EsuBft942_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft942_22a-0001
Unique Name	EsuBft942_22a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_467	contig	Scaffold_467:216350..218303 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft942_22
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	179
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft942_22a	EsuBft942_22a	Ectocarpus subulatus male Bft15b	gene	Scaffold_467 216350..218303 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_22a-0001	EsuBft942_22	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_467 216653..216874 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_22a-0001-exon	EsuBft942_22a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 216350..217886 +
EsuBft942_22a-0001-exon	agat-exon-44893	Ectocarpus subulatus male Bft15b	exon	Scaffold_467 218045..218303 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_22a-0001-exon	agat-five_prime_utr-15166	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_467 216350..216652 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_22a-0001-cds	EsuBft942_22a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_467 216653..216874 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft942_22a-0001-exon	agat-three_prime_utr-23310	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_467 216875..217886 +
EsuBft942_22a-0001-exon	agat-three_prime_utr-23311	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_467 218045..218303 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_467:216350..218303+
coding sequence from alignment at Scaffold_467:216350..218303+

spliced messenger RNA

>EsuBft942_22a-0001 ID=EsuBft942_22a-0001|Name=EsuBft942_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1796bp|location=Sequence derived from alignment at Scaffold_467:216350..218303+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCAATGTACAATGTACGCCACTTGGGCCCGGATGAACGATTTATTCAGAT
TGGAGACTCGGCTCTCATCAAGGTTGCCGCTGTAGGGAGTGTGGACCTTA
GGTTCCACCAAATCGGAGCCGACGTGAAACAGGAGGACTTGGATGTCACT
GTGCCGGAAGTTTTGTTTGTACGCGGGTGTGGTCTCAACCTTTTCTCGGT
ATGGAAGGTGTCTCACAAGCATTAGGTCCGTATCAACCCAACGGTAAGCA
AATGATGCACGGAAAACTGCGTTATATTCGTGGCGTTTCGAGCGATTCCC
TTTTTGCAACCCGCCTTCCCCACAATTCCCTGCCTTCTATGGACGTTGCG
AATGAGAAAGCCCGTGAGAGTTCTTTTTCCTTTGTGGCATCGGCTCTTAC
AGCCGCGATGGATTCCGATCTAGAACCCCCCCGTGTGACGAATGCTGTAG
CGGAATACTCGGCGAAGATGATTGATGTGTGGGGGAGTGAAGAGTGTGAA
CGCGCCATGGCTGTGTTGGGTCCGGGGAAGACACCTTTCAATGTCGGCAA
TGCACAAAAGGTTATGGATATTAACACGTTCCACAACCGTGCCGGCCACT
TGTCCAAACCCATTTTGAGACTGTCCGCGAAGCAGCACGGGATTACCCTT
ACGGGCACGATGGACAGCTGTCGATGGTGCTTGCCGGCGCGAGGGACGAG
GGCGCCGGTGCCGAAGCAGGGAGGCGGGTACCGTGGCAAGAGGGCGCCGA
ACGACGTGTTCCACATCGACCTCTGCCCCCTTACACGGCGACGATCGGTG
GCAACCACTATATGCTCTTCGGTGTGGACGCCGCCACGGGATGGATGGTC
TGCTACGCCATGCGGCGTAAGTCGGAGGGGCTAGCGGTCGTCAAGCGCAT
CGTCGTGGATGCCGCACACAAGGCTGGTACCGCGATCAAGTGCATCCACT
GGAACTGCGATGCCCTCTTGACCAGCAGCAACTTCAAGTAGTTCTGTGCC
AGCATGGGGATCGCGCTCGAGTACTCCCCTCCCAGCGTGCAGCAGTACAA
CCGCGTTGTCGAGAGCGCCATCCAGAGGGGCCTCAAGGTGGCCAAGGCAT
CCCGCCGGGCCGCCCAGGAGCTGCTTGGCCTCGCAGGATTTTCGTGTGTC
CGTGGGCTGAGTGTTCGTGGCGATGAGCTCTGGGCGGAGTCCGCAAAAGA
CGCCGCGCAGAAGCTGAACCAGTCAGCATCTCCTTGGCATCTCCTTGGGT
GCGTCGCCGCAGGAACTCTACACCGGCAAGGGAGGCCCTTTTCGCTTGAT
CCCGTTCTTCCAGTACGGTTTCATGTGGGAGCGGCCGGCAACGAAAATGG
ACGACAGGGTCGTGCCGTGCTTTTTCCTCAACGCCGGGGACAACCACGCC
GACGTCACCATGAAGGTGCTCAAGGAGAGGACCGGCCACGTGTGCTACAC
CTCGAATGTAGCGTGGGCGGCGCTCCCGCCGTCGGGGGGGGGCGGG

protein sequence of EsuBft942_22a-0001

>EsuBft942_22 ID=EsuBft942_22|Name=EsuBft942_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=73bp
MYNVRHLGPDERFIQIGDSALIKVAAVGSVDLRFHQIGADVKQEDLDVTV
PEVLFVRGCGLNLFSVWKVSHKH

