EsuBft937_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft937_7a-0001
Unique Name	EsuBft937_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Properties


Property Name	Value
Seed ortholog	2880.D7FXC2
ProteomeId	EsuBft937_7
Protein domains	IPR001680
Protein domains	IPR017986
Protein domains	IPR015943
Owner	apollo_admin@sb-roscoff.fr
Note	peptidyl-prolyl cis-trans isomerase cyp71 os:arabidopsis thaliana gn:cyp71 pe:1 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	561
Hectar predicted targeting category	other localisation
Evalue	2.51e-48
EggNOG OGs	KOG0882@1\|root,KOG0882@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Preferred name	PPWD1
KEGG ko	ko:K12736,ko:K14569
KEGG Pathway	ko03008,map03008
GOs	GO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0000785,GO:0000790,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007389,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009909,GO:0009933,GO:0009965,GO:0009987,GO:0010015,GO:0010016,GO:0010051,GO:0010073,GO:0010075,GO:0010082,GO:0010305,GO:0010338,GO:0010358,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031056,GO:0031060,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033218,GO:0034641,GO:0036211,GO:0040008,GO:0040029,GO:0042277,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048364,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048442,GO:0048443,GO:0048444,GO:0048447,GO:0048449,GO:0048453,GO:0048464,GO:0048466,GO:0048467,GO:0048507,GO:0048509,GO:0048519,GO:0048523,GO:0048532,GO:0048580,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:0140096,GO:1901360,GO:1901564,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905392,GO:1905393,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000280,GO:2001141
EC	5.2.1.8
Description	peptidyl-prolyl cis-trans isomerase activity
COG category	O
BRITE	ko00000,ko00001,ko01000,ko03009,ko03041,ko03110

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_376:126819..129114-
coding sequence from alignment at Scaffold_376:126819..129114-

spliced messenger RNA

>EsuBft937_7a-0001 ID=EsuBft937_7a-0001|Name=EsuBft937_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=561bp|location=Sequence derived from alignment at Scaffold_376:126819..129114- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCCAAGGGGAGAGTGGCGGTGGCGGATGCGGACTCCCCCGCGAT
ACGAGTGTACGTATCGGACGGCTCTACGGACGCCGTGGGGCAGTTCGACG
GGCACAGTAGCCCCGTCCTGTCGTTGGCGTTCAACGAGCCCGCCAAGACG
GTCGTGTCCGCTGACAGGAGCGGCGTGTTGGAGTACTGGAGTGCGGATGA
CTACGGCCGCCCCCCGGCACGGGCGGTGAAGTTCAAGTTTAAGATGGACA
CGGACCTGTACGATCTGGCCAAGGCCAAGACGCGGCCTTGCAGCATCTCC
TTCAGCCCGGATGGGAAGAGCATGGCCGTCACCGCCAGGGATAAGCAGGC
ATGGTCGGTTCGAGCGTTCGACTTCCGAACCGGGAAGCTGCGGCGCAAGT
ACGACGAGAGCAGGAGGGCGATGGAGGACATGCTCGCCTCGGGACAGCTC
AAGATGGATGCCATGGACCTCGGAAAGAAGTCTGCCGTGGAGAAGGAGCT
GGAGGTATCTACGGCGCATTTTGCAGGATTTGTGACACCACAAGGCCGAT
TTTCTGTTTGA

protein sequence of EsuBft937_7a-0001

>EsuBft937_7 ID=EsuBft937_7|Name=EsuBft937_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=186bp
MDSKGRVAVADADSPAIRVYVSDGSTDAVGQFDGHSSPVLSLAFNEPAKT
VVSADRSGVLEYWSADDYGRPPARAVKFKFKMDTDLYDLAKAKTRPCSIS
FSPDGKSMAVTARDKQAWSVRAFDFRTGKLRRKYDESRRAMEDMLASGQL
KMDAMDLGKKSAVEKELEVSTAHFAGFVTPQGRFSV

