EsuBft93_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft93_4a-0001
Unique NameEsuBft93_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:1085683..1090058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft93_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length86
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft93_4aEsuBft93_4aEctocarpus subulatus male Bft15bgeneScaffold_523 1085683..1090058 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_4a-0001-exonagat-exon-77217Ectocarpus subulatus male Bft15bexonScaffold_523 1085683..1086139 -
EsuBft93_4a-0001-exonEsuBft93_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 1089651..1090058 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_4a-0001-exonagat-three_prime_utr-23282Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1085683..1086019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_4a-0001-cdsEsuBft93_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 1086020..1086139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_4a-0001EsuBft93_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 1086020..1090058 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft93_4a-0001 ID=EsuBft93_4a-0001|Name=EsuBft93_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=865bp|location=Sequence derived from alignment at Scaffold_523:1085683..1090058- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATCGTGATCAGGCCAGGAGCCCTGGCAAGCGCATCATCTCCAGC
GTACCGTCACAAAGGAATACTCCTCGATGTGACGCACGCAGATCCGCAAG
CACAAGTACACTTGCGAAATGGCGGCGCGACCAGCGATGGAACCGCCGCC
CAAGCCTCCGAGGCGCGAAAGCGTCAGCACTATGCTCGGCCAGGACACGT
GTCCTTTGACGAGCGCAGCTATAAACTTACCACCTTAGCGTTGAAAAGCT
TTGGCCGCCTTGGAGAGGAGGGTTACGAATTCATCGACGAACTAGCGACG
CACGCTGCAGGAGGGAGGCATGGAGGAACAATGACCCAGAAAGGATTCTA
CAAGGAGAGGCTACTTCAGGTCGTTTCGGTGGCTACGCAGGTGGCCATAT
CAAGGAGGGTAGTGCAGAGGTACAAGCTCGCATTGCGCGGGCGTCAAGAC
GCCGAAAACAGGCGAACAAGATCGACCTCGGACCAGTCAACGCCAATGAT
ATGGGGATGGAGTGTAGACGCATCGTAGAACGCGTTTTCGTTTGAAGTTG
ACGTCTTGATTTGAGAGTAGATGTGACAGATTTGCGTAGAATAGGGTAAG
AAGATGTTATCATGAACGGAGATGAAAGGGCTTTTCCAACACGGAGATGT
AGCATGGATCAAAGCATTTGTTGGATTTCAGCTTTTACAAGCGGACATCA
ACGCAGTAGTAGTATTTTAGCAAGCTTACGAACGCATAAAGGATACCATC
AGGATTGTCATTGGTAAGTTGAAGAGGAGATACTTTTACGATGTAAATGA
CAGTAGAAATAAGTCCTACATATATATGTTGTTGTACTTCGTATTGGTTT
AATATTCATGTAGAG
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protein sequence of EsuBft93_4a-0001

>EsuBft93_4 ID=EsuBft93_4|Name=EsuBft93_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=175bp
MDIVIRPGALASASSPAYRHKGILLDVTHADPQAQVHLRNGGATSDGTAA
QASEARKRQHYARPGHVSFDERSYKLTTLALKSFGRLGEEGYEFIDELAT
HAAGGRHGGTMTQKGFYKERLLQVVSVATQVAISRRVVQRYKLALRGRQD
AENRRTRSTSDQSTPMIWGWSVDAS
