EsuBft937_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft937_3a-0001
Unique NameEsuBft937_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_376contigScaffold_376:86604..91901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXB9
ProteomeIdEsuBft937_3
Protein domainsIPR000223
Protein domainsIPR028360
Protein domainsIPR019759
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR015927
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Notemitochondrial inner membrane protease subunit 2 os:mus musculus gn:immp2l pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1210
Hectar predicted targeting categorysignal peptide
Evalue1.2e-123
EggNOG OGsCOG0681@1|root,KOG1568@2759|Eukaryota
Ec32 ortholog descriptionImp2 homolog, Inner Membrane Peptidase complex subunit 2
Ec32 orthologEc-04_000030.1
Date last modified2016-06-14
Date creation2016-06-14
KEGG koko:K09648
KEGG Pathwayko03060,map03060
Descriptionprotein processing involved in protein targeting to mitochondrion
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Cross References
External references for this mRNA
DatabaseAccession
GO0008236
GO0030728
GO0006508
GO0007283
GO0006627
GO0042720
GO0001541
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft937_3aEsuBft937_3aEctocarpus subulatus male Bft15bgeneScaffold_376 86604..91901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_3a-0001EsuBft937_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_376 87299..91853 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_3a-0001-exonagat-exon-34364Ectocarpus subulatus male Bft15bexonScaffold_376 86604..86642 -
EsuBft937_3a-0001-exonEsuBft937_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_376 86704..87418 -
EsuBft937_3a-0001-exonagat-exon-34365Ectocarpus subulatus male Bft15bexonScaffold_376 88442..88610 -
EsuBft937_3a-0001-exonagat-exon-34362Ectocarpus subulatus male Bft15bexonScaffold_376 90846..90938 -
EsuBft937_3a-0001-exonagat-exon-34363Ectocarpus subulatus male Bft15bexonScaffold_376 91708..91901 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_3a-0001-exonagat-three_prime_utr-23246Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_376 86604..86642 -
