EsuBft937_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft937_10a-0001
Unique NameEsuBft937_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_376contigScaffold_376:149120..154081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
StatusManually annotated
Seed ortholog2880.D7FXC3
ProteomeIdEsuBft937_10
Protein domainsTMhelix
Protein domainsPTHR11785
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsIPR002293
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length93
Hectar predicted targeting categorysignal anchor
Evalue3.36e-176
EggNOG OGs28KN3@1|root,2QT3M@2759|Eukaryota
Ec32 ortholog descriptionAmino acid/polyamine transporter I
Ec32 orthologEc-04_000070.6
Date last modified2016-11-15
Date creation2016-06-14
Descriptionuncharacterized cationic amino acid transporter
DescriptionAmino acid permease
COG categoryS
NoteSplit gene should be merged with EsuBft937_9
NoteKleinjan H., annotator
Cross References
External references for this mRNA
DatabaseAccession
TCDB2.A.3.3
GO0016020
GO0015171
GO0016021
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft937_10aEsuBft937_10aEctocarpus subulatus male Bft15bgeneScaffold_376 149120..154081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_10a-0001EsuBft937_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_376 149126..154081 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_10a-0001-exonEsuBft937_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_376 149120..149344 +
EsuBft937_10a-0001-exonagat-exon-34401Ectocarpus subulatus male Bft15bexonScaffold_376 151064..151219 +
EsuBft937_10a-0001-exonagat-exon-34403Ectocarpus subulatus male Bft15bexonScaffold_376 151564..151816 +
EsuBft937_10a-0001-exonagat-exon-34404Ectocarpus subulatus male Bft15bexonScaffold_376 152108..152222 +
EsuBft937_10a-0001-exonagat-exon-34402Ectocarpus subulatus male Bft15bexonScaffold_376 153898..154081 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_10a-0001-exonagat-five_prime_utr-15112Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_376 149120..149125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft937_10a-0001-cdsEsuBft937_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_376 