EsuBft936_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft936_8a-0001
Unique NameEsuBft936_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:184149..188015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LQB1
ProteomeIdEsuBft936_8
Protein domainsIPR005635
Protein domainsPTHR13142
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length137
Hectar predicted targeting categoryother localisation
Evalue5.2e-28
EggNOG OGs29Q2T@1|root,2RX7J@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
DescriptionInner centromere protein, ARK binding region
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft936_8aEsuBft936_8aEctocarpus subulatus male Bft15bgeneScaffold_350 184149..188015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_8a-0001EsuBft936_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 184964..188015 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_8a-0001-exonagat-exon-78531Ectocarpus subulatus male Bft15bexonScaffold_350 184149..185168 -
EsuBft936_8a-0001-exonagat-exon-78529Ectocarpus subulatus male Bft15bexonScaffold_350 186008..186175 -
EsuBft936_8a-0001-exonagat-exon-78530Ectocarpus subulatus male Bft15bexonScaffold_350 187416..187475 -
EsuBft936_8a-0001-exonEsuBft936_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 187888..188015 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_8a-0001-exonagat-three_prime_utr-23241Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 184149..184963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_8a-0001-cdsEsuBft936_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 184964..185168 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft936_8a-0001 ID=EsuBft936_8a-0001|Name=EsuBft936_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1376bp|location=Sequence derived from alignment at Scaffold_350:184149..188015- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAAGCTGTTCAAGGCAAAGGAGATCCAGGTGTTTTACGACAATGG
CGGAGGCAAAGAGGAGGAAGGAATGGGAGACAGCGGAGACTGCAGTGACA
ACAGCGAGGGGGAGGACGAGTACTTCATGTCTGATGAGTCGGGTTCGGAC
GACGAGGATAACGACCCGGCACTCAAGAAACTTGAATCAACCGTTGTTCC
TGAGTGGGCTACGAACGAGGGCATTGCGGAGGCTTTGGAGAGGCAGTACG
GCGGTGACAAGCCCATCAACCCCAACAAGATCTTCGTAGACTTCTACACG
TGCAGCCTCGAGACCATTTTCGACACGAACAAGAAGAAGTGGGACCGCAA
