EsuBft93_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft93_12a-0001
Unique Name	EsuBft93_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_523	contig	Scaffold_523:1173424..1177216 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G6H3
ProteomeId	EsuBft93_12
Protein domains	IPR016193
Protein domains	IPR028883
Protein domains	PTHR11079
Protein domains	G3DSA
Protein domains	IPR002125
Owner	apollo_admin@sb-roscoff.fr
Note	-specific adenosine deaminase os:haemophilus influenzae (strain atcc 51907 dsm 11121 kw20 rd) g [Automatic annotation]
Nb exon	5
Max annot lvl	2759\|Eukaryota
Length	1758
Hectar predicted targeting category	other localisation
Evalue	9.03e-274
EggNOG OGs	COG0590@1\|root,KOG1018@2759\|Eukaryota
Ec32 ortholog description	Cytidine deaminase-like
Ec32 ortholog	Ec-05_006200.1
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG rclass	RC00477
KEGG ko	ko:K11991,ko:K12193,ko:K15441
KEGG Reaction	R10223
KEGG Pathway	ko04144,ko04217,map04144,map04217
KEGG Module	M00412
EC	3.5.4.33
Description	deaminase activity
COG category	FJ
BRITE	ko00000,ko00001,ko00002,ko01000,ko03016,ko04131,ko04147

Cross References

External references for this mRNA


Database	Accession
EC	3.5.4
GO	0055085
GO	0008251
GO	0002100
GO	0009507
GO	0008270

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft93_12a	EsuBft93_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_523 1173424..1177216 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft93_12a-0001	EsuBft93_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_523 1173649..1177114 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft93_12a-0001-exon	agat-exon-77262	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1173424..1173873 -
EsuBft93_12a-0001-exon	EsuBft93_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1174274..1174366 -
EsuBft93_12a-0001-exon	agat-exon-77259	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1174681..1174809 -
EsuBft93_12a-0001-exon	agat-exon-77260	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1175170..1176104 -
EsuBft93_12a-0001-exon	agat-exon-77261	Ectocarpus subulatus male Bft15b	exon	Scaffold_523 1177066..1177216 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft93_12a-0001-exon	agat-three_prime_utr-23271	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_523 1173424..1173648 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft93_12a-0001-cds	EsuBft93_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_523 1173649..1173873 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft93_12a-0001-exon	agat-five_prime_utr-15132	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_523 1177115..1177216 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_523:1173424..1177216-
coding sequence from alignment at Scaffold_523:1173424..1177216-

