCGTTCCTCTTCTAGGATACGGAGATGTGACCTTAGTCCT
ACAGACGGAAGATGGTGGAGTACCCGTACCAGTACTGAATGCTGCCCATG
TACCAGAGGCCCCCTACAACCTCCTCTCGCTGTCTTCGTTGGCGGAGGAG
GGCCACACGTATTCGGGGATGAAGGGGGGTCTCACGCTAACCACGAAAGC
CGGGGGGAGGTGTGGTTCCCCCTGACTGGAAAGCTGCTGACCCAACGAGG
CTATCAAATAAAGCCAACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN back to topCoding sequence (CDS) from alignment at Scaffold_467:229749..231665+ >EsuBft942_24a-0001 ID=EsuBft942_24a-0001|Name=EsuBft942_24a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=576bp|location=Sequence derived from alignment at Scaffold_467:229749..231665+ (Ectocarpus subulatus male Bft15b) ATGTCAGGTAGCAAAGATGGGGGTGACTCCTCCAGCGACTCTGCGGCGGA AGACAGAAAGAGGTCAAGAGAAGAGCTCGTGGCCCTGAGGACGCAAGTTA ACTCGCTGACGGATCAGACGGGCCAGCTAATGTCGCTAGTGGAAGATACC ATGAAGACAAGCAATAAGGAGGAGCCAGCTGGCACCATGGAGGGTGCCGC TGATCTCGGCGATGCTAGGGAGAGCGCCGCCGCGGAGTCCACGAACGCCG AAGTAGGGGCACCGTGGACCGGGAGTGCGCAGGACGGGAGGTACCTGCGC GAACCTGTTCGAGAGTGTGGCCCATCAGGGCGACACAGCGGCGAAGCAGG GGGCTTTGTCCCCCAAGAGGTGAGAGTAGCCGCTGCTCACCACCAAGATT ATAGTAGTGCCATGGAAGATGGTGGTGCTGCTGTTGGCTTTGGATACGGA GCCACAACCCCAGCGACGGGGTACCAAAGTGTGCGGTACACTTCTCCTCC GTTCAGCGGGAAATCGAAAGATTTCAACGAATGGCTAAATGATTTCCGCA TTGCAGCTAATGGCGCAAACATGTAG back to top
|