GAGCACGGGCGACTGGATGTCGGACAGGCTGACGATCGCCGAGAAGCTGG
CGTACGACAGGGCCATGGGATACGTCACCATCAACACCAAGGGCAGCGGA
GACAGGAGGAGGAGCTCTAGGAGGAGCTCCAGGAGGGGGTCCAAGAAGGG
CTCTTCGTCTTCTCAGGGCAGCAGCACCAGCAGCTTGAACAATTCCCACA
GGAACGAGTAGCGAGCGAGCGAGCAGCCTTGCTTGTCGTACCGATTGCAC
CCTTTATCGGCTGTCTTTTTATCGCGGCTTGCTGACGATGCTTGCGTGTA
TTGTAGTCATCAGCAGTAGGGGACTGTACCCTCTTTTAGCTATTTCGGGA
TTTACGTATTTTCCCTTTTGTGGCTGCTTTCTGGCGACAGAATTGCCGGC
CACTAGCAGCTGAAGCAAGGCATCTGTAGTGTAGGAAAGCTAGCTCCAGG
ACAACGGAGCTCGCGCAACGTTCACATTCTTTGGAACGGTTCCTGTTGGA
TTAGGGTAGTGCATTAGGTCGTGTTTTTTCTCAACTACTTATTGTCCGCG
TTCCCCTCGTGGAGGGGGGGGGCAAGTGAATATTGTTGTTGGCGGATATT
TTTGAAAATGTTCCCCCGTGTTTCATTCGAATCTTTTTCTAAGAACCCGC
CGTATGGGCAAAGGGAGGGCGGAAGGAAGGGTTTGTTGGGCAGGGCGGGG
GGGCCTCAAATTGTACATGTTTTTTCTCCTTCCTCCGACTAGTGTTTCGG
CCACTTTCTTTTGTCCGTCGGGCAAATGAGTTTCGTTTCCTGCCGTGACA
GATAGATTCATTCTGATACAAAAAAACTGCCCGTGGTGTGCAGGTAGACA
TATTAGCATAGGTATTTTCGTTTCGATCGAACAAGAAAAAGCAACACGCG
AGCATGTACGTAGGTGTTGTTTTGAGAGCTTGCGGCTGTGAGCAATATCT
CACAGGTCGCAGCTGAAACCAAGCCAAGGTTTCACTTAGTAGGCTAGATC
TTTGTCTGCAACATGGTGATAAAGAC
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protein sequence of EsuBft936_8a-0001

>EsuBft936_8 ID=EsuBft936_8|Name=EsuBft936_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=186bp
MKKLFKAKEIQVFYDNGGGKEEEGMGDSGDCSDNSEGEDEYFMSDESGSD
DEDNDPALKKLESTVVPEWATNEGIAEALERQYGGDKPINPNKIFVDFYT
CSLETIFDTNKKKWDRKSTGDWMSDRLTIAEKLAYDRAMGYVTINTKGSG
DRRRSSRRSSRRGSKKGSSSSQGSSTSSLNNSHRNE
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mRNA from alignment at Scaffold_350:184149..188015-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft936_8a-0001 ID=EsuBft936_8a-0001|Name=EsuBft936_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3867bp|location=Sequence derived from alignment at Scaffold_350:184149..188015- (Ectocarpus subulatus male Bft15b)
ATGAAGAAGCTGTTCAAGGCAAAGGAGATCCAGGTGTTTTACGACAATGG
CGGAGGCAAAGAGGAGGAAGGAATGGGAGACAGCGGAGACTGCAGTGACA
ACAGCGAGGGGGAGGACGAGTACTTCATGTGAGTGAGGGCTTGCCATGCA
TAACCCAAGAAAATACAGTATCGCAGGAAGCAAGATTCACTAGCAAGAGA
GATTCGACCTTGTTTCGTGCTTGATAAAAATAAGTGTATTTCTACTGGAA
CGTTGCTTTGCCGTAGACCAGTGACTGGCGTCTAGCGAAAGGTTGTAGGC
TAATCTCATTGCTGCCTTCATCCATACTATATCACGACGACAAGCTCTAC
CTGGCAGATCGGTACATGTATTTCCTCTTTGTATCGAGGGAGCGGCCGGC
ATGTTGGGATGTTGCGCGCTCGCTACCTCTCGACTTTAGTTTGCCGTCAG