spliced messenger RNA

>EsuBft93_12a-0001 ID=EsuBft93_12a-0001|Name=EsuBft93_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1758bp|location=Sequence derived from alignment at Scaffold_523:1173424..1177216- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATCTCTCGCTCAACATGACAAGCAGAGGGCTGAATGCTGCTGCTGGAGCA
GCATTATCGGCCAGATGTATAACACTTATTGTGTTAATCGCTGTGTTGCG
AGATGTGGTGGCTTGGCGGAACGGTGCCTGCCTCCAAAGGCTGCGAGGCA
AGTCCACCAGTCTCGAGGCAGATACGCGCGCACCGCCGGTCAAGAGCCCT
GCCGGGAAGTCTGTCTCCACATCGTGACTCCGGGTGCCACAGTGCTAAGG
ACCATCCCACCACCTCTCGCCGGCGGAGATGTCGATTGCGCAGCGGTAGC
ACTGTCCACGACTGGCCGCTCCCGCCCCAGCGAAGCCAATCGAGTACCGC
CGATTTCGTCGATCGTGAAGAACAGGAGCCGGTAACAGCAGTGGCAAGCG
TTGGGGCTTTGCGAAATGGTAGAAGTGGAGAAACGATGAATCATCGGGGC
GGAGACACCGCAGGTTTTGCCCACCAGACACAAGGCGGAAGTAACCGATG
CCGAAGAAAGCGGCAGCGGCGGCGACAGCGGTTGCGCCTGCAGACCTTAG
GAAACATAGAGGTAGGAGCCGCGGAGGCTTTGGTGGCGATGGAGGCTAAT
ATCGTTGAGGCTGAGAGCTTGGGCCTTGAGGCTGCAATTCGGCCGAGCAC
CGGCGTCGGAGCAGCGGTGGCACCTAGCATTGTAGATAACGAGGCGAACG
TTGCCAACAGGGAAAGGCGAAAGCGGCAGCAGCAACTGCTGCAGGTGGAT
GGTGTCGTGTCTACTGACGAGATTGCCACTAGAGACGACGTGGACGCCGA
CCTCTACCGTTCTGGTGGGAAGGATGTGTCATGCTCAGGTTCTGGTTCGT
TCTCTGAAGAACGCAGCAGTACCAGCACCGGGACGAGGCCGTCGGCGACA
GGGGGGTTGGAAGCCTCACAGCTGATGGCTGAGCAGGCGGAAACCCTTCT
TCAAGGACGACATACGAACGCCGTTCAAGAAAATTTCGCCTCAGAAGTCC
CGAAGTATTCTGAGGAAGATGATGACCGATTTATGCGTATGGCTTTACGG
TTGGCAGGACGAGCCCGCATGGAGGGTGAAGTGCCGATCGGAGCTATTTT
GGCGGAGACCGCGACTACAAGGAGAGATGGAAGGCGACGAGTGCTGTCGA
CCGGCAGAAACGAAGTGGAGGGGCGCCGTGACGCCTCGGCGCACGCCGAA
ATGCTGTGTCTCCAGGCAGCGGCGAAAGCACGGGGCAACTGGAGGCTTGC
CGGGACCACGCTCTACGTCACGGTGGAGCCGTGTGCCATGTGTCTTTCAG
CCGCACAGCTTTTCCGGGTGGATAGGGTGGTGTTCGGAGCCCCGAACCCT
AATCTCGGGGCTTGTGGCGGCTGGGTGGACCTGTCCTCTCAAAGACACGC
CTTTCATGAGCTCGAAGTCAAGGGGGGCGTGCTCGCGGAGGAGTGCGCGT
TACCCTTGCGTGGATTTTTTCGCTCGAGGAGAAGAGAGGAGGAGATTGCG
TCGGCCGGCGACGGTGTTGCTGACACGCCGTGATGTTCGGGGATCGACGT
TGGGCGAAAGGGGGGATTTGTGGGAGGAGAAACAGGCACATCTTATGATG
GCTTTGGATTAGGAGCAACGTTGGAAGCCGCTCGTTCTGGTGCCTGTCAT
GAGCAACATCGATAATGGCACAAAGGCTTGTTCGTGGCGTTGACATGCAG
TATCTGCCGATTCGGTGAAATTGCAATCATCCGTCCTAGCACGCGCCGAG
GAACGCGT

protein sequence of EsuBft93_12a-0001

>EsuBft93_12 ID=EsuBft93_12|Name=EsuBft93_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=476bp
MWWLGGTVPASKGCEASPPVSRQIRAHRRSRALPGSLSPHRDSGCHSAKD
HPTTSRRRRCRLRSGSTVHDWPLPPQRSQSSTADFVDREEQEPVTAVASV
GALRNGRSGETMNHRGGDTAGFAHQTQGGSNRCRRKRQRRRQRLRLQTLG
NIEVGAAEALVAMEANIVEAESLGLEAAIRPSTGVGAAVAPSIVDNEANV
ANRERRKRQQQLLQVDGVVSTDEIATRDDVDADLYRSGGKDVSCSGSGSF
SEERSSTSTGTRPSATGGLEASQLMAEQAETLLQGRHTNAVQENFASEVP
KYSEEDDDRFMRMALRLAGRARMEGEVPIGAILAETATTRRDGRRRVLST
GRNEVEGRRDASAHAEMLCLQAAAKARGNWRLAGTTLYVTVEPCAMCLSA
AQLFRVDRVVFGAPNPNLGACGGWVDLSSQRHAFHELEVKGGVLAEECAL
PLRGFFRSRRREEEIASAGDGVADTP