EsuBft937_3a-0001-exonagat-three_prime_utr-23247Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_376 86704..87298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_3a-0001-cdsEsuBft937_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_376 87299..87418 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_3a-0001-exonagat-five_prime_utr-15113Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_376 91854..91901 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft937_3a-0001 ID=EsuBft937_3a-0001|Name=EsuBft937_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1210bp|location=Sequence derived from alignment at Scaffold_376:86604..91901- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCCACGAGCCTCTGCTGCTCTCTTGCCCTCTGTCCGCGAAGACACCAT
GGCCCAGGCCGCAGCGGGTAACGTTCTCCGTGCATCACTGTTTGCCATGC
CGGTGGCGTTGGCGTTCCATGACGTCGTAGGGTCCCCGGTGCAAGTGGAA
GGGAGGTCGATGCAGCCGGCGATCAACCCGCACTTGGGACCAGAGAGCCA
ACAAGGCGGAAGCCTGGACGTGGTGTGGCAAGACAAACTGAGCATCTCGA
GACACATCTACGAGCGAGGCTCCATCGTCGTCTTCAGGAATCCCTTCGAC
CCGAAAGAGCGGGTCGTGAAGCGACTGATCGGCGTCGATGGCGACTGGGT
GCGACCAAGGGGCAACAAGCACAACCTGATGAGAGTGCCGGAGGGATACT
GCTGGGTAGAGGGTGACAATCACGGGGTCAGCGGAGACAGCAACCATTTT
GGACCGATACCGCTGGCGCTCATTGAGGCAAAAGCGACCCACGTTTTGTG
GCCACCAGGAAGAATGCGCAGGCTGGGCCAAGATTTGCCGGTAATCCACC
GCGGTTTGAATCCATCCCAAGCGTGACAGAGCGGGCGCCACTTGTGCTTA
TTCTCTTTGTGTTCCGAAGGGGGGGTCCCAAGGGAAGACGCACAGACGTG
GTAAACAGAGGAGTATATATACGGCTTGGGAGCAGCGATTCACTGGCGGA
GTTTGGATATGACGTGCGGCTTTTTTGCTGAGGGTACAGAAAGAGCCCAT
TCGCTCGTGTTCGCTTCTGGTGGCGCACGGCTCTTGTGCTGCTAAATAAA
GGTACAGGGCTACTTCGCTTTAGCCGATCGATGTATTGGGCTATGGCCGC
CCTTGATTGTTTTGTTAAAACATCCAACTCGAGGTGTTCATGGATGAGAC
GAAGAAAACGTGTTGTCGTTGTTGTCGTGCTCATTTGCTACTTCTTCGTT
CTTGATAGCTGAGAGCGCGAGCCATAACGTCAAAGGGTAGCTCTAAGGAT
AAGGGTTCGGCCCTTTTGCTGAACCGCTGCAAGTTTGTGATTTGACCGAT
GGATTATTTTCCGTGAGCGGTATGCCCGTATGTTCCTGCAACTGGCCAGA
GTTGTCTGAATCATCCCCCCCCCACAGTGTTTGCCATCGGGGTTGGGTTT
TCGTCGCTTGGCAACGACGTTGACGTTGTAAAACAAGCCAATTCACTTCG
TGAACTCGGC
back to top

protein sequence of EsuBft937_3a-0001

>EsuBft937_3 ID=EsuBft937_3|Name=EsuBft937_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=175bp
MAQAAAGNVLRASLFAMPVALAFHDVVGSPVQVEGRSMQPAINPHLGPES
QQGGSLDVVWQDKLSISRHIYERGSIVVFRNPFDPKERVVKRLIGVDGDW
VRPRGNKHNLMRVPEGYCWVEGDNHGVSGDSNHFGPIPLALIEAKATHVL