mRNA from alignment at Scaffold_467:216350..218303+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft942_22a-0001 ID=EsuBft942_22a-0001|Name=EsuBft942_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1954bp|location=Sequence derived from alignment at Scaffold_467:216350..218303+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCAATGTACAATGTACGCCACTTGGGCCCGGATGAACGATTTATTCAGAT
TGGAGACTCGGCTCTCATCAAGGTTGCCGCTGTAGGGAGTGTGGACCTTA
GGTTCCACCAAATCGGAGCCGACGTGAAACAGGAGGACTTGGATGTCACT
GTGCCGGAAGTTTTGTTTGTACGCGGGTGTGGTCTCAACCTTTTCTCGGT
ATGGAAGGTGTCTCACAAGCATTAGGTCCGTATCAACCCAACGGTAAGCA
AATGATGCACGGAAAACTGCGTTATATTCGTGGCGTTTCGAGCGATTCCC
TTTTTGCAACCCGCCTTCCCCACAATTCCCTGCCTTCTATGGACGTTGCG
AATGAGAAAGCCCGTGAGAGTTCTTTTTCCTTTGTGGCATCGGCTCTTAC
AGCCGCGATGGATTCCGATCTAGAACCCCCCCGTGTGACGAATGCTGTAG
CGGAATACTCGGCGAAGATGATTGATGTGTGGGGGAGTGAAGAGTGTGAA
CGCGCCATGGCTGTGTTGGGTCCGGGGAAGACACCTTTCAATGTCGGCAA
TGCACAAAAGGTTATGGATATTAACACGTTCCACAACCGTGCCGGCCACT
TGTCCAAACCCATTTTGAGACTGTCCGCGAAGCAGCACGGGATTACCCTT
ACGGGCACGATGGACAGCTGTCGATGGTGCTTGCCGGCGCGAGGGACGAG
GGCGCCGGTGCCGAAGCAGGGAGGCGGGTACCGTGGCAAGAGGGCGCCGA
ACGACGTGTTCCACATCGACCTCTGCCCCCTTACACGGCGACGATCGGTG
GCAACCACTATATGCTCTTCGGTGTGGACGCCGCCACGGGATGGATGGTC
TGCTACGCCATGCGGCGTAAGTCGGAGGGGCTAGCGGTCGTCAAGCGCAT
CGTCGTGGATGCCGCACACAAGGCTGGTACCGCGATCAAGTGCATCCACT
GGAACTGCGATGCCCTCTTGACCAGCAGCAACTTCAAGTAGTTCTGTGCC
AGCATGGGGATCGCGCTCGAGTACTCCCCTCCCAGCGTGCAGCAGTACAA
CCGCGTTGTCGAGAGCGCCATCCAGAGGGGCCTCAAGGTGGCCAAGGCAT
CCCGCCGGGCCGCCCAGGAGCTGCTTGGCCTCGCAGGATTTTCGTGTGTC
CGTGGGCTGAGTGTTCGTGGCGATGAGCTCTGGGCGGAGTCCGCAAAAGA
CGCCGCGCAGAAGCTGAACCAGTCAGCATCTCCTTGGGTGNTGCAATACT
TCACCAACCCCCTCCGCGGGGACTCTATCCACGCCCCAGCATCTACCCNT
CGCAGGATTTTCGTGTGTCCGTGGGCTGAGTGTTCGTGGCGATGAGCTCT
GGGCGGAGTCCGCAAAAGACGCCGCGCAGAAGCTGAACCAGTCAGCATCT
CCTTGGGTGCGTCGCCGCAGGAACTCTACACCGGCAAGGGAGGCCCTTTT
CGCTTGATCCCGTTCTTCCAGTACGGTTTCATGTGGGAGCGGCCGGCAAC
GAAAATGGACGACAGGGTCGTGCCGTGCTTTTTCCTCAACGCCGGGGACA
ACCACGCCGACGTCACCATGAAGGTGCTCAAGGAGAGGACCGGCCACGTG
TGCTACACCTCGAATGTAGCGTGGGCGGCGCTCCCGCCGTCGGGGGGGGG
CGGG

Coding sequence (CDS) from alignment at Scaffold_467:216350..218303+

>EsuBft942_22a-0001 ID=EsuBft942_22a-0001|Name=EsuBft942_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=222bp|location=Sequence derived from alignment at Scaffold_467:216350..218303+ (Ectocarpus subulatus male Bft15b)
ATGTACAATGTACGCCACTTGGGCCCGGATGAACGATTTATTCAGATTGG
AGACTCGGCTCTCATCAAGGTTGCCGCTGTAGGGAGTGTGGACCTTAGGT
TCCACCAAATCGGAGCCGACGTGAAACAGGAGGACTTGGATGTCACTGTG
CCGGAAGTTTTGTTTGTACGCGGGTGTGGTCTCAACCTTTTCTCGGTATG
GAAGGTGTCTCACAAGCATTAG