mRNA from alignment at Scaffold_523:1173424..1177216-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft93_12a-0001 ID=EsuBft93_12a-0001|Name=EsuBft93_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3793bp|location=Sequence derived from alignment at Scaffold_523:1173424..1177216- (Ectocarpus subulatus male Bft15b)
ATCTCTCGCTCAACATGACAAGCAGAGGGCTGAATGCTGCTGCTGGAGCA
GCATTATCGGCCAGATGTATAACACTTATTGTGTTAATCGCTGTGTTGCG
AGATGTGGTGGCTTGGCGGAACGGTGCCTGCCTCCAAAGGCTGCGAGGCA
AGTGGGCATGCACAGCAGCAGGGTACCGGCAGTGGTGTACAGTCAGCAGT
GATACCGGGCATGTGTTATACCGGTCCTGTAGGGCGTACCAATGCGAATT
TCCCTCGTATAGCGGGGGCTGTAGAACCATGTTTACTCTATGCCTGTCTG
CCGGCAATGTTTCATCTTCCTGTGCTCCCTCTTTGCTAGAATGTGACATG
TTCGCGGCCACGTTCAATGAGTCATAGACTTCCGAAGTGACACAAGATAC
CACACCCCCCGACCGAATTTAGAGAGATCGATTACACCACCGTGGAGAGT
GGCAGTGCCGAAAATGGCGGCGTTGGAACGGCCCCATCGGGACCTTTCCG
AAAGATTACCAAGTTATTTTGGTGTTCTGTTCGTCGCGGAGTAGTCGAGC
TTTGAGTAATGGTCCAGGGGGTGTGGTATCTTGTGTCGCCTGTCGCCTAT
GGTATGCGTTGACCATGGGTGAAACCCGATCGACCTGGTTGTTCTACAGT
TTGCCCGTCAGGCACGCATAGATTGCATGCATATTTGCAGCTTGCACCTT
GGCCATGTGCTTCGATGGCAACAGGGGAGCGGCGATATCTGTCATCATCG
GTGATGAATATACAGAGCTACACGAGTCGCGAAGAGTTGCCTGCACCTCC
CCCTTCCGTCGGACTTGAGATCGATGCATGAAGGACACACGGTCGCACCT
GTGCACCATGTCGACTGAGCTATTTAGCAAGTCAGCGACGGAGTGTTCGC
TCAGTGGTACCACGTAGTAAACAAGACAGTGCACCCAGCGATACCACTTT
TGGCGTTTAATAACATCATCATCCGGTGTGCTATTTGCGGGGAGAGTGTC
TAGGTCACACCAGTGCTACCGAGAGAGTATCCTTCGTGAGCCTTATTTAT
CCCTAACTAAACCGGAAACAACATTGGACCTCGTTCACCCAACACCTGAT
ACCCTTTCACAGGTCCACCAGTCTCGAGGCAGATACGCGCGCACCGCCGG
TCAAGAGCCCTGCCGGGAAGTCTGTCTCCACATCGTGACTCCGGGTGCCA
CAGTGCTAAGGACCATCCCACCACCTCTCGCCGGCGGAGATGTCGATTGC
GCAGCGGTAGCACTGTCCACGACTGGCCGCTCCCGCCCCAGCGAAGCCAA
TCGAGTACCGCCGATTTCGTCGATCGTGAAGAACAGGAGCCGGTAACAGC
AGTGGCAAGCGTTGGGGCTTTGCGAAATGGTAGAAGTGGAGAAACGATGA
ATCATCGGGGCGGAGACACCGCAGGTTTTGCCCACCAGACACAAGGCGGA
AGTAACCGATGCCGAAGAAAGCGGCAGCGGCGGCGACAGCGGTTGCGCCT
GCAGACCTTAGGAAACATAGAGGTAGGAGCCGCGGAGGCTTTGGTGGCGA
TGGAGGCTAATATCGTTGAGGCTGAGAGCTTGGGCCTTGAGGCTGCAATT
CGGCCGAGCACCGGCGTCGGAGCAGCGGTGGCACCTAGCATTGTAGATAA
CGAGGCGAACGTTGCCAACAGGGAAAGGCGAAAGCGGCAGCAGCAACTGC
TGCAGGTGGATGGTGTCGTGTCTACTGACGAGATTGCCACTAGAGACGAC
