Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LQB1 |
| ProteomeId | EsuBft936_8 |
| Protein domains | IPR005635 |
| Protein domains | PTHR13142 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 137 |
| Hectar predicted targeting category | other localisation |
| Evalue | 5.2e-28 |
| EggNOG OGs | 29Q2T@1|root,2RX7J@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Inner centromere protein, ARK binding region |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft936_8a-0001 ID=EsuBft936_8a-0001|Name=EsuBft936_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1376bp|location=Sequence derived from alignment at Scaffold_350:184149..188015- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGAAGCTGTTCAAGGCAAAGGAGATCCAGGTGTTTTACGACAATGG
CGGAGGCAAAGAGGAGGAAGGAATGGGAGACAGCGGAGACTGCAGTGACA
ACAGCGAGGGGGAGGACGAGTACTTCATGTCTGATGAGTCGGGTTCGGAC
GACGAGGATAACGACCCGGCACTCAAGAAACTTGAATCAACCGTTGTTCC
TGAGTGGGCTACGAACGAGGGCATTGCGGAGGCTTTGGAGAGGCAGTACG
GCGGTGACAAGCCCATCAACCCCAACAAGATCTTCGTAGACTTCTACACG
TGCAGCCTCGAGACCATTTTCGACACGAACAAGAAGAAGTGGGACCGCAA
GAGCACGGGCGACTGGATGTCGGACAGGCTGACGATCGCCGAGAAGCTGG
CGTACGACAGGGCCATGGGATACGTCACCATCAACACCAAGGGCAGCGGA
GACAGGAGGAGGAGCTCTAGGAGGAGCTCCAGGAGGGGGTCCAAGAAGGG
CTCTTCGTCTTCTCAGGGCAGCAGCACCAGCAGCTTGAACAATTCCCACA
GGAACGAGTAGCGAGCGAGCGAGCAGCCTTGCTTGTCGTACCGATTGCAC
CCTTTATCGGCTGTCTTTTTATCGCGGCTTGCTGACGATGCTTGCGTGTA
TTGTAGTCATCAGCAGTAGGGGACTGTACCCTCTTTTAGCTATTTCGGGA
TTTACGTATTTTCCCTTTTGTGGCTGCTTTCTGGCGACAGAATTGCCGGC
CACTAGCAGCTGAAGCAAGGCATCTGTAGTGTAGGAAAGCTAGCTCCAGG
ACAACGGAGCTCGCGCAACGTTCACATTCTTTGGAACGGTTCCTGTTGGA
TTAGGGTAGTGCATTAGGTCGTGTTTTTTCTCAACTACTTATTGTCCGCG
TTCCCCTCGTGGAGGGGGGGGGCAAGTGAATATTGTTGTTGGCGGATATT
TTTGAAAATGTTCCCCCGTGTTTCATTCGAATCTTTTTCTAAGAACCCGC
CGTATGGGCAAAGGGAGGGCGGAAGGAAGGGTTTGTTGGGCAGGGCGGGG
GGGCCTCAAATTGTACATGTTTTTTCTCCTTCCTCCGACTAGTGTTTCGG
CCACTTTCTTTTGTCCGTCGGGCAAATGAGTTTCGTTTCCTGCCGTGACA
GATAGATTCATTCTGATACAAAAAAACTGCCCGTGGTGTGCAGGTAGACA
TATTAGCATAGGTATTTTCGTTTCGATCGAACAAGAAAAAGCAACACGCG
AGCATGTACGTAGGTGTTGTTTTGAGAGCTTGCGGCTGTGAGCAATATCT
CACAGGTCGCAGCTGAAACCAAGCCAAGGTTTCACTTAGTAGGCTAGATC
TTTGTCTGCAACATGGTGATAAAGAC back to topprotein sequence of EsuBft936_8a-0001 >EsuBft936_8 ID=EsuBft936_8|Name=EsuBft936_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=186bp
MKKLFKAKEIQVFYDNGGGKEEEGMGDSGDCSDNSEGEDEYFMSDESGSD
DEDNDPALKKLESTVVPEWATNEGIAEALERQYGGDKPINPNKIFVDFYT
CSLETIFDTNKKKWDRKSTGDWMSDRLTIAEKLAYDRAMGYVTINTKGSG