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mRNA from alignment at Scaffold_523:1085683..1090058-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft93_4a-0001 ID=EsuBft93_4a-0001|Name=EsuBft93_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4376bp|location=Sequence derived from alignment at Scaffold_523:1085683..1090058- (Ectocarpus subulatus male Bft15b)
ATGGACATCGTGATCAGGCCAGGAGCCCTGGCAAGCGCATCATCTCCAGC
GTACCGTCACAAAGGAATACTCCTCGATGTGACGCACGCAGATCCGCAAG
CACAAGTACACTTGCGAAATGGCGGCGCGACCAGCGATGGAACCGCCGCC
CAAGCCTCCGAGGCGCGAAAGCGTCAGCACTATGCTCGGCCAGGACACGT
GTCCTTTGACGAGCGCAGCTATAAACTTACCACCTTAGCGTTGAAAAGCT
TTGGCCGCCTTGGAGAGGAGGGTTACGAATTCATCGACGAACTAGCGACG
CACGCTGCAGGAGGGAGGCATGGAGGAACAATGACCCAGAAAGGATTCTA
CAAGGAGAGGCTACTTCAGGTCGTTTCGGTGGCTACGCAGGTGGCCATAT
CAAGGAGGGTACAAAGATACAAGCTCGCACTACGTGGACGACAAGAAGCG
GAGGATCAACGAACAAGATCGACACCGAACACATCGACACCAATGATTTG
GGGATGTAGTGTCGATGCACTGTAACAGTAGGAATGTAATGGGTTAACTT
TTGAGCGTAGGTATAGTTGTTACAAAGCATTTGGTAGGTACATCACATAT
ACTAAAAGAAACGTCAATTTAGTAGTAGATTATGTTCACAAGATTTCGGT
TCAACGACAGGAACTTCTTGTCAGAGTTTTGGAGAGACAAGGTTTTGGCA
TTTTCACAAAGGAAGTAACAGGAGAACGGAGGAAATGTTGAATTCAATCA
ATAATGTTATGATTTCCTTCAGTTTTAAGTTCGGCATTGGTAGGTACGTA
CTAACATGACGTGCATGTACAATATCGTATTCGTACAAGTATGAGCATGA
AGATAGAAATATTATGGGGTATACATTGAGTGAAACGTTTTAGGACTTTA
TTTAGTGCTAACATCTTCACTTGTCGGAGGGCAATAATAATAGTAACAAT
ATTAATAGTTTTAGGCTTCTTAGATAGGGAAAACGAGCCACTGTGAGCAT
GTGCGTCGGGAAGATTATTGGCATCGGTAATGCTGATACTTTCGTTGCTA
ACAAGAAAGTTAATTCGGCCCTCGACTTCGTCGTGACGAGCCGTTGAAGA
TACCCTAACCCCGAGACATAGGGGTCGATAACGGGTGGCGGTAGAACTGA
GGTTCATCCCACGATAAAAATTTCGGGGTGATGGGTATAATCACTCCACA
AGAGGTTTGTGAATGTCCCCGAGCCGGCAATAACTTGACGGAAGTTAGCA
AGAGATGGTCTAATTCAACATCCTCCAGCAGTGTTTGTACTATTGGATGG
CATGTAAAATTGAGATTTTAGGCATGCTGCGACGCTAAGACCCCTGAACT
GGTCAGGGTAGACGGTCGGTTCGAAATTTCCACCGAAAGGGTCCGCGAGA
CGGAAGGGGATACCTTCTGTGCCCGCTGGATAAGAGTGGAGGTTCGCTTG
ACGGTCGTCTTCTTAGGAGCATACCTCTTTGCCGGTGTCCTACGGGTCGT
AGTTTTGCGTTTTTGTCTCGGCATTGTAGTATTACTTGTTATTAACATAC
ATTTTACATTCAAATTGTTAATGAAAATTGAAACCAAAAGTGTCACCACG
GTTCCCTATTTAAATCCTTGCCACTGTGTTAGGCTGTGAGGATTCAGTGA
AAACTTTTTCTGGTTCTTGACCCCTTTTCTATGTCGACTCAGGATCGAGA
CCGGGTCAAGAGTAGTGACGAAGCTCTGATGGTTAGTCTGGACCTTCTTT
TGGGTTCGTGCTTTATAACCCACCTTCTGAATACCTGATGAAAATACTCT
TGGAATTGAACCTGGTGGGTTCCACGCCGTGCTTGAGGAGGTGGAATGGG
GGAATCTATGATGGAGGGCGACTGTTGTCGCCCCTCCTAAGGAGTGCCCT
GTCAAATGATAATTTGGACCCTTCCCGTATTTGTATTGTACCTCGTGGTA
TTTCTGACAGCATTCTCATAATGTTTGGTACCTGTAAAAGTACCTACAGT
TAACGCTGCGTCTGTGTAGAGATCGTGTAGTTTGGACGGAACCATCCCCC
TATTGGCCATCACAACCCTTTTGGTCGCTCTATGCTGGTACACGGCATGT
CGCCTGTCGCTGAGATCATCGTCGTACTCGAAGCCTACTACGTTACGGCG
TCTTTCACTTGGGGCTTTATATGATTCAATACTGAGCTTCGTTTAGGATG
GGGTCACCCTCTGCACCCTGTGGGTTCGCGAACTCTTTTTGGGAATAAGT
TTGAATCTGAGGGTTCGTAAAATACATTATTTGGTTACCGAATGCAGCGC
CCGAGACGTCCATGACTTAATCGACCGATCGGTTCCCTCTCTGATTCCTA
GACCAATATTTCAATGAATTACAAGTACCCTTTGTAAACTAAAATGATAT
TAAACCCCTTCTTTCGATTGTTTTCGAAATTCAACGCCTTCCCGGTCGCC
GTCATATCTATTTGATTTTACCTATTTAGGAACATAATCGTGTGTAAATG
TCTTGATATATTCTCGTTGTCGGCTCCCTTGCCTGTCTGATCGAACCCTG