149126..149344 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft937_10a-0001 ID=EsuBft937_10a-0001|Name=EsuBft937_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=933bp|location=Sequence derived from alignment at Scaffold_376:149120..154081+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACTCCATGTTGGCGATAATGGCCAAGCGGGTCGGGTACTGGGCCGGGGG
GTGCCTCGGCTTACCTACCCCGGGGTTGGACCTTGGCGAGGTGTTCGCAT
TCTGGGTGTCGCTTGACGCCTTCGTCGTGCTGTCGGGGGCGGTGTTGACG
GCGTACGTGGGCATCAGCGGTCTGCTGGCGAGGATGGCCAAGGACCGCTG
CCTTCCACAGTTCATGCTCAGGAAGGGGGACATCACGACCTTGTCAGGCG
TGTACACGTTTTCATTCTTGGGGGTGATGACCCTCTTTTCCGTCGGCACG
ATCCTGCTCAAGTTCAAGAGGCCCTCGCTCCCGCGAGAGGTCACGGTCAG
CTACGCTACCACCCTCGTCGGGATTACCTGTGTAATTACCGCATTCGTTG
GGAACATGCTGAGCAAGCCCGAGGTGGTGTCGTGGTTCCTGATCTACTTC
ATGGCGGTGGGATTCGTAGTTGTCTTGGTTTTCCTTCGGGTGCGGCTGCT
CAAGATCTTGCTCAAGTTCGCGCAACCCGTCTGCTGCGGTGGGAGGACAT
TTTTTTTTTTTCAAACTCGATGTGGGTTGGCCAGGCGTTTTTTTCCATCC
TTCAGTATTCCTTATGTTTTCTTGTTCTCCGAAGATGGTGTTACGTCGAG
CATAAAGGACCAGCTTCACGAGCTTCAAGACGAGCCGTTCGTGTTCTTTT
GCAAGCAACCAGATACGTACGTCATTAACAAGGCCATTCTATATGTCAGG
GACAACGAGCACACAAATAGGCTAATCGTGGTGCACTGCTCCAACGATGT
CGAAGGAGCGACGATCAAGACGTTATCCAAGCACATCGAGATGTTCGACA
CCATGTACCCGAAGATCAAGATCAGCTTGTTGACGGTGACCGGTAGCTTC
AGCCCCGGAACCATAGACTGGTTATCCCAGTGA
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protein sequence of EsuBft937_10a-0001

>EsuBft937_10 ID=EsuBft937_10|Name=EsuBft937_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=308bp
MLAIMAKRVGYWAGGCLGLPTPGLDLGEVFAFWVSLDAFVVLSGAVLTAY
VGISGLLARMAKDRCLPQFMLRKGDITTLSGVYTFSFLGVMTLFSVGTIL
LKFKRPSLPREVTVSYATTLVGITCVITAFVGNMLSKPEVVSWFLIYFMA
VGFVVVLVFLRVRLLKILLKFAQPVCCGGRTFFFFQTRCGLARRFFPSFS
IPYVFLFSEDGVTSSIKDQLHELQDEPFVFFCKQPDTYVINKAILYVRDN
EHTNRLIVVHCSNDVEGATIKTLSKHIEMFDTMYPKIKISLLTVTGSFSP
GTIDWLSQ
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mRNA from alignment at Scaffold_376:149120..154081+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft937_10a-0001 ID=EsuBft937_10a-0001|Name=EsuBft937_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4962bp|location=Sequence derived from alignment at Scaffold_376:149120..154081+ (Ectocarpus subulatus male Bft15b)
