EsuBft940_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft940_4a-0001
Unique NameEsuBft940_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_561contigScaffold_561:186974..189490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHQ4
ProteomeIdEsuBft940_4
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR003425
Protein domainsSignalP-TM
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length109
Hectar predicted targeting categoryother localisation
Evalue1.49e-114
EggNOG OGsCOG0762@1|root,2S21M@2759|Eukaryota
Ec32 ortholog descriptionUncharacterised protein family Ycf19
Ec32 orthologEc-20_002670.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameCCB3
KEGG koko:K02221
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0010190,GO:0016020,GO:0016043,GO:0017004,GO:0022607,GO:0031976,GO:0031984,GO:0034357,GO:0034622,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0065003,GO:0071840
DescriptionYGGT family
COG categoryS
BRITEko00000,ko02044
Cross References
External references for this mRNA
DatabaseAccession
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft940_4aEsuBft940_4aEctocarpus subulatus male Bft15bgeneScaffold_561 186974..189490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft940_4a-0001EsuBft940_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_561 187046..188543 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft940_4a-0001-exonagat-exon-71441Ectocarpus subulatus male Bft15bexonScaffold_561 186974..187237 -
EsuBft940_4a-0001-exonagat-exon-71439Ectocarpus subulatus male Bft15bexonScaffold_561 187736..187910 -
EsuBft940_4a-0001-exonEsuBft940_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_561 188245..188690 -
EsuBft940_4a-0001-exonagat-exon-71440Ectocarpus subulatus male Bft15bexonScaffold_561 189281..189490 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft940_4a-0001-exonagat-three_prime_utr-23292Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_561 186974..187045 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft940_4a-0001-cdsEsuBft940_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_561 187046..187237 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft940_4a-0001-exonagat-five_prime_utr-15146Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_561 188544..188690 -
EsuBft940_4a-0001-exonagat-five_prime_utr-15147Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_561 189281..189490 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft940_4a-0001 ID=EsuBft940_4a-0001|Name=EsuBft940_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1095bp|location=Sequence derived from alignment at Scaffold_561:186974..189490- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTACAGCAGTAGGGCCGGCGTGCCCAGTGCTGCTGATGTGAAACTTCCG