DRRRSSRRSSRRGSKKGSSSSQGSSTSSLNNSHRNE back to topmRNA from alignment at Scaffold_350:184149..188015- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft936_8a-0001 ID=EsuBft936_8a-0001|Name=EsuBft936_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3867bp|location=Sequence derived from alignment at Scaffold_350:184149..188015- (Ectocarpus subulatus male Bft15b)
ATGAAGAAGCTGTTCAAGGCAAAGGAGATCCAGGTGTTTTACGACAATGG
CGGAGGCAAAGAGGAGGAAGGAATGGGAGACAGCGGAGACTGCAGTGACA
ACAGCGAGGGGGAGGACGAGTACTTCATGTGAGTGAGGGCTTGCCATGCA
TAACCCAAGAAAATACAGTATCGCAGGAAGCAAGATTCACTAGCAAGAGA
GATTCGACCTTGTTTCGTGCTTGATAAAAATAAGTGTATTTCTACTGGAA
CGTTGCTTTGCCGTAGACCAGTGACTGGCGTCTAGCGAAAGGTTGTAGGC
TAATCTCATTGCTGCCTTCATCCATACTATATCACGACGACAAGCTCTAC
CTGGCAGATCGGTACATGTATTTCCTCTTTGTATCGAGGGAGCGGCCGGC
ATGTTGGGATGTTGCGCGCTCGCTACCTCTCGACTTTAGTTTGCCGTCAG
ATCAAATCATGTTCGTTTATTGCACAAGCAGTTGGTACCTTGGCCTTTCG
CTGATGACTCTACCACTCCCCCTCCTTTCTTGTTGCGCAGGTCTGATGAG
TCGGGTTCGGACGACGAGGATAACGACCCGGCACTCAAGAAACTTGAATC
GTGAGTTGTGCTCTCGAGATGTTTTTTTCTTTGCTTGCCATGCTTTTTGG
TTTGGACGGACGCATGGCAAACATAAAGATAAAGATGCATAATACGACAT
TGCTGTTGTTGCGTACGCCCCCCCCAACAGAAGACACAGAGAGTAGAACA
ACCTGAAAAGCTTGCTGACTGGAACTGTTATCCCGAATAAATTAGTCTGT
GCTTGGTTTCATTCGTGTTTTTTCCACCAAGAACGACTTTTCCTGTACTT
GGGCCACCCGCTTCTGGTCGTCCTTGTTCAAGCACACCGAGTGTTTTTTC
TTGGCCCTCGAGGGCAAGTGCATGTTGCCTACCACCTGCACACTAGTATT
CATCTTCTCTGTTGGCACACTTTGGCGTGATTGGTGCCAGCAGCTAGCTC
CGTACGGTGGACATGGAGGGATAAAAACCACCGTGACGCGATGCTTGCGG
TGTGGGCCGGTGGATTGTATCATCGCGCTATTGTACATCTCACCTCTACG
ACGTTACGGCCTCACTACCAACCAAGTACCCAGCAATGGGTTCCCTTTTG
TAATTGTCTTGCTTTGATTTCCTATCAACTATCCTCCTGCAAGTTATGTG
AAGACGAAGATTTCGTCGGCGGCAAGTTGCCACCCGAAACGACATTTTGC
AACGATAACATCATACAGCACAACGACGAAGGACTTGGAAACAACAATCA
GAATTTAAGAAAGCCACCACACCAGAACACAAAAGATATGTTGTGTAGGA
TGTCATGCATTGCGTTCGTTGAGCAGGGTGCAGGGCATCAACGAAGAGCT
TCACAAAATCGAAAGACTGTAGAGATATCGCCCCGCCTCTGTCTTTGAAA
ACAAACAAGATAAGAACGACGTCATATTTGAGACTTTAACGGTAGCAAGA
CGTGCCTGGGTCGGGTGGTGGTAACTCATCCTAGTTTTCTTTTTTCCTTT
TGCTTCACCCTTATTTGTCAACATCACTCGATGCCGTGGACGTGGTAGGC
AATCGAAGCACTCCGAACGCTTCGACAAGAACAATTAAACGCAGCGTTTC
GTTTTTGCGTTTTTCGTCTCGAGCCCTATTCCCCCCCTTAATACCCCTGT
TCTCCTTATCCTGGGAATTTTGGTCTCGTCCAGGGTAAGTAAGCCACAAA
CGAGTAGTGCTTCTAGCTTGGTTGCAATGTCTCGACATATTGTTAATGTT
GGTACCATATACACGACCCCTCCCCTTTGTAAATTTGCAGAACCGTTGTT
CCTGAGTGGGCTACGAACGAGGGCATTGCGGAGGCTTTGGAGAGGCAGTA
CGGCGGTGACAAGCCCATCAACCCCAACAAGATCTTCGTAGACTTCTACA
CGTGCAGCCTCGAGACCATTTTCGACACGAACAAGAAGAAGTGGGACCGC
AAGAGCACGTGAGTCAGTCACGGTCACAGTGCACGCCTTCTTACATTTTC
TTTTGACGTACGATTGCACGCGTAGAATACCATGGTGTTATCGTTGTACC
GTAGGTGGCATGCAGCAAGATATCACACCCCCTGGACCGATTTTTAAAGC
TTGTTAACTCGGCTGGGAAAGCAGTGGCGGTGCCGAAAATGGCGGGGTTG
GAATCGTCCCTTCGAGAGCTCTCCGAACACGTATCGTTTGCCTTCGGCAT
CCTCTTGGTCGTAGAGAAGTCGAGCTATGAAAATCGATCCAGGGGGCGTG