WPPGRMRRLGQDLPVIHRGLNPSQA
back to top

mRNA from alignment at Scaffold_376:86604..91901-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft937_3a-0001 ID=EsuBft937_3a-0001|Name=EsuBft937_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5298bp|location=Sequence derived from alignment at Scaffold_376:86604..91901- (Ectocarpus subulatus male Bft15b)
CCCCCACGAGCCTCTGCTGCTCTCTTGCCCTCTGTCCGCGAAGACACCAT
GGCCCAGGCCGCAGCGGGTAACGTTCTCCGTGCATCACTGTTTGCCATGC
CGGTGGCGTTGGCGTTCCATGACGTCGTAGGGTCCCCGGTGCAAGTGGAA
GGGAGGTCGATGCAGCCGGCGATCAACCCGCACTTGGGACCAGAGTAAGC
AGCAGCCAATGTGTGACTGACCGCGCTGGCCATGTCGTTTGGCATCTTCC
AGCTCCTTTCCTCCATCCAGTTGAGGGAGGAGCAGACACCTGAGGAGTTT
CTGTAGGCCCAAGGCGGATTTTGAGTGCACCGGACGCTTTGGGTGGTTGG
TGTTCTGGAACGTACTTTATGGACGTCTTGCAGTAGTCTATGTATAATAA
CAGCGGCGGTGGCGGTTGTCTCAGCCGCCACTTAAGTCGTGTTCTGCAAC
TTGTGTGTCAGACAAAGCGAGTGTCGTCCCCAGTGTCTGTGAAACGGGTA
TAAGCATCTGAATAAAGCGCAGAGAAGTGCTTGGTCTGGTTCGCTGAATC
TTCCAAGGTTGTCTCCTGAGCAGTGGGTACATCAGTATAAGAGCGATCTG
AGGGGTGTTCAAAACCACAGCCGTGTGTGCCCATGTGCACGGCTGGTGTC
AACAGCGTCAGCTGGGCCGGTACGGACATCAAAGGGCACCGAGCAGAGAT
GAAATCATTCTTTTACTGTGAAGGCAACAACATCAGCAACGATCTGATCG
GTAAAGGCTAAAAACCATGAGACTGCTCAGTCTAATCTGCTGATTGTGTA
AGGCAACAACATCAGCAACCATCTGATCGATAAGCATAACCATCAGATTT
ACTCAGTCTAATCAGCTGACTGAATTGTCTACAGCACACCAGTGGTTTTG
CCATCATCGATCACCATCCTCATCACATCACGGTTGATACCCCCTCTGCC
TGTGTGCCAGCAGGAGCCAACAAGGCGGAAGCCTGGACGTGGTGTGGCAA
GACAAACTGAGCATCTCGAGACACATCTACGAGCGAGGCTCCATCGTCGT
CTTCAGGTACACACAGCAGTACATACCTACAGCAACCAAAATACGCTGCA
GCTCTCATTACACTTACCGCCCGCACTTGGTACTATGCAAGAAATGCAGG
CTCAAAACAAGAGAAGTTCAAGACCTTGACCATAAGAACAGGTCTCAGTT
TAGTATCCTACACTAACACCCATATTGTCGCTGTCTGGAGTAGTCTACCC
CTTAAAGAAAACAAGAAGCGATCCTCGGGTTAACTTAAGACATAAGAGGT
TCTTTATCGCGGGCGCTACCAGTACAGTATCTGTGTCATTTACCGTCAGT
GGTAAGATAAGAAAGTAAGAGGTTCTTAAATGCGGCGCTGCCAGTACAGT
ATCTGTGTCATTTACCGTCAGTTCAGGCGGCACCAGGTATCATGCTCTGT
TGTGCGTATGATACCTCCCTCACCTTTGCGGAATACTGCTGTAGCTGTGT
AACGCCCAAAATGTTATCAAGGGTGCGGTATCTATCTTCGGTGACGTTGT
ATGCATCCAGACGGTCTGTGACGCCAAATAGGCCTAGACCACCGTAGCCA
AAGAGCGAGTGTCTGCAATCTGTGCGTACATGTTGGCACCAGCAAAAATT
AGTGGTACTTTGCCACCGACACTCCATTAATGACCAGCCAAGAAGCTGCC
CTTTGCTCGACCAAAGCCCAGCGCGATCGGTTCCACCCCGACCACGACTC
TCCCGCTCGCGTCATCGTTTCACCCAATGATTGATCGCGCTATCTTGAAG
