EsuBft942_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft942_23a-0001
Unique Name	EsuBft942_23a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_467	contig	Scaffold_467:218764..222264 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7425.NV18849-PA
ProteomeId	EsuBft942_23
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	5
Max annot lvl	33208\|Metazoa
Length	1695
Evalue	3.36e-32
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38DPC@33154\|Opisthokonta,3BGB6@33208\|Metazoa,3D5G4@33213\|Bilateria,41ZUZ@6656\|Arthropoda,3SKEY@50557\|Insecta
Date last modified	2016-06-13
Date creation	2016-06-13
Description	Reverse transcriptase (RNA-dependent DNA polymerase)
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0043170
GO	0003824
GO	0044238

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft942_23a	EsuBft942_23a	Ectocarpus subulatus male Bft15b	gene	Scaffold_467 218764..222264 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_23a-0001	EsuBft942_23	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_467 218764..222264 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_23a-0001-exon	EsuBft942_23a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 218764..219186 +
EsuBft942_23a-0001-exon	agat-exon-44897	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 219248..219816 +
EsuBft942_23a-0001-exon	agat-exon-44895	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 220166..220179 +
EsuBft942_23a-0001-exon	agat-exon-44894	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 220314..220395 +
EsuBft942_23a-0001-exon	agat-exon-44896	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 221658..222264 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_23a-0001-cds	EsuBft942_23a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_467 218764..219186 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_467:218764..222264+
coding sequence from alignment at Scaffold_467:218764..222264+

spliced messenger RNA

>EsuBft942_23a-0001 ID=EsuBft942_23a-0001|Name=EsuBft942_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1695bp|location=Sequence derived from alignment at Scaffold_467:218764..222264+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTCTCACGCCCCATGCTCTGCTCGGCGAGGGGGGAGATCCGCGG
ATCCGAGGACGCACGAGAGCGGANTGCTGCCTCCGCCGGACCGTCGCCGT
CGCCGTCGCTCCCGGACTGGTCGTCCTCATCCATTGAGGCTGAGCAGTCC
CCGCCGCAACCGCACCAAGACCGGCGGACCACACAGTCGGCGACCGCACC
GGGGTACGCACCTCTCACGCCCCATGCTTCGAGACTGCTCGGCGAGGGGG
GAGATCCGCGGATCCGAGGACGCACGAGAGCGGAAGCGCGCACCATCGCC
CAGCAACAGCTTTCTGCCCTATCGGTGGACCGGCAGTTGCCATCACTGCA
GGACGATGCCGTCACCACACCTCTGCCTCCGACCGAGATCACCATGGGGA
TGCTGGCTCAAGCAAACGAAGACGATTGGAAGGGGGTGGCGAGAAGGGGG
GCGGAGGCGAGCAGCTCGCGAGGAGTGAGGGGGTGGGNACCTCTGCCTCC
GACCGAGATCACCATGGGGATGCTGGCTCAAGCAAACGAAGACGTCCTCC
TCTCCATGCTGAATGCTCGGCGAGTCATGAACGGCAAGACAATGCTCCGG
CCAGGATTGGAGGGGGGTGGCGAGAAGGGGGGCGGAGGCGAGCAGCTCGC
GAGGAGTGAGGGGGTGGGAGAGAGCACGGGAAAGCTTCCGGAGGTGGACA
CCGGCGAGGAGGGACGCATGGGGAATGGTTGGTCGATCGGTCCGTCTGAG
CGGGGCGTTCCGCTCGGACTTGTGGCGCGTCTTGCGACGCGCGACGACCT
CGACTCAGCTGTGCGCGAGATGGAGCCGCCTCTCTTGCGACTCGACATGC
CGCGCTGCCACGCCAAGGACCTCCGAGTACCCCAGACTTTCAAAGAGGCA
AAGCAGTGCGAGCACAGCGAGCAGTTCATGGATGCGGCCAAGCGTGAGGT
GTTTGGATTGCTAGAAGGAGACGCGTTTAAGTTTGTTGGACCGCATCTAG
AGAGTGTGGGGACGAAGGAAAGGTGTGATCAATTCGGCAAGGACCTGGGA
GAGTACGTGCCAGCAAAGTCTCTAGGGGAGTTGAAGTGGCCGGATATCGC
GAATTCGGTGAGAGCAGTGGTGAGGTACTGTAGTGCACCGAAGTTGATCA
ACTGGAAGGCTGCACTTCGCATTTTAGGATATGCAGTTAGGACTAGTTCT
TTGGGGATTTCTTTTCAGAGGAGGACGGTTTCGGGATTTTCTTTGATTGC
GTTTGTCGACGCGGACTACGCTTCCCGTGCGGCAGACCGTAGGTCGGTTT
CGGGAGGGGTAGTGATGTGTGCAGGAGGGGCGATTGCATGGTTCTCCAAG
ACTCAGGAATGTGTGACTTTGTCTACCACGCAGGCAGAATACGTGGCGAT
GGCGGACATGGGGAAGGTGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCA
TGTTGCCTAAGGAGTTGCGGCCGTGCAGTCCACTGCATGAAGATAACGAA
GGGGCTATCCAGATCGCAAAACACCCGATCTCGAATTCCAACTCGAAGCA
CATCGACGTGCGGCATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGG
TAGATATCATCCACGGAGCGTCGAAGTATCAGCATGCTGACTTCCTCACG
AAGGCGCTACCTGAGAGAGAGTTGTTTCCCACCGGGACTACGTGA