ATCAAATCATGTTCGTTTATTGCACAAGCAGTTGGTACCTTGGCCTTTCG
CTGATGACTCTACCACTCCCCCTCCTTTCTTGTTGCGCAGGTCTGATGAG
TCGGGTTCGGACGACGAGGATAACGACCCGGCACTCAAGAAACTTGAATC
GTGAGTTGTGCTCTCGAGATGTTTTTTTCTTTGCTTGCCATGCTTTTTGG
TTTGGACGGACGCATGGCAAACATAAAGATAAAGATGCATAATACGACAT
TGCTGTTGTTGCGTACGCCCCCCCCAACAGAAGACACAGAGAGTAGAACA
ACCTGAAAAGCTTGCTGACTGGAACTGTTATCCCGAATAAATTAGTCTGT
GCTTGGTTTCATTCGTGTTTTTTCCACCAAGAACGACTTTTCCTGTACTT
GGGCCACCCGCTTCTGGTCGTCCTTGTTCAAGCACACCGAGTGTTTTTTC
TTGGCCCTCGAGGGCAAGTGCATGTTGCCTACCACCTGCACACTAGTATT
CATCTTCTCTGTTGGCACACTTTGGCGTGATTGGTGCCAGCAGCTAGCTC
CGTACGGTGGACATGGAGGGATAAAAACCACCGTGACGCGATGCTTGCGG
TGTGGGCCGGTGGATTGTATCATCGCGCTATTGTACATCTCACCTCTACG
ACGTTACGGCCTCACTACCAACCAAGTACCCAGCAATGGGTTCCCTTTTG
TAATTGTCTTGCTTTGATTTCCTATCAACTATCCTCCTGCAAGTTATGTG
AAGACGAAGATTTCGTCGGCGGCAAGTTGCCACCCGAAACGACATTTTGC
AACGATAACATCATACAGCACAACGACGAAGGACTTGGAAACAACAATCA
GAATTTAAGAAAGCCACCACACCAGAACACAAAAGATATGTTGTGTAGGA
TGTCATGCATTGCGTTCGTTGAGCAGGGTGCAGGGCATCAACGAAGAGCT
TCACAAAATCGAAAGACTGTAGAGATATCGCCCCGCCTCTGTCTTTGAAA
ACAAACAAGATAAGAACGACGTCATATTTGAGACTTTAACGGTAGCAAGA
CGTGCCTGGGTCGGGTGGTGGTAACTCATCCTAGTTTTCTTTTTTCCTTT
TGCTTCACCCTTATTTGTCAACATCACTCGATGCCGTGGACGTGGTAGGC
AATCGAAGCACTCCGAACGCTTCGACAAGAACAATTAAACGCAGCGTTTC
GTTTTTGCGTTTTTCGTCTCGAGCCCTATTCCCCCCCTTAATACCCCTGT
TCTCCTTATCCTGGGAATTTTGGTCTCGTCCAGGGTAAGTAAGCCACAAA
CGAGTAGTGCTTCTAGCTTGGTTGCAATGTCTCGACATATTGTTAATGTT
GGTACCATATACACGACCCCTCCCCTTTGTAAATTTGCAGAACCGTTGTT
CCTGAGTGGGCTACGAACGAGGGCATTGCGGAGGCTTTGGAGAGGCAGTA
CGGCGGTGACAAGCCCATCAACCCCAACAAGATCTTCGTAGACTTCTACA
CGTGCAGCCTCGAGACCATTTTCGACACGAACAAGAAGAAGTGGGACCGC
AAGAGCACGTGAGTCAGTCACGGTCACAGTGCACGCCTTCTTACATTTTC
TTTTGACGTACGATTGCACGCGTAGAATACCATGGTGTTATCGTTGTACC
GTAGGTGGCATGCAGCAAGATATCACACCCCCTGGACCGATTTTTAAAGC
TTGTTAACTCGGCTGGGAAAGCAGTGGCGGTGCCGAAAATGGCGGGGTTG
GAATCGTCCCTTCGAGAGCTCTCCGAACACGTATCGTTTGCCTTCGGCAT
CCTCTTGGTCGTAGAGAAGTCGAGCTATGAAAATCGATCCAGGGGGCGTG
GTATCTCATGCAACCTACGGTAGTCAGGTGAAGGATTGGTCCATTGCGAA
CACGAGGAGCGCGAAACTTCTCGAGGTGGTTCGGAACTTCAAAAGACCGG
CAGTAATTGGCAAGCATGGCTGATTCGCGGAAGGTATCCAAAAGCTCATC
GATTGCCAGCATCAATAAATCCCAGTTGCTTTGAATCACACACCCTTCTC
ACGTTTGGAAACAAAGGTGTTTGTGCGTGTACGCGAACGTTATTAGAAAT
CGTCGATCGCGCTGTCCGGCTGTTGAGTAGTGCAAAGAGCATCAGTGCCA