TTCCCTCCCCCCCGCGGCCATGGGTGTTGGTGGAGCCCTCCTCTTTTAGA
TTAGCCGCTGTTCGGCCACAATGCAGCAGCAGCAGCAGCAGCAGCAGCGG
CAGCAGTCATGGCTCTCCGTCATGTTTCGTCTGAGCCGCTTCTGATGTGC
ACCCGCACACCCCAACAATGCATCAGAATTCTGTAGCGACATGAGACATG
CGTCGGCGCTGCCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTNNTTGTTTTTTCTCACATTAACTCTATAGTCCACAAAAAATGG
GAAGCCCGTGGTCTCAAAACCCGGCACATACGACGCCGCGGGGAAACAAA
ACAAAAATAGGGTACAAACCACTCGGAAAAAGAAAGCAAAATGATAGAAA
GAAAATAACAGGTATCGCACAGACCGTTCGAGAAAAGAGCCCCCGGAAAC
CGATCAAAATAGAACAAAAAACAATAATAAAGGAGGACGCTTCCCACACC
CGCCTAAAGAAAACATCAAGGGTAACGTACCAGCACCAGGCACTACGCAC
CAGGGTATGGGAGTAACGGAGAAAACAGGACAAAGAGGCGGCAGATGGGC
AGACAGCCAGATGTACAAAAACAAAAGCAAAAGCAAAAGCGAGATAAAGG
TATCCAACACAGCGGAGTAGGCAGGGAGGTCATGAAAAAAGAAACACAGC
ACAGAGGCCGAAGGCAATACAAAGGACATACACAAAGGAGTCTAGCATAC
AGCAGGGACTATATATGTTTCTGTTTCGTTCGACCGGATAACAAGTATGG
GTACGTGAACATTATGATAGTAGTAGATAATAGTCTACACCAGCACTCAA
CGCTGTTTTGTTTTCTTATGGGAGACCCGTTTTGTTTTCTCAAATATGAA
CCGACAACCACGACTCCTTTACACTGTACGAGCAGTGCTCTTTCGATCAC
GGTTTCTCTCGGTTTGATAAATTGGAAACACCTCTCGATTTTGCGATTTC
TCACCTACGTATTCATCAGGACCTCCATACTCCAAGTAGATATGGCCACC
ATTCGCTCTTTTCTTATGATGGCCATCCTCCAAGTAGATATGGCCATCAT
TCCCTCGTTTCTCACCGTAGTCCCATTCATTCCCCACTAACATTCGAGCG
TACTCCAGATATATATTTTTTTCATGTTCCACACCATGTCAAACTCGCCT
TTACCCCCGACGGAGACTCGCGCTCTGCTGCCTGCGTTCGTGTAGTCTAT
CTCGCTCAGAATGGAGTTCGGTTTGTTTTCAATTGCGTTCTTGGCGAACG
GCTGTAATGCCGGCGTTTATTTGCTCTTTAGCTTCAACTTTGCTGAGGAG
CCCCTTCAACCCAAAGAAGTGGATATTGAAATTGTGTCACATGGTTGCAT
GCCGGGCTTTGAACTGCTGTAATTCTGTTTTTTTTGTGCAGGAATCCCTT
CGACCCGAAAGAGCGGGTCGTGAAGCGACTGATCGGCGTCGATGGCGACT
GGGTGCGACCAAGGGGCAACAAGCACAACCTGATGAGAGTGCCGGAGGGA
TACTGCTGGGTAGAGGGTGACAATCACGGGGTCAGCGGAGACAGCAACCA
TTTTGGACCGGTGTGTTGGTTGAAAACCTTTGTTTGGTATGAAACATTGT
GTATGGTAGTATATCTAGAAGCTTCCGCTTTGGCATCACTATGTATTTTG
TTGTTGTCGCCAAATGTTTTTTTTTTTGCTTCGGGTAAGTGCTTGAGGTG
CTATCATAGCAGTAGGGCAATGGTCCCATGTACCATAGTCCTGTGGTTTA
TGTATAGCCCGTATACGTGTACAATGTCTTATCGCTGTTTCAGTACACCG
AAGAATGTTCCGATAATACCGTTGGTTGCGTAAGATATCACACCCCCTGG
ACGATTTCAAAGCTCGATTACTCGGCACGGAAAGAAGTGACAGTTACCGA
AGATGGCGGATTTGGAACCGTCCCGTCGAGAGCTCTTCGAACAATTGTCG
CTTTCCTTCGGCATCCTCTTGGTCGTGGAGTAATCGAGCTTTGATAATCG
GTCCAGGGGGTATGGTATCTTACGTCACCTGTACGGTGCTCCTTAGGGAG
TGCCTAGGTACTGCTGTTGACTGACATTGAAACAACACCGTGAAGAGGCG
