EsuBft941_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft941_5a-0001
Unique NameEsuBft941_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_427contigScaffold_427:200584..201354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4530.OS11T0656500-01
ProteomeIdEsuBft941_5
Protein domainsIPR012337
Protein domainsIPR001584
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl35493|Streptophyta
Length771
Hectar predicted targeting categoryother localisation
Evalue1.93e-13
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2IR@4447|Liliopsida,3IKX9@38820|Poales
Date last modified2016-06-14
Date creation2016-06-14
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003676
GO0003824
GO0015074
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft941_5aEsuBft941_5aEctocarpus subulatus male Bft15bgeneScaffold_427 200584..201354 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft941_5a-0001-exonEsuBft941_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_427 200584..201354 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft941_5a-0001-exonagat-three_prime_utr-23301Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_427 200584..200682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft941_5a-0001-cdsEsuBft941_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_427 200683..201315 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft941_5a-0001-exonagat-five_prime_utr-15152Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_427 201316..201354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft941_5a-0001EsuBft941_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_427 200683..201315 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft941_5a-0001 ID=EsuBft941_5a-0001|Name=EsuBft941_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=771bp|location=Sequence derived from alignment at Scaffold_427:200584..201354- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GGTCCTTCCCCATTTTCGGTAGGAAAATCCACGCCCACCATGGATATTAA
TTTGTTCCATGCCTCCACCGGCCATGTAAACGAATTCTTGATGCGTGAAA
CGGCCAAGCAGCAGGGCGTACGACTGGTGAGGGAGATGCAGCCGTGTGTG
GGCTGCGTGGAGGCCAAGGACGGGCGGGCACCGGTGCCGCGGCGTGGCAC
CCACGCGGCGGTACCGTTCGGCAAAGTCCACGTCGACCTCACGGGCCCGT
CCTCTGACGCGCTGGACGGCTCCCGGTACCTGATCATGTTCGTGGACAGC
GCATCGCGGTGGCAACGGGGGTACGGGATGCGGGCCAAGAGCTACACCCT
GAAGTTCGTGCAGTGGTTCCTCGCCGACATGAACGGCATCGGCACTCCGG
GGTGTTTCCGCATGGACAACGGCGGCGAGTTCACCGGCTCCGCGTTTACA
TCGTTCTGCTGCGCTGCTGGCATTTGGCGCGAGTACACCGCCCCCGACGC
CTCCAAGCAAAACGCGGTGGTCGAGAGCGCCGTATGGCTCGCCATGAAGG
GGGGTCACGCCGCGCGCCGCCACATCCTCGCCATGGGCCACGTCGACCTC
TCTTCCATCCCCAACATCGGCGTCAACGGACATCGCCTGTGGCTCGCGTC
GGCGCTGTGGGCATCCGCCTGATTCAACCGCTCCGCAACGAAGGCCAACC
TGGGCTGGATGTCGCCGTTCGAGACGTTCTTCGGCCGGAAGCCGCCCCTC
ACCGTCGTCTCTTTTTCCAGG
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protein sequence of EsuBft941_5a-0001

>EsuBft941_5 ID=EsuBft941_5|Name=EsuBft941_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=210bp
MDINLFHASTGHVNEFLMRETAKQQGVRLVREMQPCVGCVEAKDGRAPVP
RRGTHAAVPFGKVHVDLTGPSSDALDGSRYLIMFVDSASRWQRGYGMRAK
SYTLKFVQWFLADMNGIGTPGCFRMDNGGEFTGSAFTSFCCAAGIWREYT
APDASKQNAVVESAVWLAMKGGHAARRHILAMGHVDLSSIPNIGVNGHRL
WLASALWASA
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mRNA from alignment at Scaffold_427:200584..201354-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft941_5a-0001 ID=EsuBft941_5a-0001|Name=EsuBft941_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=771bp|location=Sequence derived from alignment at Scaffold_427:200584..201354- (Ectocarpus subulatus male Bft15b)
GGTCCTTCCCCATTTTCGGTAGGAAAATCCACGCCCACCATGGATATTAA
TTTGTTCCATGCCTCCACCGGCCATGTAAACGAATTCTTGATGCGTGAAA
CGGCCAAGCAGCAGGGCGTACGACTGGTGAGGGAGATGCAGCCGTGTGTG
GGCTGCGTGGAGGCCAAGGACGGGCGGGCACCGGTGCCGCGGCGTGGCAC
CCACGCGGCGGTACCGTTCGGCAAAGTCCACGTCGACCTCACGGGCCCGT
CCTCTGACGCGCTGGACGGCTCCCGGTACCTGATCATGTTCGTGGACAGC
GCATCGCGGTGGCAACGGGGGTACGGGATGCGGGCCAAGAGCTACACCCT
GAAGTTCGTGCAGTGGTTCCTCGCCGACATGAACGGCATCGGCACTCCGG
GGTGTTTCCGCATGGACAACGGCGGCGAGTTCACCGGCTCCGCGTTTACA
TCGTTCTGCTGCGCTGCTGGCATTTGGCGCGAGTACACCGCCCCCGACGC
CTCCAAGCAAAACGCGGTGGTCGAGAGCGCCGTATGGCTCGCCATGAAGG
GGGGTCACGCCGCGCGCCGCCACATCCTCGCCATGGGCCACGTCGACCTC
TCTTCCATCCCCAACATCGGCGTCAACGGACATCGCCTGTGGCTCGCGTC
GGCGCTGTGGGCATCCGCCTGATTCAACCGCTCCGCAACGAAGGCCAACC
TGGGCTGGATGTCGCCGTTCGAGACGTTCTTCGGCCGGAAGCCGCCCCTC
ACCGTCGTCTCTTTTTCCAGG
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Coding sequence (CDS) from alignment at Scaffold_427:200584..201354-

>EsuBft941_5a-0001 ID=EsuBft941_5a-0001|Name=EsuBft941_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=633bp|location=Sequence derived from alignment at Scaffold_427:200584..201354- (Ectocarpus subulatus male Bft15b)
ATGGATATTAATTTGTTCCATGCCTCCACCGGCCATGTAAACGAATTCTT
GATGCGTGAAACGGCCAAGCAGCAGGGCGTACGACTGGTGAGGGAGATGC
AGCCGTGTGTGGGCTGCGTGGAGGCCAAGGACGGGCGGGCACCGGTGCCG
CGGCGTGGCACCCACGCGGCGGTACCGTTCGGCAAAGTCCACGTCGACCT
CACGGGCCCGTCCTCTGACGCGCTGGACGGCTCCCGGTACCTGATCATGT
TCGTGGACAGCGCATCGCGGTGGCAACGGGGGTACGGGATGCGGGCCAAG
AGCTACACCCTGAAGTTCGTGCAGTGGTTCCTCGCCGACATGAACGGCAT
CGGCACTCCGGGGTGTTTCCGCATGGACAACGGCGGCGAGTTCACCGGCT
CCGCGTTTACATCGTTCTGCTGCGCTGCTGGCATTTGGCGCGAGTACACC
GCCCCCGACGCCTCCAAGCAAAACGCGGTGGTCGAGAGCGCCGTATGGCT
CGCCATGAAGGGGGGTCACGCCGCGCGCCGCCACATCCTCGCCATGGGCC
ACGTCGACCTCTCTTCCATCCCCAACATCGGCGTCAACGGACATCGCCTG
TGGCTCGCGTCGGCGCTGTGGGCATCCGCCTGA
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