protein sequence of EsuBft942_23a-0001

>EsuBft942_23 ID=EsuBft942_23|Name=EsuBft942_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=564bp
MHLSRPMLCSARGEIRGSEDARERXAASAGPSPSPSLPDWSSSSIEAEQS
PPQPHQDRRTTQSATAPGYAPLTPHASRLLGEGGDPRIRGRTRAEARTIA
QQQLSALSVDRQLPSLQDDAVTTPLPPTEITMGMLAQANEDDWKGVARRG
AEASSSRGVRGWXPLPPTEITMGMLAQANEDVLLSMLNARRVMNGKTMLR
PGLEGGGEKGGGGEQLARSEGVGESTGKLPEVDTGEEGRMGNGWSIGPSE
RGVPLGLVARLATRDDLDSAVREMEPPLLRLDMPRCHAKDLRVPQTFKEA
KQCEHSEQFMDAAKREVFGLLEGDAFKFVGPHLESVGTKERCDQFGKDLG
EYVPAKSLGELKWPDIANSVRAVVRYCSAPKLINWKAALRILGYAVRTSS
LGISFQRRTVSGFSLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSK
TQECVTLSTTQAEYVAMADMGKVILFLRQVWRFMLPKELRPCSPLHEDNE
GAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVDIIHGASKYQHADFLT
KALPERELFPTGTT

