EsuBft940_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft940_10a-0001
Unique Name	EsuBft940_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_561	contig	Scaffold_561:232000..233944 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LHQ1
ProteomeId	EsuBft940_10
Protein domains	IPR009014
Protein domains	IPR029061
Protein domains	IPR005475
Protein domains	PTHR11624
Protein domains	IPR005476
Owner	apollo_admin@sb-roscoff.fr
Note	probable transketolase os:schizosaccharomyces pombe (strain 972 atcc 24843) gn: pe:2 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	741
Hectar predicted targeting category	other localisation
Evalue	2.52e-135
EggNOG OGs	COG0021@1\|root,KOG0523@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	transketolase activity
COG category	G

Cross References

External references for this mRNA


Database	Accession
GO	0006090
GO	0050789
GO	0071840
GO	1901700
GO	0003333
GO	0006006
GO	0016051
GO	0009941
GO	0046686
GO	0009651
GO	0044765
GO	0016168
GO	0016740
GO	0044249
GO	0009570
GO	0044724

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft940_10a	EsuBft940_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_561 232000..233944 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft940_10a-0001-exon	agat-exon-71470	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 232000..232215 +
EsuBft940_10a-0001-exon	EsuBft940_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 232486..232663 +
EsuBft940_10a-0001-exon	agat-exon-71471	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 233200..233325 +
EsuBft940_10a-0001-exon	agat-exon-71469	Ectocarpus subulatus male Bft15b	exon	Scaffold_561 233724..233944 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft940_10a-0001-cds	EsuBft940_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_561 232000..232215 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft940_10a-0001	EsuBft940_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_561 232000..233944 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_561:232000..233944+
coding sequence from alignment at Scaffold_561:232000..233944+

spliced messenger RNA

>EsuBft940_10a-0001 ID=EsuBft940_10a-0001|Name=EsuBft940_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=741bp|location=Sequence derived from alignment at Scaffold_561:232000..233944+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGCTTGCGATAATAATAATTAATGAAACATTTCGGCTTGTCGG
AAATCAAACCGGCAGCGCTCTGTCCAAGTTTGGTGTGGTGTACGTGATGA
CCCACGACTCTATCGGTCTCGGCGAGGACGGGCCTACCCACCAGCCCGTG
GAGGTCATGGAGCTCCTTCGGTCCACCCCTAACATGATGGCCTTCCGCCC
GGCCGACGGGAACGAGGTAACAGGGTCGTACATCTGCGCGATGGAGGCGG
GCTCCACCCCTTCCGTTCTGGCGCTCTCGAGGCAGAACTGCCCCCACCTA
ATGGGGACCTCTGCCGAGCTCGTGGCCAAGGGGGCCTACACCCTCTGCGA
GCACGGACCCGGCGGTGCCCCCGACGTCATCCTCGCCGCCACCGGTTCGG
AGGTGCACATGTGCGTGGACGTGGCCAAGGCTCTCGGAGCCAGCGGCACC
CAAGCCCGCGTGGTGTCAATGCCGTGCTGGGAGCTCTTCGAGCAGCAGGA
CGAAGCGTACCAACTCCAAGTGTTCCCTGCCGGGAGCCCGGTCATGTCGG
TCGAGGCCGGCGGCACCCAGGGCTGGGAGCGGTGGGCGCACGCCCCCTTC
GGGATGGCCCGCTTCGGCGCCTCGGCCCCGTGCAAGCCTCTCTACGAGAA
GTTCGGCTACACCGTGGAAAACCTCACCAAGCAGGCGAGTGCCTTCCCGA
AGTCGATGGCGCTTCCCCTTAAAAACGCACTCTGCTTTTAG

protein sequence of EsuBft940_10a-0001

>EsuBft940_10 ID=EsuBft940_10|Name=EsuBft940_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=246bp
MAPLAIIIINETFRLVGNQTGSALSKFGVVYVMTHDSIGLGEDGPTHQPV
EVMELLRSTPNMMAFRPADGNEVTGSYICAMEAGSTPSVLALSRQNCPHL
MGTSAELVAKGAYTLCEHGPGGAPDVILAATGSEVHMCVDVAKALGASGT
QARVVSMPCWELFEQQDEAYQLQVFPAGSPVMSVEAGGTQGWERWAHAPF
GMARFGASAPCKPLYEKFGYTVENLTKQASAFPKSMALPLKNALCF

