EsuBft937_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft937_11a-0001
Unique NameEsuBft937_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_376contigScaffold_376:154460..155975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft937_11
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length52
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft937_11aEsuBft937_11aEctocarpus subulatus male Bft15bgeneScaffold_376 154460..155975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_11a-0001EsuBft937_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_376 155844..155975 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_11a-0001-exonagat-exon-34405Ectocarpus subulatus male Bft15bexonScaffold_376 154460..154603 -
EsuBft937_11a-0001-exonagat-exon-34406Ectocarpus subulatus male Bft15bexonScaffold_376 155085..155292 -
EsuBft937_11a-0001-exonEsuBft937_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_376 155750..155865 -
EsuBft937_11a-0001-exonagat-exon-34407Ectocarpus subulatus male Bft15bexonScaffold_376 155917..155975 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_11a-0001-exonagat-three_prime_utr-23243Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_376 154460..154603 -
EsuBft937_11a-0001-exonagat-three_prime_utr-23244Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_376 155085..155292 -
EsuBft937_11a-0001-exonagat-three_prime_utr-23245Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_376 155750..155843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_11a-0001-cdsEsuBft937_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_376 155844..155865 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft937_11a-0001 ID=EsuBft937_11a-0001|Name=EsuBft937_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=527bp|location=Sequence derived from alignment at Scaffold_376:154460..155975- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGCACCCTTCATGCGACTCGCCGAATATCTCACGGCGCTTCGCG
CTTGGTGATGGATGCGGGGTCAATGGTCTAACGACTACGGCATGCACGAC
TACGAGTACACCCCCCCCAACCAATAGACCAAGCCACCGTATTCGTACAG
ACTCCACCATCCCGAGAGCACGTGCAGATTATGGCGCACAGTCATACGCT
AGAGGTCCCGCCCGTCGCGAACGGCAGAGAAACGACCTAACGGGCCGCCG
TCCCTTCGAGGGGCAGTTCCGCCAACTCCGAAGTAAAGCCAAAGCCACAA
AGTCAGTGCGTGATGACACGCACACCTCCGAGCTCCTGAATCTTGTACTT
GAAGACCGAGTCCAGGCACGTGATGAAGAACTTGCCTACCTTGAGGACCC
CGAGCTCTCTGCAGTCCGTCATCGTAGATGCACCGACAAGAGCATCCAAA
CGCGAGACATCCGAAAACCGGAACAAACAAAGGAATCGCGCAAAACGGCA
CGGCAGTGCGAAGTATAACTTGTTTAA
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protein sequence of EsuBft937_11a-0001

>EsuBft937_11 ID=EsuBft937_11|Name=EsuBft937_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=26bp
MQRTLHATRRISHGASRLVMDAGSMV
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mRNA from alignment at Scaffold_376:154460..155975-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft937_11a-0001 ID=EsuBft937_11a-0001|Name=EsuBft937_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1516bp|location=Sequence derived from alignment at Scaffold_376:154460..155975- (Ectocarpus subulatus male Bft15b)
ATGCAGCGCACCCTTCATGCGACTCGCCGAATATCTCACGGCGCTTCGCG
CTTGGTGATGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCC
GGCTTTGTAGGGATGCGGGGTCAATGGTCTAACGACTACGGCATGCACGA
CTACGAGTACACCCCCCCCAACCAATAGACCAAGCCACCGTATTCGTACA
GACTCCACCATCCCGAGAGCACGTGCGTGATTGGTAGAGGCTTACCCATT
AGACTACTCAGTCAGCGCTGACTGAGTAGTCTAATGGGTAAGCCTCTCGC
TGACTGAGTCAGAAACTCCACTCAACTCTAGAACAATAGCCTCATTGGCT
AGACATCAATAACCATCCCCGATCATACCAGTTATACTTCTTCGAACTTC
AGTGAACTTGTTGCCCCCCAGCCTAGAACATCATCCATTGAGAAAAACCA
TAGGCAAAAATGTAAAATGTTGCCACCCCAGTTGTTTGATCACACACAAA
ATAAACCCGAACACCAAGATATTAATCCATACTCATCACGTAGTTACGAT
GAAACTCAAAATCTCCCGCGTGAAGTGCTTTCGTGAGAAAGTCAGCATGT
TGATACGCCGATTCCACGTGAAAAATCGAAATCTCCTTCCTGCCTACCAG
TTCCCTGATAAAGTGGTGCCTTACNGTGCGTAGAGATTATGGCGCACAGT
CATACGCTAGAGGTCCCGCCCGTCGCGAACGGCAGAGAAACGACCTAACG
GGCCGCCGTCCCTTCGAGGGGCAGTTCCGCCAACTCCGAAGTAAAGCCAA
AGCCACAAAGTCAGTGCGTGATGACACGCACACCTCCGAGCTCCTGAATC
TTGTACTTGAAGACCGAGTCCAGGCACGTGATGAAGAACTTGTTCTGCAG
CCACAAGACACAGAGAGAGATCGGTTACAGGGCAGCTGAGACCACTTCAC
AATACATAAGGGGGGGTCATGAGAAACGGTTGTGTCGGTATTGCTTCTCT
TGCCAGAGCGCTGGGTTGCCCGTGCTGTGCGCTCGCACGACACGTAGGTA
GGGTTGTGATTCACATACTAAACAACCAACAACCCACACGAGCATGTACA
GCGCAGAGGGTACTGCTGTGCAAGCTGTTGACCTGCTGGCGCACAATAAA
TTCCAAAGGTATTGTGGAGCCCCCTGCTTGAAAAGTGCTAGAGGCGCCTG
AAAGACAACCGAATGAGGTGGACGCTGTTGGCAAAAGAAGAGGCACGTCC
GCCGTGCATGGCCCCTGGCTCGTGGAAAACGTAGCAACCAACAAGGTGTG
GATTCGCCCGCTATTGGACTTGGCGGGCACTGCCACAGGGCGGCATCCAC
CCTCGCGCTGCCAACATGTCAGGCCTACCTTGAGGACCCCGAGCTCTCTG
CAGTCCGTCATCGTAGATGCACCGACAAGAGCATCCAAACGCGAGACATC
CGAAAACCGGAACAAACAAAGGAATCGCGCAAAACGGCACGGCAGTGCGA
AGTATAACTTGTTTAA
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Coding sequence (CDS) from alignment at Scaffold_376:154460..155975-

>EsuBft937_11a-0001 ID=EsuBft937_11a-0001|Name=EsuBft937_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=81bp|location=Sequence derived from alignment at Scaffold_376:154460..155975- (Ectocarpus subulatus male Bft15b)
ATGCAGCGCACCCTTCATGCGACTCGCCGAATATCTCACGGCGCTTCGCG
CTTGGTGATGGATGCGGGGTCAATGGTCTAA
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