TGTGACGTTCGACCGCGTCTAGGACAGAGAAGAAAACGAGTGTGACCTAC
ACCGAGTGACAGCACGGAAGCAGTAGTCATATTATCAGGTGGCCTTGTGT
CAGCATCTGCAACATGAGCCCGTTGTAGCCTGTAGGCCCCACCTCGTCCC
AGCTGTACACATATACCGCATATTTGCCGCCACCTCTTCCTCTGAAGTGC
CCGTAGCCATATATCAGTGTCACTCCTGAAGTTTTCGTCCACACGAACAG
CTCTTGGATACCCCCCCTCTCCCCCCCTCCCTTCTTGTCTCCCTTTTCCT
AACCGCTATGCTCACGCCTTTCCCAGCCTTCGTAGCCCCACCCTCGTCTT
CCGGTTCTGCATTAACGGCGTTGCGCACGGCTGCGCCTGCAACTACGCTG
ACGAGTCGATCACGCCGAGCGGCTGATGGCTACGGCATGGCGAAGGGCGC
CCGCCACGCGTGGAGTGCTCTAGGAGGTGTTTCAGACGGAGGTGCAGCGA
CGAGCGCTGGAGAGGAGGAGCGAACAGGAATTGCCGCGGAACCGAAGCTG
CAGCCTGCAGTCGGTGAAGAAATGCTGAAATGGAATGATAGGCTAAATAT
CGTGGGCGGCCTAGCGACCGGAGCCACGGTCGTCGCGCTGGCCGCGCTTG
GTGGGTTTCCCGGCCTTGCCGCGGCGGAGGCGCCGGCGTGGGTAGGGCCC
ACGAAGCTTGTTTTGGACCCCACCCTGTTGTTCTTCGAGTTCGCGTTCGT
AGCTCGCATCGTTTTGTCCTGGTACCCTAAGCTGGACCTCAACAGCGCAC
CCCAGAACCTCGTGGCGTGGCCAACGGAGCCCATCCTGAGGCCCACAAGA
GCGATCATCCCCCCCGCGTTCGGCGTGGACATAAGCCCCATCGTGTGGGT
CATGATCTGCTCGCTCGTGCACGAAATATTGTTGGGGCAGCAAGGTATTC
TTAACCTAATGTCCAACAAGTAGAGCAGGTGTTCGGTTGCTTGGGGTTCT
CCCACTTTGGATGGAGAGCTTTCCGCTCCCCTGAGATGCATCATT
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protein sequence of EsuBft940_4a-0001

>EsuBft940_4 ID=EsuBft940_4|Name=EsuBft940_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=221bp
MLTPFPAFVAPPSSSGSALTALRTAAPATTLTSRSRRAADGYGMAKGARH
AWSALGGVSDGGAATSAGEEERTGIAAEPKLQPAVGEEMLKWNDRLNIVG
GLATGATVVALAALGGFPGLAAAEAPAWVGPTKLVLDPTLLFFEFAFVAR
IVLSWYPKLDLNSAPQNLVAWPTEPILRPTRAIIPPAFGVDISPIVWVMI
CSLVHEILLGQQGILNLMSNK
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mRNA from alignment at Scaffold_561:186974..189490-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft940_4a-0001 ID=EsuBft940_4a-0001|Name=EsuBft940_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2517bp|location=Sequence derived from alignment at Scaffold_561:186974..189490- (Ectocarpus subulatus male Bft15b)
GTTACAGCAGTAGGGCCGGCGTGCCCAGTGCTGCTGATGTGAAACTTCCG
TGTGACGTTCGACCGCGTCTAGGACAGAGAAGAAAACGAGTGTGACCTAC
ACCGAGTGACAGCACGGAAGCAGTAGTCATATTATCAGGTGGCCTTGTGT
CAGCATCTGCAACATGAGCCCGTTGTAGCCTGTAGGCCCCACCTCGTCCC
AGCTGTACACGTACGCGGGTGCTCCTATGCTGCAGCTCGGCACCGAACAA
CCCCATGTTGGCATAAAGGCGTTCATTGTTTAGAACATGACCGTGGCACT
GGATGTAAGTTTTTAGATCTCTCCTTTGGATGAGGAAAGAGACTGAGCGC
GAGGTCTTCACCCTCGTAGTACTCTTCCAGCCCAAGTGGGGACGCTTTGT
GCGGACACACTACAGCAGTACTCAAATGGCTAGTTTCACCGCACCGTAGG
CACCCTATGCTCCGCTGTGTGCAACGCACATGAGAACTCTTGGTCTATGA
TGCTTGGATGAGGTGGTGCGCTGTGTAATATGGGTAGTTGCTGTACATCG
CCTGGTACTGGAAACATTTGCTGACTTGACTTCAGTCAAGAATAGTGTAC
GTGTTTTGGAGACAATTTTGATATTTATACTGCTGTAAAGACATGTCACC
CTGTCTGGCAAGGAGCTCAGTGCATAGACTGTAGCCCCTCGACCAATGGC
TGGCAATTATTTTGCGACATTTGTTTGTTTGCGGAGGGACTGGGTACTAG
GAGGCTTAAACGTTATAACTGCTTGTCCCACAGCGGTTGCATCCTGGCAG
ATATACCGCATATTTGCCGCCACCTCTTCCTCTGAAGTGCCCGTAGCCAT
ATATCAGTGTCACTCCTGAAGTTTTCGTCCACACGAACAGCTCTTGGATA