CACTCCATGTTGGCGATAATGGCCAAGCGGGTCGGGTACTGGGCCGGGGG
GTGCCTCGGCTTACCTACCCCGGGGTTGGACCTTGGCGAGGTGTTCGCAT
TCTGGGTGTCGCTTGACGCCTTCGTCGTGCTGTCGGGGGCGGTGTTGACG
GCGTACGTGGGCATCAGCGGTCTGCTGGCGAGGATGGCCAAGGACCGCTG
CCTTCCACAGTTCATGCTCAGGAAGGTCGGTTGTGTTTGTTGCTGGCTGT
TTTGTTGATGATGATGCTGGTGAGGGTGTTGTTGTCGTTGTTGTTGATGA
TGTGGTTAGTGATAATGTTGTTGCTGTTGATAGTGTTGTTTTTGTCGTTC
TTGATGTTGTTGCTGGCTTTGCGTGAGAGACGCTTACACGGCCACCGAAG
CTATCCGTTCGTTCGACCAGACACGACTTTCGGGGTTACATCCAACCGAC
CACAGGTTACGGGAAATGCACATACGCAAGCAAGATAGCGCATGATCGGC
CTATTTATACAATCCCGGCCAAACGCCGCATGGTAGGTGTGGTAGGCTCC
CTCCCCTCCCCCCCTCTCTTTTCTGTTTTCACTGCTTGTTTTCGTTTGAG
ACATGGGTTGTGGGTGAACCAGCCCAGACGTGATGTGGCACCACCACATT
TGTCTGTCTTCATGTGCTGTGCAACGGCATTGGTCTGGCTTCATGTGCCG
CACGAACACATTCGTCTCTGTTCTTCCAGCTGCTGTAGCGTAGCTTCCGG
TTTTATCCCTCACGTGTGTGTCTTTCTGAACCTTGTGACACCTTGTGATA
CGACCGGACTGTTGTGCATTCTCGCGCTTGTGTTTTGCATCCGCCGCCCC
AGAACAAGTGGAGAGGGACGTACCACTACATCATCTTCGGGTTCTTCTTG
CTGGCTACAAGTCAAGTCATCATCCTGCAGGTAACCCTAAACCCTAACCC
CAACCCCAACCCCAACCCCAACCCTAACCCTAGACTACATCTGCTAACAA
CGTAGAACACGTTTACTATAACAAAGGTGGGTGTGTTTTGTTGTTGCGTC
GACCGCTAACCGGCTGACCGATGAAACTACGTAATTTTCAGCGATTTCGT
CTCACGTATCTAGAGGCCAGTGTACATGGGAAGTGCGTAAGTGTGCTTTC
CCCCCCTCTACGGTGTTAGTTTCAATGATTACTCCGGTTGCCAGCTAGTG
TGTTTCGTTGCGGGATAAGTTCCGGCGCGGGATGACGCCCCTTTGCTGAA
TGACGTCCCGGTGCAGAGTGACCAATGGTAAGTGAGTTCCCTTCGCGGAA
TGACGATTTTTCGCGGAATGAATCACTGGTGTCGAGCACGTCCGGTTGGA
TTTTCAAAGCTCTAAACGATATGGGGAACGATCGGAGGTTTGCAGCCCTC
ATGGTATCATCCCGCGGCAACCTCCTGGCAACTCCCCTTCTCGACTTTGC
TCCACCGTCTTTTTCAGCTAGAGTACCTAATGCTGACAGCACTAGAGTGG
AGTGAGAACCAGCACCGCGCCATGATTGGTTCCTTCTTGATGTCTGCCTG
GCCGAGTTGTCCATCGTCAATTGCTCCTTTCTACGGTTGTCTCCCGAAGG
CTCGTTTGAGATACTCATTCCGCTGACAATTTTTGTTCATTCGCGATACG
TCGTGTGGTCGTTGTTGTCGGTGTCTTCACACAAACTACCGTGCCGGGCT
CGGTCCTCTACCTCATCATCTACCCATCTGTGCTCATGTTCCGTAACTGC
CGCACCCTTGAAAGGCGTCGACGCCCGGTAACTAGTACGATTCACTTTTG
AATCGTGACCTACGCCAGCAACAACAGCGTCTCAAGGTGTCTATTTTCGC
CGTACGTGCTATTTTCGAGCACGGCCAAGCGTCAAGACCACAAGCTTATC
AAGACAAACGTGCCGCTGTTGTTCCGATCGCTCCTTTCCCCCAGGGGGAC
ATCACGACCTTGTCAGGCGTGTACACGTTTTCATTCTTGGGGGTGATGAC
CCTCTTTTCCGTCGGCACGATCCTGCTCAAGTTCAAGAGGCCCTCGCTCC
CGCGAGAGGTCACGGTCAGCTACGCTACCACCCTCGTCGGGATTACCTGT