mRNA from alignment at Scaffold_467:218764..222264+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft942_23a-0001 ID=EsuBft942_23a-0001|Name=EsuBft942_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3501bp|location=Sequence derived from alignment at Scaffold_467:218764..222264+ (Ectocarpus subulatus male Bft15b)
ATGCACCTCTCACGCCCCATGCTCTGCTCGGCGAGGGGGGAGATCCGCGG
ATCCGAGGACGCACGAGAGCGGANTGCTGCCTCCGCCGGACCGTCGCCGT
CGCCGTCGCTCCCGGACTGGTCGTCCTCATCCATTGAGGCTGAGCAGTCC
CCGCCGCAACCGCACCAAGACCGGCGGACCACACAGTCGGCGACCGCACC
GGGGTACGCACCTCTCACGCCCCATGCTTCGAGACTGCTCGGCGAGGGGG
GAGATCCGCGGATCCGAGGACGCACGAGAGCGGAAGCGCGCACCATCGCC
CAGCAACAGCTTTCTGCCCTATCGGTGGACCGGCAGTTGCCATCACTGCA
GGACGATGCCGTCACCACACCTCTGCCTCCGACCGAGATCACCATGGGGA
TGCTGGCTCAAGCAAACGAAGACGTCCTCCTCTCCATGCTGAATGCTCGG
CGAGTCATGAACGGCAAGACCATGCTCCGGCCAGGATTGGAAGGGGGTGG
CGAGAAGGGGGGCGGAGGCGAGCAGCTCGCGAGGAGTGAGGGGGTGGGNA
CCTCTGCCTCCGACCGAGATCACCATGGGGATGCTGGCTCAAGCAAACGA
AGACGTCCTCCTCTCCATGCTGAATGCTCGGCGAGTCATGAACGGCAAGA
CAATGCTCCGGCCAGGATTGGAGGGGGGTGGCGAGAAGGGGGGCGGAGGC
GAGCAGCTCGCGAGGAGTGAGGGGGTGGGAGAGAGCACGGGAAAGCTTCC
GGAGGTGGACACCGGCGAGGAGGGACGCATGGGGAATGGTTGGTCGATCG
GTCCGTCTGAGCGGGGCGTTCCGCTCGGACTTGTGGCGCGTCTTGCGACG
CGCGACGACCTCGACTCAGCTGTGCGCGAGATGGAGCCGCCTCTCTTGCG
ACTCGACATGCCGCGCTGCCACGCCAAGGACCTCCGAGTACCCCAGACTT
TCAAAGAGGCAAAGCAGTGCGAGCACAGCGAGCAGTTCATGGATGCGGCC
AAGCGTGAGGTGTTTGGATTGCTAGAAGGAGACGCGTTTAAGTTTGTTGG
ACCGTAAGCAGCGAACAGGCAATTGCATCAAGTCGAAGTTGATTTTTGAT
TGGAAGGTAGATGCGTTCGGCTTTCCTACGAAGGCCAAGGCTAGGCTTGT
TGCGAGAGGAGACATGCAGAAGGAGTACATTGACTTTGTGATTTTTATGC
ACCTACTGTAGCTTCAGCTAGCGTCCGTATGTTGGCAGCTTTGGCGTGTG
AGCTCGACTTGGAGTTGTGTCACTTCGATATCGACCAGGCTTTTGTGAGG
GCCCCTCTTAAGGAAGATATTTTCATGCGGCTGCCGGAAGGATGTGGTGC
GTTGTCGGGGAAGATAGTTCAGTTGAACAAGAGCCTTAATGGTTTGAGGC
AGGCATCTAGAGAGTGGTACGCGTAACTGAAGAAGTGCCTTTTGTCTCTG
GGGTTCGAGCAGTGCATGGCTGATTCGTGTGTTGTTTGTTGAGTCGAAAG
GGGGGAAGTAGTATTGCTTCTCGTAGTACACGTAGACGAGATTTATGCAG
TGGGGACGAAGGAAAGGTGTGATCAATTCGGCAAGGACCTGGGAGAGTAC
GTGCCAGCAAAGTCTCTAGGGGAGTTGAAGTGGTACTCCGGTTGCTAGAG
GGACAGAGAGGCAGGCAGGCTGGCAATTTCACAGCAGACATACACCGAAG
AGCTGGGAGAGAGATGTGGTGTCGGGTGGGGGGGGGGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGAGCGTAGAGTACCCTTTT
CGCGCGCTGGTCGGTTCGCTGTTGTGGATTGCCTTGTTGACTAGGCCGGA
TATCGCGAATTCGGTGAGAGCAGTGGTGAGGTACTGTAGTGCACCGAAGT
TGATCAACTGGAAGGCTGCACTTCGCATTTTAGGATATGCAGTTAGGACT
AGTTCTTTGGGGATTTCTTTTCAGAGGAGGACGGTTTCGGGATTTTCTTT
GATTGCGTTTGTCGACGCGGACTACGCTTCCCGTGCGGCAGACCGTAGGT
CGGTTTCGGGAGGGGTAGTGATGTGTGCAGGAGGGGCGATTGCATGGTTC
TCCAAGACTCAGGAATGTGTGACTTTGTCTACCACGCAGGCAGAATACGT
GGCGATGGCGGACATGGGGAAGGTGATTTTGTTTTTGAGGCAGGTTTGGC
GTTTCATGTTGCCTAAGGAGTTGCGGCCGTGCAGTCCACTGCATGAAGAT
AACGAAGGGGCTATCCAGATCGCAAAACACCCGATCTCGAATTCCAACTC
GAAGCACATCGACGTGCGGCATCACTTCCTCAGGCAGCTCGTAGATGAGA
AGGAGGTAGATATCATCCACGGAGCGTCGAAGTATCAGCATGCTGACTTC
CTCACGAAGGCGCTACCTGAGAGAGAGTTGTTTCCCACCGGGACTACGTG
A