GTGGGTTCCTCCTTTCATAAATCGCTGTCTAAAGAAATTTTACAAACTGG
GGCCTGATGATCCATCGTGATTTTGAACTTGAAATTAAAACTAACTCATG
GATGAAAACTCGGCGACCGGGAAGGCGTTGAATTTCGAAAATAATCGAAA
CAAATATATATTTTTTTATTATTTTGCTTGCCTTCCGACAAATGCAGATG
TACCTCAGAAAACTTTCACTAAATGTCTCATACTCTACATGAATATTAAA
CCAATACGAAGTACAACAACATATCTCGGACTTATTTCTACTGTCACTTA
CATCGTAAAAATATCTCTTCCAATGACAATCCTCATGGTATCCTACATGC
AATGCGTTCGTAAGCTTGCTAAAATACTACTGCGTTGGTTTTTTTATTGT
TTCTTAAAGTCAATTTTCATCTTTGCCCTCCCTAACCTAAAGGTCTAGCG
AGTGCGGCTTCACTATCAAGTCCGAAAGTGAAGCCTGGTTGGACTACGTC
CAACTTGTGAGTTTTGTTTGTTGGTGGATTATAGTCCACAAGTACACCAT
AATATTGAAATGTCCACTGTTATTGGTGAAATGTCTATTTATTTTATTTT
TTTGCCTTCCGACAATTGCAGATGTACCTCAGAAAGCTTTCACTTAATGT
CTCATACTCTACATGAATATTAAACCAATACGAAGTACAACAACATATGT
AGGACTTATTTCTACTGTCATTTACATCGTAAAAATATCTCCTCTTCAAC
TTGAAATAAAACCAATGACAATCCTGATGGTATCCTATATGCGTTCGTAA
GCTTGCTAAAATACTACTGCGTTGATGTCCGCTTGTAAAAGCTGAAATCC
AACAAATGCTATTGTAAATTCTGATGAAAATATGGAAATACTTGAAAATA
GTATTGTGTCCATGATAAGTGATAATATCCATGATTTTGACAATAACAAC
GATGATTTCAGGATTTTCTCGAGATACGAGAAGAAGGAAATGTGTTCTAA
ACTAAAAGCTAACCAAAGGGATAGACTATGTTGATCACTTTTTTTGGAAA
TACCGAGAAATATGATATCCCGGATATTAAGGAAGAGAAGTATGTATGTA
AATATGATCGTTGACGGACTGAAGGCACCTGGAGCGGTTCCGACGTATGT
GACGATTGTTCGTGAGGATGCAGATGGAGCGTGTCGGTTCCCTCACTTTC
ATTTGGCTACAAAATTTGACTTGTGAAGAATGCGGTAAGATGTGGATCTG
TAAAGTCAAAGTTGTATAATCTGTTTCCGACCTACCATGGAAATATCGAT
TTTTCGATTAAGAATACGAATTACTACCTGGATAAGGCAAAATGCCTAGT
ATGTCCTATAAAGGATAAGGTAGTGCAGAGGTACAAGCTCGCATTGCGCG
GGCGTCAAGACGCCGAAAACAGGCGAACAAGATCGACCTCGGACCAGTCA
ACGCCAATGATATGGGGATGGAGTGTAGACGCATCGTAGAACGCGTTTTC
GTTTGAAGTTGACGTCTTGATTTGAGAGTAGATGTGACAGATTTGCGTAG
AATAGGGTAAGAAGATGTTATCATGAACGGAGATGAAAGGGCTTTTCCAA
CACGGAGATGTAGCATGGATCAAAGCATTTGTTGGATTTCAGCTTTTACA
AGCGGACATCAACGCAGTAGTAGTATTTTAGCAAGCTTACGAACGCATAA
AGGATACCATCAGGATTGTCATTGGTAAGTTGAAGAGGAGATACTTTTAC
GATGTAAATGACAGTAGAAATAAGTCCTACATATATATGTTGTTGTACTT
CGTATTGGTTTAATATTCATGTAGAG
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Coding sequence (CDS) from alignment at Scaffold_523:1085683..1090058-

>EsuBft93_4a-0001 ID=EsuBft93_4a-0001|Name=EsuBft93_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=528bp|location=Sequence derived from alignment at Scaffold_523:1085683..1090058- (Ectocarpus subulatus male Bft15b)
ATGGACATCGTGATCAGGCCAGGAGCCCTGGCAAGCGCATCATCTCCAGC
GTACCGTCACAAAGGAATACTCCTCGATGTGACGCACGCAGATCCGCAAG
CACAAGTACACTTGCGAAATGGCGGCGCGACCAGCGATGGAACCGCCGCC
CAAGCCTCCGAGGCGCGAAAGCGTCAGCACTATGCTCGGCCAGGACACGT
GTCCTTTGACGAGCGCAGCTATAAACTTACCACCTTAGCGTTGAAAAGCT
TTGGCCGCCTTGGAGAGGAGGGTTACGAATTCATCGACGAACTAGCGACG
CACGCTGCAGGAGGGAGGCATGGAGGAACAATGACCCAGAAAGGATTCTA
CAAGGAGAGGCTACTTCAGGTCGTTTCGGTGGCTACGCAGGTGGCCATAT
CAAGGAGGGTAGTGCAGAGGTACAAGCTCGCATTGCGCGGGCGTCAAGAC
GCCGAAAACAGGCGAACAAGATCGACCTCGGACCAGTCAACGCCAATGAT
ATGGGGATGGAGTGTAGACGCATCGTAG
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