mRNA from alignment at Scaffold_561:232000..233944+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft940_10a-0001 ID=EsuBft940_10a-0001|Name=EsuBft940_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1945bp|location=Sequence derived from alignment at Scaffold_561:232000..233944+ (Ectocarpus subulatus male Bft15b)
ATGGCTCCGCTTGCGATAATAATAATTAATGAAACATTTCGGCTTGTCGG
AAATCAAACCGGCAGCGCTCTGTCCAAGTTTGGTGTGGTGTACGTGATGA
CCCACGACTCTATCGGTCTCGGCGAGGACGGGCCTACCCACCAGCCCGTG
GAGGTCATGGAGCTCCTTCGGTCCACCCCTAACATGATGGCCTTCCGCCC
GGCCGACGGGAACGAGGTATGGATGTCCTTACATGTAGGTTCTTTTACTC
TTTCTTGTGTCCGAGGGGAACTTGATACGTTCTGATGTTCTTCTGTCCGC
CGGGAACGAGGTTGTCATTGCGTAGTTTATATTCCTCCGTAAATAGTCAG
TTTTTCGCTTGCATCCATGTCCATGTATGTCACGACTGTTGTCAAGCGTT
TTCTCCACGAACGTCATGCCGAATGACTCCACAAACTTTTTTCTTGTAAT
ATTTTCTCTCGTCTTTGTTCTTTCTCTCCTCGTCAGGTAACAGGGTCGTA
CATCTGCGCGATGGAGGCGGGCTCCACCCCTTCCGTTCTGGCGCTCTCGA
GGCAGAACTGCCCCCACCTAATGGGGACCTCTGCCGAGCTCGTGGCCAAG
GGGGCCTACACCCTCTGCGAGCACGGACCCGGCGGTGCCCCCGACGTCAT
CCTCGCCGCCACCGGTTAGTCGTCATGCCGTACCCCACGCTTTCTAGCAT
TTTCTCTCAAACGCGCGGCGCTTGCTGCGTTCACAGGCCAACACCTGGAA
CTATGAGTTTTGCTTGCTTTGCAGGAGTTTTTTGTTTGTGCGTGTTCATC
ACGTTCCCTCTGTTCGAGCGTTGATTCGCGGTTTGTGCCTCCTTCTTGTA
GCGCGACACAACCGGGTATGCGAGTATCTTGCTTCCCCTTTTTTGTTGCT
CATCGCCTTTTCTGCTGTGGGTCGTTGTTTTCTTGTTCGTCTGAAGTTTG
TTGTGTGGTTGATTTCGTGCAAAAGCAACTCGTGTTTTCGTGGGGTGTGA
GTGTGGCGTTCTCGCAGTTTTCTACTATGGTCAGGATTCGTCGTACAATA
CTCATACGCGAGGCCTTCATCACTACTGTGGCGGGCTGGGATTACAAATG
AAAAAGCGCGATTACTCTTTCGTGCGATTCTGTTCGACTGTTTGCGCCCG
ATTTCATTTCAACCCTATGTTACCGTCAACTTTTTTTTATTGTTTTTTAG
GTTCGGAGGTGCACATGTGCGTGGACGTGGCCAAGGCTCTCGGAGCCAGC
GGCACCCAAGCCCGCGTGGTGTCAATGCCGTGCTGGGAGCTCTTCGAGCA
GCAGGACGAAGCGTACCAACTCCAAGGTACGGGGACACTGCTACTATTGA
TCTATAGTAGCTGCTAATGCTATTGTTTGCGTTGTCTTCGGCGGCGTTCC
TCGCGGTGTTTTATCCACGCGCCTCCTCAGCGGTCTGCACAGGTTTAAGG
CGGCGCACGTGTCTGAAATGGTACCGTACTTCGCAAACGGCTGTCGTTTG
ATGCAGCACACAGAACCAAATATCAAACAAAACAATGTGGAGCCCACACA
CCCCAATTCCGGACTTAATGTGGAGCACGCACACCCCAATCTCGGGCCTT
ATGCGAGCTTCAATCCTTGCCACGTCCCGTATCTGCTGTTGCTGCTCACG
ACGACAACGACGACGACAACAACGGCGACCCTCACTCCTCGCTGACACGC
CTGCGCTGCCGCCCCTTGTCGCAGTGTTCCCTGCCGGGAGCCCGGTCATG
TCGGTCGAGGCCGGCGGCACCCAGGGCTGGGAGCGGTGGGCGCACGCCCC
CTTCGGGATGGCCCGCTTCGGCGCCTCGGCCCCGTGCAAGCCTCTCTACG
AGAAGTTCGGCTACACCGTGGAAAACCTCACCAAGCAGGCGAGTGCCTTC
CCGAAGTCGATGGCGCTTCCCCTTAAAAACGCACTCTGCTTTTAG

Coding sequence (CDS) from alignment at Scaffold_561:232000..233944+

>EsuBft940_10a-0001 ID=EsuBft940_10a-0001|Name=EsuBft940_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=741bp|location=Sequence derived from alignment at Scaffold_561:232000..233944+ (Ectocarpus subulatus male Bft15b)
ATGGCTCCGCTTGCGATAATAATAATTAATGAAACATTTCGGCTTGTCGG
AAATCAAACCGGCAGCGCTCTGTCCAAGTTTGGTGTGGTGTACGTGATGA
CCCACGACTCTATCGGTCTCGGCGAGGACGGGCCTACCCACCAGCCCGTG
GAGGTCATGGAGCTCCTTCGGTCCACCCCTAACATGATGGCCTTCCGCCC
GGCCGACGGGAACGAGGTAACAGGGTCGTACATCTGCGCGATGGAGGCGG
GCTCCACCCCTTCCGTTCTGGCGCTCTCGAGGCAGAACTGCCCCCACCTA
ATGGGGACCTCTGCCGAGCTCGTGGCCAAGGGGGCCTACACCCTCTGCGA
GCACGGACCCGGCGGTGCCCCCGACGTCATCCTCGCCGCCACCGGTTCGG
AGGTGCACATGTGCGTGGACGTGGCCAAGGCTCTCGGAGCCAGCGGCACC
CAAGCCCGCGTGGTGTCAATGCCGTGCTGGGAGCTCTTCGAGCAGCAGGA
CGAAGCGTACCAACTCCAAGTGTTCCCTGCCGGGAGCCCGGTCATGTCGG
TCGAGGCCGGCGGCACCCAGGGCTGGGAGCGGTGGGCGCACGCCCCCTTC
GGGATGGCCCGCTTCGGCGCCTCGGCCCCGTGCAAGCCTCTCTACGAGAA
GTTCGGCTACACCGTGGAAAACCTCACCAAGCAGGCGAGTGCCTTCCCGA
AGTCGATGGCGCTTCCCCTTAAAAACGCACTCTGCTTTTAG