ACTTGCCCGGTGTCGCCGTGTGGCATACCACTCTGTCTTGAAATTATGAA
TGCCATCCGGATACAAATGAGGTTGTCCCAATGGCTCGTATGTTTCCAGA
GTTGGAGGTATTTTGGGTGAGAACTGCTGTAAACCGGCATCGCTGTCCGT
TCCAGCTGCTGCTGCTGATGTGGTAGTTGTACACTTGCCGGAAAGATTGG
AGGCACAGGATTTAGTCGACAGGCTGACCCCAGTACGTCGCCACTGCTAA
CTCTTGTGACGCTTTGTGCAAGCGAACGAATATCGTCGGCGTTGCTAGCT
ACAGAAGTCCCAACCTCGTTTTGTTTGTTTTCTGTCTCCTTGTCGCTTGA
GTCTTTCGAACTGAAGCGGCCGCAAACTGACCCTCTAACCTGGCCACTGC
TGACTCTTGCCGTCGCGGTTGGTGTTGAAACAACAAATAAAAAATGGACG
CCGTCCTCAACTGCGGCTACTCGGGACTGTCAGATACCGCTGGCGCTCAT
TGAGGCAAAAGCGACCCACGTTTTGTGGCCACCAGGAAGAATGCGCAGGC
TGGGCCAAGATTTGCCGGTAATCCACCGCGGTTTGAATCCATCCCAAGCG
TGACAGAGCGGGCGCCACTTGTGCTTATTCTCTTTGTGTTCCGAAGGGGG
GGTCCCAAGGGAAGACGCACAGACGTGGTAAACAGAGGAGTATATATACG
GCTTGGGAGCAGCGATTCACTGGCGGAGTTTGGATATGACGTGCGGCTTT
TTTGCTGAGGGTACAGAAAGAGCCCATTCGCTCGTGTTCGCTTCTGGTGG
CGCACGGCTCTTGTGCTGCTAAATAAAGGTACAGGGCTACTTCGCTTTAG
CCGATCGATGTATTGGGCTATGGCCGCCCTTGATTGTTTTGTTAAAACAT
CCAACTCGAGGTGTTCATGGATGAGACGAAGAAAACGTGTTGTCGTTGTT
GTCGTGCTCATTTGCTACTTCTTCGTTCTTGATAGCTGAGAGCGCGAGCC
ATAACGTCAAAGGGTAGCTCTAAGGATAAGGGTTCGGCCCTTTTGCTGAA
CCGCTGCAAGTTTGTGATTTGACCGATGGATTATTTTCCGTGAGCGGTAT
GCCCGTATGTTCCTGCAACTGGCCAGAGTTGTCTGAATCATCCCCCCCCC
ACAGTGTTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTTGT
AAAACAAGCCGCCCCCCCCGGTGTTTGCCATCGGGAGTGGGTTTTCGTCG
CTTGGCAAGGACGTTGTAAAACAAGCCAATTCACTTCGTGAACTCGGC
back to top

Coding sequence (CDS) from alignment at Scaffold_376:86604..91901-

>EsuBft937_3a-0001 ID=EsuBft937_3a-0001|Name=EsuBft937_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=528bp|location=Sequence derived from alignment at Scaffold_376:86604..91901- (Ectocarpus subulatus male Bft15b)
ATGGCCCAGGCCGCAGCGGGTAACGTTCTCCGTGCATCACTGTTTGCCAT
GCCGGTGGCGTTGGCGTTCCATGACGTCGTAGGGTCCCCGGTGCAAGTGG
AAGGGAGGTCGATGCAGCCGGCGATCAACCCGCACTTGGGACCAGAGAGC
CAACAAGGCGGAAGCCTGGACGTGGTGTGGCAAGACAAACTGAGCATCTC
GAGACACATCTACGAGCGAGGCTCCATCGTCGTCTTCAGGAATCCCTTCG
ACCCGAAAGAGCGGGTCGTGAAGCGACTGATCGGCGTCGATGGCGACTGG
GTGCGACCAAGGGGCAACAAGCACAACCTGATGAGAGTGCCGGAGGGATA
CTGCTGGGTAGAGGGTGACAATCACGGGGTCAGCGGAGACAGCAACCATT
TTGGACCGATACCGCTGGCGCTCATTGAGGCAAAAGCGACCCACGTTTTG
TGGCCACCAGGAAGAATGCGCAGGCTGGGCCAAGATTTGCCGGTAATCCA
CCGCGGTTTGAATCCATCCCAAGCGTGA
back to top