EsuBft93_18a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft93_18a-0001
Unique NameEsuBft93_18a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_523contigScaffold_523:1269834..1270842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G6I0
ProteomeIdEsuBft93_18
Protein domainsPTHR13140
Protein domainsIPR027417
Protein domainsIPR001609
Ownerapollo_admin@sb-roscoff.fr
Notemyosin-i heavy chain os:dictyostelium discoideum gn:myoi pe:1 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length378
Hectar predicted targeting categoryother localisation
Evalue2.21e-67
EggNOG OGsCOG5022@1|root,KOG0160@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K10352,ko:K10357
KEGG Pathwayko04530,map04530
Descriptionmotor activity
COG categoryZ
BRITEko00000,ko00001,ko03019,ko03029,ko04131,ko04147,ko04812
Cross References
External references for this mRNA
DatabaseAccession
GO0071704
GO0048731
GO0048471
GO0005622
GO0005524
GO0030050
GO0017075
GO0032252
GO0001726
GO0017157
GO0015031
GO0043025
GO0008021
GO0017137
GO0044710
GO0044237
GO0044238
GO0043008
GO0043197
GO0043473
GO0046982
GO0070062
GO0030424
GO0031090
GO0000146
GO0048306
GO0030141
GO0061024
GO0032880
GO0035255
GO0042642
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft93_18aEsuBft93_18aEctocarpus subulatus male Bft15bgeneScaffold_523 1269834..1270842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_18a-0001-exonEsuBft93_18a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_523 1269834..1270030 -
EsuBft93_18a-0001-exonagat-exon-77302Ectocarpus subulatus male Bft15bexonScaffold_523 1270662..1270842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_18a-0001-cdsEsuBft93_18a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_523 1269834..1270030 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft93_18a-0001EsuBft93_18Ectocarpus subulatus male Bft15bpolypeptideScaffold_523 1269834..1270842 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft93_18a-0001 ID=EsuBft93_18a-0001|Name=EsuBft93_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=378bp|location=Sequence derived from alignment at Scaffold_523:1269834..1270842- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAGGGCCATAATGGCGCCGGGGAAGTCGCTGCATGAGATCGCCCT
CACCGCGCGCGAGTCTAGCGACAACCTGTCCGCCCTGTCTAAGCACACCT
ACGGCAAGCTCTTCACCTGGATCGTCGCCTTCATCAACCGCTGCCACCAG
CGGCATGTCCGCGGCGTCATCCTCAACAAAGGAGCAGCCGAACTTGCTGG
GATCGATGACGACGAAGTCAAGCGGTCCTCGTTCATCGGCATCTTGGACA
TCTTTGGTTTCGAGATCATGGAGACCAACAGCTTCGAGCAGCTGTGCATC
AACTTCGCCAACGAGGTCCTGCAGCGGCAGTTCAACCAACACATCTTCGT
GCTGGAGCAGGCAAGCGGGGTTGGATGA
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protein sequence of EsuBft93_18a-0001

>EsuBft93_18 ID=EsuBft93_18|Name=EsuBft93_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=125bp
MWRAIMAPGKSLHEIALTARESSDNLSALSKHTYGKLFTWIVAFINRCHQ
RHVRGVILNKGAAELAGIDDDEVKRSSFIGILDIFGFEIMETNSFEQLCI
NFANEVLQRQFNQHIFVLEQASGVG
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mRNA from alignment at Scaffold_523:1269834..1270842-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft93_18a-0001 ID=EsuBft93_18a-0001|Name=EsuBft93_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1009bp|location=Sequence derived from alignment at Scaffold_523:1269834..1270842- (Ectocarpus subulatus male Bft15b)
ATGTGGAGGGCCATAATGGCGCCGGGGAAGTCGCTGCATGAGATCGCCCT
CACCGCGCGCGAGTCTAGCGACAACCTGTCCGCCCTGTCTAAGCACACCT
ACGGCAAGCTCTTCACCTGGATCGTCGCCTTCATCAACCGCTGCCACCAG
CGGCATGTCCGCGGCGTCATCCTCAACAAAGGTGTCCAAAGCAACAGAAT
GAATCATACAGAAAAACGCTGCAGCAACCACAATATCTCGTTACTGTGCA
ATCACATGTTTAGCTAGTTGGTTGTTAGGCCCGTCTCCCGGCGTCATTAA
CCATCGCATTCATCGGACCATCGTCGACCACAAAAACACCGTTACATTGA
CGAGCATCAAAGGTGGCCCAGCCCAGAACGTTTATGCGGTACGCGTGACA
AACTTTCACCGTCGCCTTATCGTAGCGTGCCTGGTGGCAGCATCTAACGA
GAAGCCAGGACAGGGACGTGGTCCTGTGGAGTGTGGTAGTCGGAGTGGGT
CTTCGCCAGGACTTGAGCATGTACTGCCTGCTGACGTTATCTGCGGAAAC
CAGATGTAACATCTGTAGCACACACCCCAAGCCAGGGCTGATCGTGGCTT
AGAGCGCAAAGGAGAATACTATTGCACGCACACCCAGGCCGATTGTGATA
GAACAGGGTTGCCGAAAACATTGCCAAACCACAACATCGCAAAACGAGTA
GAGGGGCCCACCCGCGATTTGTGGTCAACATGGTATTGCAAGACGGATCC
TGGCGTCAGCTTTGTTGAACAACCCCCGGGACTTTACAATTCTCCTACGA
CTCTTGATGCAGGAGCAGCCGAACTTGCTGGGATCGATGACGACGAAGTC
AAGCGGTCCTCGTTCATCGGCATCTTGGACATCTTTGGTTTCGAGATCAT
GGAGACCAACAGCTTCGAGCAGCTGTGCATCAACTTCGCCAACGAGGTCC
TGCAGCGGCAGTTCAACCAACACATCTTCGTGCTGGAGCAGGCAAGCGGG
GTTGGATGA
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Coding sequence (CDS) from alignment at Scaffold_523:1269834..1270842-

>EsuBft93_18a-0001 ID=EsuBft93_18a-0001|Name=EsuBft93_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=378bp|location=Sequence derived from alignment at Scaffold_523:1269834..1270842- (Ectocarpus subulatus male Bft15b)
ATGTGGAGGGCCATAATGGCGCCGGGGAAGTCGCTGCATGAGATCGCCCT
CACCGCGCGCGAGTCTAGCGACAACCTGTCCGCCCTGTCTAAGCACACCT
ACGGCAAGCTCTTCACCTGGATCGTCGCCTTCATCAACCGCTGCCACCAG
CGGCATGTCCGCGGCGTCATCCTCAACAAAGGAGCAGCCGAACTTGCTGG
GATCGATGACGACGAAGTCAAGCGGTCCTCGTTCATCGGCATCTTGGACA
TCTTTGGTTTCGAGATCATGGAGACCAACAGCTTCGAGCAGCTGTGCATC
AACTTCGCCAACGAGGTCCTGCAGCGGCAGTTCAACCAACACATCTTCGT
GCTGGAGCAGGCAAGCGGGGTTGGATGA
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