GTGAGTCCGGTACTGCTTGTTGTTGTTGTTGATGTTGTTGCCGTGGTAGT
CTGGGCTGACGCTACCACCCGCATAGGTCGGAGCTGCCTGCGTGAGACCG
GGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGAATGTTGAGTTGTTGG
AGGCCGTGTTTATTTTGGTTTCTATGTTCCTGTTCGCGAAAATGACCGCC
ATTTCAACCACCATTCATATGTCTTTCTTGCGTGTATATATTACGGTCGT
GTAAGGTTAAGCGTTTCTCCGGCACCACCTTGCAACTGCCGATTATCATT
CAATTTCATCCCTTCGCTTGTCTTCGTTTGCGATGAACACACAGGTAATT
ACCGCATTCGTTGGGAACATGCTGAGCAAGCCCGAGGTGGTGTCGTGGTT
CCTGATCTACTTCATGGCGGTGGGATTCGTAGTTGTCTTGGTTTTCCTTC
GGGTGCGGCTGCTCAAGATCTTGCTCAAGTTCGCGCAACCCGTCTGCTGC
GGTGGGAGGACATTTTTTTTTTTTCAAACTCGATGTGGGTTGGCCAGGCG
TTTTTTTCCATCCTTCAGTATTCCTTATGTTTTCTTGTTCTCCGAAGGTA
CGTCGATGTTGCCTCTTGACCTTCATGCAACGTTCGTCCGGCTACGTATC
CTTCGAGGCGGGAAGTTCCACGGACAAGTGTGAAATTGTTGAAGTGTGTT
GTGTACATTTCGTGTCGTACTGTTCGTGTGAGAACTGTCGCAGTTTTTCT
TGTGTATCACCAAAATCTGAGCCTTTTCTTCGTTGAAAGTTTTTTTCTCA
ATGGCTGGCATTAACTGTATTGGACATGCCCCCCCCCCCACCCTTCCTGT
TGTTGCTTGCTGCATGCCTAACGCATCGTGCGGATAAGATGGTGTTACGT
CGAGCATAAAGGACCAGCTTCACGAGCTTCAAGACGAGCCGTTCGTGTTC
TTTTGCAAGCAACCAGATACGTACGTCATTAACAAGGCCATTCTATATGT
CAGGTGAGGACGAAAGCCAGGTATGGTACATCGTTGCATGCCCTACTTTC
TCAAGGCATGTGACGGTGCTTGGTGCACATACCTCCGGGCCATCCCCGAT
CCCATTGTTGTTTTCTTCACGTTAAGAACCGTTCCGATCTCTCTAGTCTA
CCCAGGAACTTCAGCTGCCCGTATTGATCGAACACTTGACCAAGCGATAC
CCGTGGTCACAGGCTAACTTTTGTAATATAGTTATACTTGAAATATAACC
CCATGCTTGTCAATGAGGTACGCCCCACGAGTTTTTTGTACTAGCGGCAA
CATTTCGAAATACAGCAGTTTCACGGCCAACGTGTTTGTGACTACCAGCA
GGCGGATAGATCTTGCCGTTGTGTCATGGAGATACCGTTTGATTCCACCA
TTCCCCCGTGTGTGGTTCCCTCGGCGGTTACACGGAACTGTCGGGGGGCC
GTGGTGTACTGCGTATTGACCCGTATGGCTTCTTCAAAGTACTGCTGTTC
ACTCATGGTGTGGGTTGGTACAAATGCTGAAGTTTTTCTGCTACCTTCAG
GGATAGGGGTAGGGCGGGGTTGGTCTGATGCGTCCAGAATTTCCTCCGTT
GTGAATGGGAGTTTATTTTGTCTTTCGACGTGTCGTTGGAATTGCCGTCG
AAAGAGATTCGTGGATGATATTGACCCCTGCTCGTGAACAACGCTCCAAC
ACCGGCAGAGATTGAAACGTAGACACCGTGGCACGTTTTGGTACCAGCCG
TATGCTGTCGTTGTCGACGCACAGCAGTGCCTTGCGTTTTATGCCACCCC
AGTGGGCATACGACTCGGCTACTCAAGCACCTCCAAACGAAAAGAGAAGG
GGTTACCCTTGGTAATACAAGATACCCCCAGGATCGATTTTCAAGGCTCG
ATCACTCCACAGCAAAAAAAAGTGGCGGCGCCGAAAATGACGGTGTTGCA
ACGTTTTCGTCGACATCTTTCCGAAAACGTATTACTTATTTGATTTTGTC
ATCTTGTGTCACCTGCGGTGGAGAGGCATGTAGCTGCTGCTGCAGCAGCA
