EsuBft93_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft93_19a-0001
Unique NameEsuBft93_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:1281680..1282034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft93_19
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length35
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft93_19aEsuBft93_19aEctocarpus subulatus male Bft15bgeneScaffold_523 1281680..1282034 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_19a-0001-exonEsuBft93_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 1281680..1282034 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_19a-0001-exonagat-five_prime_utr-15136Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_523 1281680..1281724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_19a-0001-cdsEsuBft93_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 1281725..1281877 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_19a-0001-exonagat-three_prime_utr-23278Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_523 1281878..1282034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_19a-0001EsuBft93_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 1281725..1281877 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft93_19a-0001 ID=EsuBft93_19a-0001|Name=EsuBft93_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=355bp|location=Sequence derived from alignment at Scaffold_523:1281680..1282034+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTACGTGTTGCTCCTTTGTTTGAGTCATCTAGCTGCTGACACGATGAG
TCTTGGATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGCATACC
ACGATATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGTCCTCC
GCTCTTTGCATCAGTGGCTTCCAGATTCGAGCGAGGGCATTTGTGTAGCT
GAGATGTGTGTCTACGTGAAAGGAAATGTAGAGAGAGTCGTATTGGCATT
TGCATTTAGCGCATTTCGCATTTTCTGAATTTTGGCTCCGTTCCAGCGAC
CTTGATTTTTTACCCGCTGGCACTGACGTATTTTCATTGGTCAGCCGGTT
AGCGC
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protein sequence of EsuBft93_19a-0001

>EsuBft93_19 ID=EsuBft93_19|Name=EsuBft93_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MSLGSWECTIIKLGDAAYHDILASAGLEITLLLSSALCISGFQIRARAFV
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mRNA from alignment at Scaffold_523:1281680..1282034+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft93_19a-0001 ID=EsuBft93_19a-0001|Name=EsuBft93_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=355bp|location=Sequence derived from alignment at Scaffold_523:1281680..1282034+ (Ectocarpus subulatus male Bft15b)
GTGTACGTGTTGCTCCTTTGTTTGAGTCATCTAGCTGCTGACACGATGAG
TCTTGGATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGCATACC
ACGATATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGTCCTCC
GCTCTTTGCATCAGTGGCTTCCAGATTCGAGCGAGGGCATTTGTGTAGCT
GAGATGTGTGTCTACGTGAAAGGAAATGTAGAGAGAGTCGTATTGGCATT
TGCATTTAGCGCATTTCGCATTTTCTGAATTTTGGCTCCGTTCCAGCGAC
CTTGATTTTTTACCCGCTGGCACTGACGTATTTTCATTGGTCAGCCGGTT
AGCGC
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Coding sequence (CDS) from alignment at Scaffold_523:1281680..1282034+

>EsuBft93_19a-0001 ID=EsuBft93_19a-0001|Name=EsuBft93_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_523:1281680..1282034+ (Ectocarpus subulatus male Bft15b)
ATGAGTCTTGGATCTTGGGAGTGTACGATTATCAAATTGGGAGATGCAGC
ATACCACGATATCCTGGCTTCGGCTGGGCTTGAAATAACCCTTTTGCTGT
CCTCCGCTCTTTGCATCAGTGGCTTCCAGATTCGAGCGAGGGCATTTGTG
TAG
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