Coding sequence (CDS) from alignment at Scaffold_467:218764..222264+

>EsuBft942_23a-0001 ID=EsuBft942_23a-0001|Name=EsuBft942_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1695bp|location=Sequence derived from alignment at Scaffold_467:218764..222264+ (Ectocarpus subulatus male Bft15b)
ATGCACCTCTCACGCCCCATGCTCTGCTCGGCGAGGGGGGAGATCCGCGG
ATCCGAGGACGCACGAGAGCGGANTGCTGCCTCCGCCGGACCGTCGCCGT
CGCCGTCGCTCCCGGACTGGTCGTCCTCATCCATTGAGGCTGAGCAGTCC
CCGCCGCAACCGCACCAAGACCGGCGGACCACACAGTCGGCGACCGCACC
GGGGTACGCACCTCTCACGCCCCATGCTTCGAGACTGCTCGGCGAGGGGG
GAGATCCGCGGATCCGAGGACGCACGAGAGCGGAAGCGCGCACCATCGCC
CAGCAACAGCTTTCTGCCCTATCGGTGGACCGGCAGTTGCCATCACTGCA
GGACGATGCCGTCACCACACCTCTGCCTCCGACCGAGATCACCATGGGGA
TGCTGGCTCAAGCAAACGAAGACGATTGGAAGGGGGTGGCGAGAAGGGGG
GCGGAGGCGAGCAGCTCGCGAGGAGTGAGGGGGTGGGNACCTCTGCCTCC
GACCGAGATCACCATGGGGATGCTGGCTCAAGCAAACGAAGACGTCCTCC
TCTCCATGCTGAATGCTCGGCGAGTCATGAACGGCAAGACAATGCTCCGG
CCAGGATTGGAGGGGGGTGGCGAGAAGGGGGGCGGAGGCGAGCAGCTCGC
GAGGAGTGAGGGGGTGGGAGAGAGCACGGGAAAGCTTCCGGAGGTGGACA
CCGGCGAGGAGGGACGCATGGGGAATGGTTGGTCGATCGGTCCGTCTGAG
CGGGGCGTTCCGCTCGGACTTGTGGCGCGTCTTGCGACGCGCGACGACCT
CGACTCAGCTGTGCGCGAGATGGAGCCGCCTCTCTTGCGACTCGACATGC
CGCGCTGCCACGCCAAGGACCTCCGAGTACCCCAGACTTTCAAAGAGGCA
AAGCAGTGCGAGCACAGCGAGCAGTTCATGGATGCGGCCAAGCGTGAGGT
GTTTGGATTGCTAGAAGGAGACGCGTTTAAGTTTGTTGGACCGCATCTAG
AGAGTGTGGGGACGAAGGAAAGGTGTGATCAATTCGGCAAGGACCTGGGA
GAGTACGTGCCAGCAAAGTCTCTAGGGGAGTTGAAGTGGCCGGATATCGC
GAATTCGGTGAGAGCAGTGGTGAGGTACTGTAGTGCACCGAAGTTGATCA
ACTGGAAGGCTGCACTTCGCATTTTAGGATATGCAGTTAGGACTAGTTCT
TTGGGGATTTCTTTTCAGAGGAGGACGGTTTCGGGATTTTCTTTGATTGC
GTTTGTCGACGCGGACTACGCTTCCCGTGCGGCAGACCGTAGGTCGGTTT
CGGGAGGGGTAGTGATGTGTGCAGGAGGGGCGATTGCATGGTTCTCCAAG
ACTCAGGAATGTGTGACTTTGTCTACCACGCAGGCAGAATACGTGGCGAT
GGCGGACATGGGGAAGGTGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCA
TGTTGCCTAAGGAGTTGCGGCCGTGCAGTCCACTGCATGAAGATAACGAA
GGGGCTATCCAGATCGCAAAACACCCGATCTCGAATTCCAACTCGAAGCA
CATCGACGTGCGGCATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGG
TAGATATCATCCACGGAGCGTCGAAGTATCAGCATGCTGACTTCCTCACG
AAGGCGCTACCTGAGAGAGAGTTGTTTCCCACCGGGACTACGTGA