GTGGACGCCGACCTCTACCGTTCTGGTGGGAAGGATGTGTCATGCTCAGG
TTCTGGTTCGTTCTCTGAAGAACGCAGCAGTACCAGCACCGGGACGAGGC
CGTCGGCGACAGGGGGGTTGGAAGCCTCACAGCTGATGGCTGAGCAGGCG
GAAACCCTTCTTCAAGGACGACATACGAACGCCGTTCAAGAAAATTTCGC
CTCAGAAGTCCCGAAGTATTCTGAGGAAGATGATGACCGATTTATGCGTA
TGGCTTTACGGTTGGCAGGACGAGCCCGCATGGAGGGTGAAGTGCCGGTG
AGTACCCCCCTTCGTTGTATCGCTTCGTTGGTTCCGCACAGCTGCAAGCC
ATACTCGTTGTTTTTTTTCATTTCGTTGCGAGTGACCTGCTGCATGCATT
TGTGGCACGATCGGTTGGCGTTTCGGTATCCTCTTTTTATCGTCGAGCTG
GCCTTTGATCGTGTATTTGTTGCTCCCATGCATCCCAATCGCGTGGCCGT
TAGGAAGTTGACAGGAAGGCCACGTGTGCTTCCTACAAGCCCAATACGAA
GCATTGTTACTCTGGTCCAAGTGATTATTCCTTCATCGATGCCTAACTCT
ACCCCCTTCAACCATCTGCTTGTGCACTTCCTTCTGTCGCACTGGGTATT
TGTCCAGATCGGAGCTATTTTGGCGGAGACCGCGACTACAAGGAGAGATG
GAAGGCGACGAGTGCTGTCGACCGGCAGAAACGAAGTGGAGGGGCGCCGT
GACGCCTCGGCGCACGCCGAAATGCTGTGTCTCCAGGTGGATCTATGTGG
TTGAGGACCGAAACGCATTGGTCGGATTGGCAATAGGAGCCGAACAGGGC
TGACATGGAGTGTGCTGCTGTCCAACCTAACTGCTCGCTCTTTGAGTGCC
TTGTTGAGCATCACTTGGAGCAAACTTCCAACTTGCTGCCGAGGCTCCTT
GGTCGGTGACACCCCAACCTAGAAGGGATTTACCACGAAAGGAATCAACT
CGCACCCGTTCTGGGTGCGTCCGATATTTTACTAACGCATGCCGTACCTT
CCGTTTTTTCATGCGTACACTCTACATGGCCAACAACCCCAACCCGCAAG
GCAGCGGCGAAAGCACGGGGCAACTGGAGGCTTGCCGGGACCACGCTCTA
CGTCACGGTGGAGCCGTGTGCCATGTGTCTTTCAGCCGCACAGGTCGGAG
CCAGCACCGCAAATAAGTCCTGTTTATTGAAGTGCTCCGACCACCGTCGC
AGTAGTATCAACGTATAGGAGATTGTCTCGGTCAAGGACGCATGCTCTCG
TGATTTTGTCAACATGGAGTGTGAACGAGCGATGACGGCGCGATTGACGA
CCTGTCCTCGGGTTTCTGCAATTGCAAGCCCCCGATCCACCAGATATAAT
CTTGACCTTACCATCTCCGAGTACGTAGACGGCTTGTGAGTTTCGGCTCC
CGAACGCCCCACCAGGCTCGTCACCTGATACTGTTCTTCTCAGGAACGTG
CTTAGTCTGACAAAACCGCATCTGGTTGATTTTTGTCATTTGTGTCTCTC
CAACCAGTGCGCCCGGCTCCCATTTTTCGCGTTGCCGTCTCAGCTTTTCC
GGGTGGATAGGGTGGTGTTCGGAGCCCCGAACCCTAATCTCGGGGCTTGT
GGCGGCTGGGTGGACCTGTCCTCTCAAAGACACGCCTTTCATGAGCTCGA
AGTCAAGGGGGGCGTGCTCGCGGAGGAGTGCGCGTTACCCTTGCGTGGAT
TTTTTCGCTCGAGGAGAAGAGAGGAGGAGATTGCGTCGGCCGGCGACGGT
GTTGCTGACACGCCGTGATGTTCGGGGATCGACGTTGGGCGAAAGGGGGG
ATTTGTGGGAGGAGAAACAGGCACATCTTATGATGGCTTTGGATTAGGAG
CAACGTTGGAAGCCGCTCGTTCTGGTGCCTGTCATGAGCAACATCGATAA
TGGCACAAAGGCTTGTTCGTGGCGTTGACATGCAGTATCTGCCGATTCGG
TGAAATTGCAATCATCCGTCCTAGCACGCGCCGAGGAACGCGT

