EsuBft93_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft93_2a-0001
Unique NameEsuBft93_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:1067215..1067936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft93_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length56
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft93_2aEsuBft93_2aEctocarpus subulatus male Bft15bgeneScaffold_523 1067215..1067936 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_2a-0001-exonEsuBft93_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 1067215..1067746 +
EsuBft93_2a-0001-exonagat-exon-77210Ectocarpus subulatus male Bft15bexonScaffold_523 1067903..1067936 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_2a-0001-exonagat-five_prime_utr-15140Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_523 1067215..1067429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_2a-0001-cdsEsuBft93_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 1067430..1067746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_2a-0001EsuBft93_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 1067430..1067936 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft93_2a-0001 ID=EsuBft93_2a-0001|Name=EsuBft93_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=566bp|location=Sequence derived from alignment at Scaffold_523:1067215..1067936+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCGCTTTAAAGACACTCTTCTTAACGAAACTCCCCGCTATAAAGACAC
ATTTTTTCCCCACCAGAACATGGTGCCCCGCAGATGTACAATAATATAGG
GGGATAGCGTTTCCACTATGCGGCCCCCCCCCCAAATTTTTGCTGGAGCA
GCAAATCTGTAAGCCATTCTAACATCGACAGCGGTCTGCTGCAGCCCGCA
CTACTGCGTGTGGGTATGGAGAGATTCCTCCCATCTGCTGGCGGGTCGTC
AGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTAGTGTAGAGGACGATGAGGAGGTCTTGAGGGAAGAGAT
AGAACTCGAGATGGAAGAGGTAACGGAGAACATGTCAAGAGTACACGTCG
AAGACGACGTGTCCAGTGAAGAGGAAGACCAGGACGGTAGGCAAGAGTCG
TGCATGACATCTATACGATTTCAGAGGCCGAGGCGACTCTTCGGGATGTA
TGTGTGGGCGACGTAG
back to top

protein sequence of EsuBft93_2a-0001

>EsuBft93_2 ID=EsuBft93_2|Name=EsuBft93_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=116bp
MERFLPSAGGSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS
VEDDEEVLREEIELEMEEVTENMSRVHVEDDVSSEEEDQDGRQESCMTSI
RFQRPRRLFGMYVWAT
back to top

mRNA from alignment at Scaffold_523:1067215..1067936+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft93_2a-0001 ID=EsuBft93_2a-0001|Name=EsuBft93_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=722bp|location=Sequence derived from alignment at Scaffold_523:1067215..1067936+ (Ectocarpus subulatus male Bft15b)
CCCCGCTTTAAAGACACTCTTCTTAACGAAACTCCCCGCTATAAAGACAC
ATTTTTTCCCCACCAGAACATGGTGCCCCGCAGATGTACAATAATATAGG
GGGATAGCGTTTCCACTATGCGGCCCCCCCCCCAAATTTTTGCTGGAGCA
GCAAATCTGTAAGCCATTCTAACATCGACAGCGGTCTGCTGCAGCCCGCA
CTACTGCGTGTGGGTATGGAGAGATTCCTCCCATCTGCTGGCGGGTCGTC
AGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTAGTGTAGAGGACGATGAGGAGGTCTTGAGGGAAGAGAT
AGAACTCGAGATGGAAGAGGTAACGGAGAACATGTCAAGAGTACACGTCG
AAGACGACGTGTCCAGTGAAGAGGAAGACCAGGACGGTAGGCAAGAGTCG
TGCATGACATCTATACGATTTCAGAGGCCGAGGTTCGCTCTCGTCTCGAG
GATGTCCGCTCCTATTTGTACGCGAACGGAAGAGACGGCGAGTACAGCGA
AACGGTGTACCTTCTTTCGAAGACTGTGCATTCGTTCACTCATGAAACTC
AAGTCAAGCGAAGAATGAAGGAGGGGGGTGAGGTGCAGGCGACTCTTCGG
GATGTATGTGTGGGCGACGTAG
back to top

Coding sequence (CDS) from alignment at Scaffold_523:1067215..1067936+

>EsuBft93_2a-0001 ID=EsuBft93_2a-0001|Name=EsuBft93_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=351bp|location=Sequence derived from alignment at Scaffold_523:1067215..1067936+ (Ectocarpus subulatus male Bft15b)
ATGGAGAGATTCCTCCCATCTGCTGGCGGGTCGTCAGCTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGT
GTAGAGGACGATGAGGAGGTCTTGAGGGAAGAGATAGAACTCGAGATGGA
AGAGGTAACGGAGAACATGTCAAGAGTACACGTCGAAGACGACGTGTCCA
GTGAAGAGGAAGACCAGGACGGTAGGCAAGAGTCGTGCATGACATCTATA
CGATTTCAGAGGCCGAGGCGACTCTTCGGGATGTATGTGTGGGCGACGTA
G
back to top