CCCCCCCTCTCCCCCCCTCCCTTCTTGTCTCCCTTTTCCTAACCGCTATG
CTCACGCCTTTCCCAGCCTTCGTAGCCCCACCCTCGTCTTCCGGTTCTGC
ATTAACGGCGTTGCGCACGGCTGCGCCTGCAACTACGCTGACGAGTCGAT
CACGCCGAGCGGCTGATGGCTACGGCATGGCGAAGGGCGCCCGCCACGCG
TGGAGTGCTCTAGGAGGTGTTTCAGACGGAGGTGCAGCGACGAGCGCTGG
AGAGGAGGAGCGAACAGGAATTGCCGCGGAACCGAAGCTGCAGCCTGCAG
TCGGTGAAGAAATGCTGAAATGGAATGATAGGCTAAATATCGTGGGGTAT
GTGTTCGTGAAGAGAGGCCGGGGTGGAAGGCGGAAGAGCTCCTCCTGAGA
TCGAAAGAGAGAGGGGGCATGATAGAGGGGGCAGAGAGAAGACACCTAGC
TACGTGACGTGCGTACCATGCGGAGGAACTGGCAGGATGAATGTGTACGT
TTTTATTGCAAAACATACAACACGGGGCTATTGGAGACATCCAGACATGC
AGCATGGTACACACACCGATTTGGACGGGGCAGATACAACGTTACACCAG
CGAGTTGCTGATATTTCCCTAGCTAACCCGTTTACCTCATGCCATCTTCG
CTACCGCAACTCCGCAGCGTCTACGGTCAGCGGCCTAGCGACCGGAGCCA
CGGTCGTCGCGCTGGCCGCGCTTGGTGGGTTTCCCGGCCTTGCCGCGGCG
GAGGCGCCGGCGTGGGTAGGGCCCACGAAGCTTGTTTTGGACCCCACCCT
GTTGTTCTTCGAGTTCGCGTTCGTAGCTCGCATCGTTTTGTCCTGGTACC
CTAAGGTGAGGGGGGGGGGACAGTCGTGTTGAGTTTTTGCGTGACAGCTG
CAACACTTGCGCGGTGGGTTTTCGCAAGCAAATGCCACGAGTGCATGCCT
GCAAAAGACGGTTGTTATGAAACATGGTGCGCGTTAATTGCACAGGAAGC
ATGTAGGGCTTAGCGACATGTGTTCAAAGTATTCGGTCGAGACGTGAATT
ACACGTTAACGGTGTGTGAAGGAAATCGAATTCACGCGACTGGAGCACCA
GTGTGCGGACGCGGGTGTTTGTTGCTTTTTCATTTAGTCCGCGCTGGTCG
CGCATACAGAAGAGGCGCGTTGAAGGACGCCTGTCTCTAACAGGACACAA
GAACGGCAACGCGCGCTTGGTGGCTGTGTTTGTACATGCAGGGTTGTGCG
GTATGCCTGCACAACTGAAGAATTACTACTGCTGTGCACCTGACTACTTT
CTTGCCTTGGCCCTCCCCTTTTTTCTTCTTCCGACTGCCCTGCATCTATT
TAGCTGGACCTCAACAGCGCACCCCAGAACCTCGTGGCGTGGCCAACGGA
GCCCATCCTGAGGCCCACAAGAGCGATCATCCCCCCCGCGTTCGGCGTGG
ACATAAGCCCCATCGTGTGGGTCATGATCTGCTCGCTCGTGCACGAAATA
TTGTTGGGGCAGCAAGGTATTCTTAACCTAATGTCCAACAAGTAGAGCAG
GTGTTCGGTTGCTTGGGGTTCTCCCACTTTGGATGGAGAGCTTTCCGCTC
CCCTGAGATGCATCATT
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Coding sequence (CDS) from alignment at Scaffold_561:186974..189490-

>EsuBft940_4a-0001 ID=EsuBft940_4a-0001|Name=EsuBft940_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=666bp|location=Sequence derived from alignment at Scaffold_561:186974..189490- (Ectocarpus subulatus male Bft15b)
ATGCTCACGCCTTTCCCAGCCTTCGTAGCCCCACCCTCGTCTTCCGGTTC
TGCATTAACGGCGTTGCGCACGGCTGCGCCTGCAACTACGCTGACGAGTC
GATCACGCCGAGCGGCTGATGGCTACGGCATGGCGAAGGGCGCCCGCCAC
GCGTGGAGTGCTCTAGGAGGTGTTTCAGACGGAGGTGCAGCGACGAGCGC
TGGAGAGGAGGAGCGAACAGGAATTGCCGCGGAACCGAAGCTGCAGCCTG
CAGTCGGTGAAGAAATGCTGAAATGGAATGATAGGCTAAATATCGTGGGC
GGCCTAGCGACCGGAGCCACGGTCGTCGCGCTGGCCGCGCTTGGTGGGTT
TCCCGGCCTTGCCGCGGCGGAGGCGCCGGCGTGGGTAGGGCCCACGAAGC
TTGTTTTGGACCCCACCCTGTTGTTCTTCGAGTTCGCGTTCGTAGCTCGC
ATCGTTTTGTCCTGGTACCCTAAGCTGGACCTCAACAGCGCACCCCAGAA
CCTCGTGGCGTGGCCAACGGAGCCCATCCTGAGGCCCACAAGAGCGATCA
TCCCCCCCGCGTTCGGCGTGGACATAAGCCCCATCGTGTGGGTCATGATC
TGCTCGCTCGTGCACGAAATATTGTTGGGGCAGCAAGGTATTCTTAACCT
AATGTCCAACAAGTAG
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