Coding sequence (CDS) from alignment at Scaffold_523:1173424..1177216-

>EsuBft93_12a-0001 ID=EsuBft93_12a-0001|Name=EsuBft93_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1431bp|location=Sequence derived from alignment at Scaffold_523:1173424..1177216- (Ectocarpus subulatus male Bft15b)
ATGTGGTGGCTTGGCGGAACGGTGCCTGCCTCCAAAGGCTGCGAGGCAAG
TCCACCAGTCTCGAGGCAGATACGCGCGCACCGCCGGTCAAGAGCCCTGC
CGGGAAGTCTGTCTCCACATCGTGACTCCGGGTGCCACAGTGCTAAGGAC
CATCCCACCACCTCTCGCCGGCGGAGATGTCGATTGCGCAGCGGTAGCAC
TGTCCACGACTGGCCGCTCCCGCCCCAGCGAAGCCAATCGAGTACCGCCG
ATTTCGTCGATCGTGAAGAACAGGAGCCGGTAACAGCAGTGGCAAGCGTT
GGGGCTTTGCGAAATGGTAGAAGTGGAGAAACGATGAATCATCGGGGCGG
AGACACCGCAGGTTTTGCCCACCAGACACAAGGCGGAAGTAACCGATGCC
GAAGAAAGCGGCAGCGGCGGCGACAGCGGTTGCGCCTGCAGACCTTAGGA
AACATAGAGGTAGGAGCCGCGGAGGCTTTGGTGGCGATGGAGGCTAATAT
CGTTGAGGCTGAGAGCTTGGGCCTTGAGGCTGCAATTCGGCCGAGCACCG
GCGTCGGAGCAGCGGTGGCACCTAGCATTGTAGATAACGAGGCGAACGTT
GCCAACAGGGAAAGGCGAAAGCGGCAGCAGCAACTGCTGCAGGTGGATGG
TGTCGTGTCTACTGACGAGATTGCCACTAGAGACGACGTGGACGCCGACC
TCTACCGTTCTGGTGGGAAGGATGTGTCATGCTCAGGTTCTGGTTCGTTC
TCTGAAGAACGCAGCAGTACCAGCACCGGGACGAGGCCGTCGGCGACAGG
GGGGTTGGAAGCCTCACAGCTGATGGCTGAGCAGGCGGAAACCCTTCTTC
AAGGACGACATACGAACGCCGTTCAAGAAAATTTCGCCTCAGAAGTCCCG
AAGTATTCTGAGGAAGATGATGACCGATTTATGCGTATGGCTTTACGGTT
GGCAGGACGAGCCCGCATGGAGGGTGAAGTGCCGATCGGAGCTATTTTGG
CGGAGACCGCGACTACAAGGAGAGATGGAAGGCGACGAGTGCTGTCGACC
GGCAGAAACGAAGTGGAGGGGCGCCGTGACGCCTCGGCGCACGCCGAAAT
GCTGTGTCTCCAGGCAGCGGCGAAAGCACGGGGCAACTGGAGGCTTGCCG
GGACCACGCTCTACGTCACGGTGGAGCCGTGTGCCATGTGTCTTTCAGCC
GCACAGCTTTTCCGGGTGGATAGGGTGGTGTTCGGAGCCCCGAACCCTAA
TCTCGGGGCTTGTGGCGGCTGGGTGGACCTGTCCTCTCAAAGACACGCCT
TTCATGAGCTCGAAGTCAAGGGGGGCGTGCTCGCGGAGGAGTGCGCGTTA
CCCTTGCGTGGATTTTTTCGCTCGAGGAGAAGAGAGGAGGAGATTGCGTC
GGCCGGCGACGGTGTTGCTGACACGCCGTGA