GTATCTCATGCAACCTACGGTAGTCAGGTGAAGGATTGGTCCATTGCGAA
CACGAGGAGCGCGAAACTTCTCGAGGTGGTTCGGAACTTCAAAAGACCGG
CAGTAATTGGCAAGCATGGCTGATTCGCGGAAGGTATCCAAAAGCTCATC
GATTGCCAGCATCAATAAATCCCAGTTGCTTTGAATCACACACCCTTCTC
ACGTTTGGAAACAAAGGTGTTTGTGCGTGTACGCGAACGTTATTAGAAAT
CGTCGATCGCGCTGTCCGGCTGTTGAGTAGTGCAAAGAGCATCAGTGCCA
GAGGGAAAAATCAAGGTCCCTGCAAGGGGGTCGAAATTCGAAAAATGCGC
AACGAGCTGGAACCGAATGCCAAGGCAAGTGTGTGGTGTGAGTGACTAAT
GTTGTTTGGACGTCAGCTAGTTTGTGCTATGATACGCCTCTGTGTGCGTT
TCCAAACACCAGCCGGGGTCTAACATGCCGACTTCCACATTTTCGCTCCG
TTTCGCTTCACCCACGTGTTCTTGTACATGCTGTGCTTGTTTCTCAGGGG
CGACTGGATGTCGGACAGGCTGACGATCGCCGAGAAGCTGGCGTACGACA
GGGCCATGGGATACGTCACCATCAACACCAAGGGCAGCGGAGACAGGAGG
AGGAGCTCTAGGAGGAGCTCCAGGAGGGGGTCCAAGAAGGGCTCTTCGTC
TTCTCAGGGCAGCAGCACCAGCAGCTTGAACAATTCCCACAGGAACGAGT
AGCGAGCGAGCGAGCAGCCTTGCTTGTCGTACCGATTGCACCCTTTATCG
GCTGTCTTTTTATCGCGGCTTGCTGACGATGCTTGCGTGTATTGTAGTCA
TCAGCAGTAGGGGACTGTACCCTCTTTTAGCTATTTCGGGATTTACGTAT
TTTCCCTTTTGTGGCTGCTTTCTGGCGACAGAATTGCCGGCCACTAGCAG
CTGAAGCAAGGCATCTGTAGTGTAGGAAAGCTAGCTCCAGGACAACGGAG
CTCGCGCAACGTTCACATTCTTTGGAACGGTTCCTGTTGGATTAGGGTAG
TGCATTAGGTCGTGTTTTTTCTCAACTACTTATTGTCCGCGTTCCCCTCG
TGGAGGGGGGGGGCAAGTGAATATTGTTGTTGGCGGATATTTTTGAAAAT
GTTCCCCCGTGTTTCATTCGAATCTTTTTCTAAGAACCCGCCGTATGGGC
AAAGGGAGGGCGGAAGGAAGGGTTTGTTGGGCAGGGCGGGGGGGCCTCAA
ATTGTACATGTTTTTTCTCCTTCCTCCGACTAGTGTTTCGGCCACTTTCT
TTTGTCCGTCGGGCAAATGAGTTTCGTTTCCTGCCGTGACAGATAGATTC
ATTCTGATACAAAAAAACTGCCCGTGGTGTGCAGGTAGACATATTAGCAT
AGGTATTTTCGTTTCGATCGAACAAGAAAAAGCAACACGCGAGCATGTAC
GTAGGTGTTGTTTTGAGAGCTTGCGGCTGTGAGCAATATCTCACAGGTCG
CAGCTGAAACCAAGCCAAGGTTTCACTTAGTAGGCTAGATCTTTGTCTGC
AACATGGTGATAAAGAC back to topCoding sequence (CDS) from alignment at Scaffold_350:184149..188015- >EsuBft936_8a-0001 ID=EsuBft936_8a-0001|Name=EsuBft936_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=561bp|location=Sequence derived from alignment at Scaffold_350:184149..188015- (Ectocarpus subulatus male Bft15b)
ATGAAGAAGCTGTTCAAGGCAAAGGAGATCCAGGTGTTTTACGACAATGG
CGGAGGCAAAGAGGAGGAAGGAATGGGAGACAGCGGAGACTGCAGTGACA
ACAGCGAGGGGGAGGACGAGTACTTCATGTCTGATGAGTCGGGTTCGGAC
GACGAGGATAACGACCCGGCACTCAAGAAACTTGAATCAACCGTTGTTCC
TGAGTGGGCTACGAACGAGGGCATTGCGGAGGCTTTGGAGAGGCAGTACG
GCGGTGACAAGCCCATCAACCCCAACAAGATCTTCGTAGACTTCTACACG
TGCAGCCTCGAGACCATTTTCGACACGAACAAGAAGAAGTGGGACCGCAA
GAGCACGGGCGACTGGATGTCGGACAGGCTGACGATCGCCGAGAAGCTGG
CGTACGACAGGGCCATGGGATACGTCACCATCAACACCAAGGGCAGCGGA
GACAGGAGGAGGAGCTCTAGGAGGAGCTCCAGGAGGGGGTCCAAGAAGGG
CTCTTCGTCTTCTCAGGGCAGCAGCACCAGCAGCTTGAACAATTCCCACA
GGAACGAGTAG back to top
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