GAGGGAAAAATCAAGGTCCCTGCAAGGGGGTCGAAATTCGAAAAATGCGC
AACGAGCTGGAACCGAATGCCAAGGCAAGTGTGTGGTGTGAGTGACTAAT
GTTGTTTGGACGTCAGCTAGTTTGTGCTATGATACGCCTCTGTGTGCGTT
TCCAAACACCAGCCGGGGTCTAACATGCCGACTTCCACATTTTCGCTCCG
TTTCGCTTCACCCACGTGTTCTTGTACATGCTGTGCTTGTTTCTCAGGGG
CGACTGGATGTCGGACAGGCTGACGATCGCCGAGAAGCTGGCGTACGACA
GGGCCATGGGATACGTCACCATCAACACCAAGGGCAGCGGAGACAGGAGG
AGGAGCTCTAGGAGGAGCTCCAGGAGGGGGTCCAAGAAGGGCTCTTCGTC
TTCTCAGGGCAGCAGCACCAGCAGCTTGAACAATTCCCACAGGAACGAGT
AGCGAGCGAGCGAGCAGCCTTGCTTGTCGTACCGATTGCACCCTTTATCG
GCTGTCTTTTTATCGCGGCTTGCTGACGATGCTTGCGTGTATTGTAGTCA
TCAGCAGTAGGGGACTGTACCCTCTTTTAGCTATTTCGGGATTTACGTAT
TTTCCCTTTTGTGGCTGCTTTCTGGCGACAGAATTGCCGGCCACTAGCAG
CTGAAGCAAGGCATCTGTAGTGTAGGAAAGCTAGCTCCAGGACAACGGAG
CTCGCGCAACGTTCACATTCTTTGGAACGGTTCCTGTTGGATTAGGGTAG
TGCATTAGGTCGTGTTTTTTCTCAACTACTTATTGTCCGCGTTCCCCTCG
TGGAGGGGGGGGGCAAGTGAATATTGTTGTTGGCGGATATTTTTGAAAAT
GTTCCCCCGTGTTTCATTCGAATCTTTTTCTAAGAACCCGCCGTATGGGC
AAAGGGAGGGCGGAAGGAAGGGTTTGTTGGGCAGGGCGGGGGGGCCTCAA
ATTGTACATGTTTTTTCTCCTTCCTCCGACTAGTGTTTCGGCCACTTTCT
TTTGTCCGTCGGGCAAATGAGTTTCGTTTCCTGCCGTGACAGATAGATTC
ATTCTGATACAAAAAAACTGCCCGTGGTGTGCAGGTAGACATATTAGCAT
AGGTATTTTCGTTTCGATCGAACAAGAAAAAGCAACACGCGAGCATGTAC
GTAGGTGTTGTTTTGAGAGCTTGCGGCTGTGAGCAATATCTCACAGGTCG
CAGCTGAAACCAAGCCAAGGTTTCACTTAGTAGGCTAGATCTTTGTCTGC
AACATGGTGATAAAGAC
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Coding sequence (CDS) from alignment at Scaffold_350:184149..188015-

>EsuBft936_8a-0001 ID=EsuBft936_8a-0001|Name=EsuBft936_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=561bp|location=Sequence derived from alignment at Scaffold_350:184149..188015- (Ectocarpus subulatus male Bft15b)
ATGAAGAAGCTGTTCAAGGCAAAGGAGATCCAGGTGTTTTACGACAATGG
CGGAGGCAAAGAGGAGGAAGGAATGGGAGACAGCGGAGACTGCAGTGACA
ACAGCGAGGGGGAGGACGAGTACTTCATGTCTGATGAGTCGGGTTCGGAC
GACGAGGATAACGACCCGGCACTCAAGAAACTTGAATCAACCGTTGTTCC
TGAGTGGGCTACGAACGAGGGCATTGCGGAGGCTTTGGAGAGGCAGTACG
GCGGTGACAAGCCCATCAACCCCAACAAGATCTTCGTAGACTTCTACACG
TGCAGCCTCGAGACCATTTTCGACACGAACAAGAAGAAGTGGGACCGCAA
GAGCACGGGCGACTGGATGTCGGACAGGCTGACGATCGCCGAGAAGCTGG
CGTACGACAGGGCCATGGGATACGTCACCATCAACACCAAGGGCAGCGGA
GACAGGAGGAGGAGCTCTAGGAGGAGCTCCAGGAGGGGGTCCAAGAAGGG
CTCTTCGTCTTCTCAGGGCAGCAGCACCAGCAGCTTGAACAATTCCCACA
GGAACGAGTAG
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