mRNA from alignment at Scaffold_376:126819..129114-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft937_7a-0001 ID=EsuBft937_7a-0001|Name=EsuBft937_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2296bp|location=Sequence derived from alignment at Scaffold_376:126819..129114- (Ectocarpus subulatus male Bft15b)
ATGGATTCCAAGGTACACACGATCACACATGCCATCCTCACACCCCTCTC
AATTCCCCGTTCATAGTTCTTTGGAAGCATACAACCTATATATCAGTCAG
ATAATCCTACACCAAAACCTATGTTGTCATACGATCCTACACTATACCTA
CGTAGTCAGATAATCCTACGCTAAAACCTACTAGTATATAGTTAAGCGTT
CATATTCACCGCAGAGATAAAAGAAACTAGCCTCAGGTAAAATAGGCGGT
TTTTGTGTGGTGGTTCGTTCTTTCTGTAAGAATGTCAATTTCCCCCGACT
ATCACACATTTCAACCTCACACGCATCTCAGTTCTCCGTTCGTGGTTCTC
TGGATGCATGCCTCCTCATTGTAGAACCATGCTTGTCTTCCGATTGTGCG
TCCTCAACATAGAGAATTGTAATACATCAGTAGTCCATTGCACTCCTACC
CTGTACAAATTTAAGTCAAGCGGGGCCAACTTTCAGCATCAGGCACGCGA
TATTTCTCCGATCATCGACCGCGTGGGTTTCGACTTTCTTTTGGCGTGCT
TTTTTTTTCTTTTGTGACAGGGGAGAGTGGCGGTGGCGGATGCGGACTCC
CCCGCGATACGAGTGTACGTATCGGACGGCTCTACGGACGCCGTGGGGCA
GTTCGACGGGCACAGTAGCCCCGTCCTGTCGTTGGCGTTCAACGAGCCCG
CCAAGACGGTCGTGTCCGCTGACAGGTACGTCGTGCGTGCGTGTTGTCTA
CACTTGTTTTTGAACATTGTATACCTGTTCTAGGTACGTTAGCCTGTGTC
CACGGAAATTGACCGAGTCAAGTGCTGGATTAGTACGGAGAGATTGAGAC
AGAAGGAGGTACTGGATAGAGAGACCGGGATGGTTTTTAATGTGAAGACA
ACAACAACAACAACTCTTATGTACCCGTTCGAGTATTTTTGTATAGCTTC
GTTGTGGGAAGCATCGACCAATGTACGTTGCGGAGTGATGAATAGGAGAT
GTCGGTCCCAGTGCGGCTAAGACCGGAACACGCCTCGGAAGGCCATGCTT
TGGGTGCGGTGACGTGGTTTGTTGGCGATCAAACGAGCCGACCAAGACGG
TCGTGCCCGCTGACAGGTGTGTCGTGCGTGCGTGTGTGTGTGTGTGTTTC
TTATTTTGTTTATGTTGGCATTTACCGTGTCAACCGGCTGAAAAATAACA
TGATGTCAGCCTCCGTGCGGTTGAAAACACAAAATGCTTCCAAAGGCCAT
GATCTGGGTGAGGCTATGGGTGTCATTACCATGGTAATAGTTATCGAGAA
GGCAGTATTCATTTATTTTCTCCGTCCTTTGAAACTCCCAAAAATGAGGG
GAAAAGGTGCACGGGCGAGAATTTTAGCACACCGACTATTTTGTGTACAG
TCCTTGTACCTTCTGCTGCTGATGAGAAAGGTTTGTGTGTACACGTGTGT
TTCACATGTGTTTCATGAGTTGGCTGCCTTAACAATTTGAACCGCTAGGC
CAAATCTCCCTTTGCGTGAAACCATTTTGCGCACACGATTATTTGCTTAG
GAGCGGCGTGTTGGAGTACTGGAGTGCGGATGACTACGGCCGCCCCCCGG
CACGGGCGGTGAAGTTCAAGTTTAAGATGGACACGGACCTGTACGATCTG
GCCAAGGCCAAGACGCGGCCTTGCAGCATCTCCTTCAGCCCGGATGGGAA
GAGCATGGCCGTCACCGCCAGGGATAAGCAGGCATGGTCGGTGGAGGGGG
GGGGATGTCCTCGTGTGTTGCATGCCTTAGTTTTTAGACCATTGACCACG
CATCCTGGAGAGAACGGAGGATTGGACCGATCACCGACGGCCAATTGTTC
TTGACCTACTGAGCTGAAGGTGGCTCAGGTGCGGTCGGGGGACGGGTCAT
TGTTGTTTTAGCTGCCGATGCTGCGGCTGTTTCGTATTTTTTTATGGTAG
TAGTGAGTGTCCTGGTAATGGCGGCCTAACCATAAGGTAGGGTACCAACC
CTACGCCCCTAGCCCACCCTCTTACGAAACAAAGCCATGGACTTCTCTTC
TTGCTTTCGGGCTTTGTGGCGCCATCCTCACCCTGTACATAGGTTCGAGC
GTTCGACTTCCGAACCGGGAAGCTGCGGCGCAAGTACGACGAGAGCAGGA
GGGCGATGGAGGACATGCTCGCCTCGGGACAGCTCAAGATGGATGCCATG
GACCTCGGAAAGAAGTCTGCCGTGGAGAAGGAGCTGGAGGTATCTACGGC
GCATTTTGCAGGATTTGTGACACCACAAGGCCGATTTTCTGTTTGA

Coding sequence (CDS) from alignment at Scaffold_376:126819..129114-

>EsuBft937_7a-0001 ID=EsuBft937_7a-0001|Name=EsuBft937_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=561bp|location=Sequence derived from alignment at Scaffold_376:126819..129114- (Ectocarpus subulatus male Bft15b)
ATGGATTCCAAGGGGAGAGTGGCGGTGGCGGATGCGGACTCCCCCGCGAT
ACGAGTGTACGTATCGGACGGCTCTACGGACGCCGTGGGGCAGTTCGACG
GGCACAGTAGCCCCGTCCTGTCGTTGGCGTTCAACGAGCCCGCCAAGACG
GTCGTGTCCGCTGACAGGAGCGGCGTGTTGGAGTACTGGAGTGCGGATGA
CTACGGCCGCCCCCCGGCACGGGCGGTGAAGTTCAAGTTTAAGATGGACA
CGGACCTGTACGATCTGGCCAAGGCCAAGACGCGGCCTTGCAGCATCTCC
TTCAGCCCGGATGGGAAGAGCATGGCCGTCACCGCCAGGGATAAGCAGGC
ATGGTCGGTTCGAGCGTTCGACTTCCGAACCGGGAAGCTGCGGCGCAAGT
ACGACGAGAGCAGGAGGGCGATGGAGGACATGCTCGCCTCGGGACAGCTC
AAGATGGATGCCATGGACCTCGGAAAGAAGTCTGCCGTGGAGAAGGAGCT
GGAGGTATCTACGGCGCATTTTGCAGGATTTGTGACACCACAAGGCCGAT
TTTCTGTTTGA