EsuBft942_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft942_16a-0001
Unique NameEsuBft942_16a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_467contigScaffold_467:184521..184935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXD3
ProteomeIdEsuBft942_16
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length41
Hectar predicted targeting categoryother localisation
Evalue2.98e-26
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred namePOGK
KEGG koko:K09228
DescriptionDNA binding
COG categoryCH
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft942_16aEsuBft942_16aEctocarpus subulatus male Bft15bgeneScaffold_467 184521..184935 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_16a-0001-exonEsuBft942_16a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_467 184521..184935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_16a-0001-cdsEsuBft942_16a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_467 184521..184910 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_16a-0001-exonagat-five_prime_utr-15160Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_467 184911..184935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft942_16a-0001EsuBft942_16Ectocarpus subulatus male Bft15bpolypeptideScaffold_467 184521..184910 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft942_16a-0001 ID=EsuBft942_16a-0001|Name=EsuBft942_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=415bp|location=Sequence derived from alignment at Scaffold_467:184521..184935- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCGCGGTTGTGGTCATCGGGAGGTGATGAACAAGCTGCTCGAGCTGAAGC
CTGACGCCGTTGGCGGGATGCCGGCGAACGCGAAACCGGAGGAGGCGCTG
GCTTTCAAGGTCAAACTCAACTCCTGGTACCAACGGTTCCGCAAGCGGAA
TGGGCTCAGCATTCGCCGGCGTACCAACGTGGGCCAGAAACTGCCGAAGG
GGTACGAGGGTATGGCGTGGGCGACGGTGATGAAGCTGCGCGAGGCTCTC
GTAAAGCGCGCCGGTGAGATCTGCGCTCGGCGCCACCCGCCGGCACCTGA
CGAGAGCCCTATCCAAGGAGAGGATCTGACTTCCGAGCAGCTGGCGTCTG
TGGAGGCGGAGGTTTTCGAGGAACTCGGCAACATGGACCAGACGCCAGTC
CAGGACGATATGTAG
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protein sequence of EsuBft942_16a-0001

>EsuBft942_16 ID=EsuBft942_16|Name=EsuBft942_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=129bp
MNKLLELKPDAVGGMPANAKPEEALAFKVKLNSWYQRFRKRNGLSIRRRT
NVGQKLPKGYEGMAWATVMKLREALVKRAGEICARRHPPAPDESPIQGED
LTSEQLASVEAEVFEELGNMDQTPVQDDM
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mRNA from alignment at Scaffold_467:184521..184935-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft942_16a-0001 ID=EsuBft942_16a-0001|Name=EsuBft942_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=415bp|location=Sequence derived from alignment at Scaffold_467:184521..184935- (Ectocarpus subulatus male Bft15b)
CCGCGGTTGTGGTCATCGGGAGGTGATGAACAAGCTGCTCGAGCTGAAGC
CTGACGCCGTTGGCGGGATGCCGGCGAACGCGAAACCGGAGGAGGCGCTG
GCTTTCAAGGTCAAACTCAACTCCTGGTACCAACGGTTCCGCAAGCGGAA
TGGGCTCAGCATTCGCCGGCGTACCAACGTGGGCCAGAAACTGCCGAAGG
GGTACGAGGGTATGGCGTGGGCGACGGTGATGAAGCTGCGCGAGGCTCTC
GTAAAGCGCGCCGGTGAGATCTGCGCTCGGCGCCACCCGCCGGCACCTGA
CGAGAGCCCTATCCAAGGAGAGGATCTGACTTCCGAGCAGCTGGCGTCTG
TGGAGGCGGAGGTTTTCGAGGAACTCGGCAACATGGACCAGACGCCAGTC
CAGGACGATATGTAG
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Coding sequence (CDS) from alignment at Scaffold_467:184521..184935-

>EsuBft942_16a-0001 ID=EsuBft942_16a-0001|Name=EsuBft942_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=390bp|location=Sequence derived from alignment at Scaffold_467:184521..184935- (Ectocarpus subulatus male Bft15b)
ATGAACAAGCTGCTCGAGCTGAAGCCTGACGCCGTTGGCGGGATGCCGGC
GAACGCGAAACCGGAGGAGGCGCTGGCTTTCAAGGTCAAACTCAACTCCT
GGTACCAACGGTTCCGCAAGCGGAATGGGCTCAGCATTCGCCGGCGTACC
AACGTGGGCCAGAAACTGCCGAAGGGGTACGAGGGTATGGCGTGGGCGAC
GGTGATGAAGCTGCGCGAGGCTCTCGTAAAGCGCGCCGGTGAGATCTGCG
CTCGGCGCCACCCGCCGGCACCTGACGAGAGCCCTATCCAAGGAGAGGAT
CTGACTTCCGAGCAGCTGGCGTCTGTGGAGGCGGAGGTTTTCGAGGAACT
CGGCAACATGGACCAGACGCCAGTCCAGGACGATATGTAG
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