GCAGCAGCAGCAACGCCGGCTGGCGTGAAGGAGCTGGGTAGACTCCCTCC
GCATATGTTGGACAGGTTCAAACCAACGCAAGCACTGAAGCTGTTTCAAT
GTTATTGAAGCTGTAATGATATTGAAGCTGTTTCAGTGCCTGTCTTGCTT
CGATTCCGTCCGGCACACCTGTAGAAGGTCTATGGCCCAATCCGACGCGC
TGACCGGTGCCGTTCGTGCTGCCGCAGTTCACGCTCTCTCGGCCCCTCCC
TTTCCCTTCGGAGGTGGTGGGACGTGGTGAAGTGTAGCCTGTTGTTTCGT
TGGGGCGGTGTAGAAATGGACAAGGCACTGTGCGTTGAGGAAAACGGAGT
CCTTTTTTTTTTATGCGTTGTTGTACAGGCCGCAAGGCAAATCGAAACTT
GGTGAAAGAAGAGTATGGTTGCCCTGTTTTGAAATCTGATTGCTTATTGA
TACGGTTTACCTCGTGATCAGTACGATTCATTTTTTAGCCTTGGTAGACC
GCATCCGCAAAGTATTCATTCTGGTGCCAAACAAGAGAAAACGCAAGTCC
TTGCTTTTTTGTCTTATCTGATGCTAGGTATTCTACGTGACGTTGTTGTT
CTCGATGCCCGTACTTGTTGACCTGCAGGGACAACGAGCACACAAATAGG
CTAATCGTGGTGCACTGCTCCAACGATGTCGAAGGAGCGACGATCAAGAC
GTTATCCAAGCACATCGAGATGTTCGACACCATGTACCCGAAGATCAAGA
TCAGCTTGTTGACGGTGACCGGTAGCTTCAGCCCCGGAACCATAGACTGG
TTATCCCAGTGA
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Coding sequence (CDS) from alignment at Scaffold_376:149120..154081+

>EsuBft937_10a-0001 ID=EsuBft937_10a-0001|Name=EsuBft937_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=927bp|location=Sequence derived from alignment at Scaffold_376:149120..154081+ (Ectocarpus subulatus male Bft15b)
ATGTTGGCGATAATGGCCAAGCGGGTCGGGTACTGGGCCGGGGGGTGCCT
CGGCTTACCTACCCCGGGGTTGGACCTTGGCGAGGTGTTCGCATTCTGGG
TGTCGCTTGACGCCTTCGTCGTGCTGTCGGGGGCGGTGTTGACGGCGTAC
GTGGGCATCAGCGGTCTGCTGGCGAGGATGGCCAAGGACCGCTGCCTTCC
ACAGTTCATGCTCAGGAAGGGGGACATCACGACCTTGTCAGGCGTGTACA
CGTTTTCATTCTTGGGGGTGATGACCCTCTTTTCCGTCGGCACGATCCTG
CTCAAGTTCAAGAGGCCCTCGCTCCCGCGAGAGGTCACGGTCAGCTACGC
TACCACCCTCGTCGGGATTACCTGTGTAATTACCGCATTCGTTGGGAACA
TGCTGAGCAAGCCCGAGGTGGTGTCGTGGTTCCTGATCTACTTCATGGCG
GTGGGATTCGTAGTTGTCTTGGTTTTCCTTCGGGTGCGGCTGCTCAAGAT
CTTGCTCAAGTTCGCGCAACCCGTCTGCTGCGGTGGGAGGACATTTTTTT
TTTTTCAAACTCGATGTGGGTTGGCCAGGCGTTTTTTTCCATCCTTCAGT
ATTCCTTATGTTTTCTTGTTCTCCGAAGATGGTGTTACGTCGAGCATAAA
GGACCAGCTTCACGAGCTTCAAGACGAGCCGTTCGTGTTCTTTTGCAAGC
AACCAGATACGTACGTCATTAACAAGGCCATTCTATATGTCAGGGACAAC
GAGCACACAAATAGGCTAATCGTGGTGCACTGCTCCAACGATGTCGAAGG
AGCGACGATCAAGACGTTATCCAAGCACATCGAGATGTTCGACACCATGT
ACCCGAAGATCAAGATCAGCTTGTTGACGGTGACCGGTAGCTTCAGCCCC
GGAACCATAGACTGGTTATCCCAGTGA
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