Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft936_7 |
| Protein domains | TMhelix |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | SignalP-TM |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | TRANSMEMBRANE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 172 |
| Hectar predicted targeting category | signal anchor |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft936_7a-0001 ID=EsuBft936_7a-0001|Name=EsuBft936_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1725bp|location=Sequence derived from alignment at Scaffold_350:188359..190405+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCGTTCCTCGCCATCCCCACTCCCCCTTTGGTGGTCTTCAAATTGCC
TTTCGCCGCCCCCATCCCCGTGGCAGTACCTGCTGCTGTTGCCAAGCCAT
TCGCCGTCACCCCCAGACCCCCCTTCGTGGTCACCGTGACCGGCTTCGCC
GGCTTCGCCGGGGCCGCGGCAACGGTCTTCTTCGCTGCGCTCGTCACCAC
CGACTTCGGCGACGTCTGCGGTGACCTCAACGGCGATGCTCCCGGTGAAG
ACGTCGGCGAAGCAGACCCCTGGGGTAGCCTGTTAGGCAGGAGCGGGTTC
TTGGAGAAGGATGAGGACGAAGACGTGACGGATGAAGGGGAGGTCGGCGG
AGAAGACGCCTCTGCCGCGAAATGCACCACTGCCGCCGCCTTAGTGGCCG
GCGCTGCCTTCGCCGCCGGTGCCGTCGCTGCCGTCGCCGCCGGTCGTGCT
GGCAGAGCGGGAGGGTTGGGTCTCGAAGGCTTCGGTGGCGGTGACGATGA
CGGTGAAGATTGCGGCGGCAACGACGGTGACGGTGACGGTGACGGTGACG
GTGACGGTGACGATGACGGTGACGATGACGATGCAGCCTTCGCTGGGGCC
GGGGGCGCTGTTGGTATTACCGACGATGACGGCGATGCCGCCACCGCTGC
TGCTGCCGCTGCTGCCGTCGTAGCAGTGGCCGCTCCGACAGCCGCCGCAG
GGTCCCCGTTCACCGTCTGTGGTGTGGTCGTTGAAGCGATCGGGCTCGGG
GAAGCGACGGCACTACCCCCTCTGGCGTCGGCGGCGGCGGCGGCGTCCTT
CTGCTCACCGGACGTAACCGTTTTCGCTGCTGCTGCTGCTGCTGCTGCTG
TCAGCGGGCACGCCACTCGTGCTCCAGCCGCGTTGCATTCCGGCTCCAAC
GTCTTAGACGCAGCCTTTGGGGTAGACCGGAGAGGTGGCCTACTGACGAC
GGCGGCGGCGGTGGTCGTGTTGGCGGTTGCAGCAGCAGCAGTCGCCGTGC
TGGAAGAGGAGGTGTCGACTTCGGAGGCGCCACTGGCGCCGTTGCTGGGG
GCGGCCCTTGTCTTTGTGCTCTTGCTACTACCACTACCGCTCGCGGCGCC
GGGATGCCTCGTTCTCGGCGGCGACGACGATGGCGGTGGGGACACAGCCC
CGCCCCTTTGCCACATCTTGATGATCGAAGCCACCCTGCCGGGAGACTTT
TCTTCCCCCCCGCCCGTCGAGGGCGCGGTGGACGTCGGCGTCTCGGACAG
CGGCGTCGGGGGAGCAGTGCCCGGGGTCGATGTTGCGGAACCGGGGGCAT
TCTTTTTCGCGGTTGGCGTGGTGGTGACCTTTGCGCTGACAGCGGTCGCT
GTGGCGGACTTCTTGAGGACAGGAGGTGTTCGGGGACCGGTGCTGGGAGT
CGAGCTCGAGCTCGTTGGAGTCGAGGCGGCCTTCTTCAGGTCGGGGACCA
GGGCCGGTGGCGGGGTGCGCGGGGGGGTCGCCGCTGCCGCCTGCCTAGAC
TTGCCGGCCCTGTTGCCGACGCCGCCATCACCCCCACCACCCCCAAATAT
CCTCGCCAACGCCGCCGTTTTCGGGGAGAGTCTTGCCTTAGTCGGGGATG
CTGGCGGGGGCACCGCGGAGATGTTTAGAGGCGCGGGAGCGGCTGTCGAA
CAGGTCGTCTGTCGAAAGTTCGAGGAGGAGGGGGAGGCCTCTCTGCTGAC
GACGTCACTGTTCTTGATGCCTTAG back to topprotein sequence of EsuBft936_7a-0001 >EsuBft936_7 ID=EsuBft936_7|Name=EsuBft936_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=574bp
MPFLAIPTPPLVVFKLPFAAPIPVAVPAAVAKPFAVTPRPPFVVTVTGFA
GFAGAAATVFFAALVTTDFGDVCGDLNGDAPGEDVGEADPWGSLLGRSGF
LEKDEDEDVTDEGEVGGEDASAAKCTTAAALVAGAAFAAGAVAAVAAGRA
GRAGGLGLEGFGGGDDDGEDCGGNDGDGDGDGDGDGDDDGDDDDAAFAGA
GGAVGITDDDGDAATAAAAAAAVVAVAAPTAAAGSPFTVCGVVVEAIGLG
EATALPPLASAAAAASFCSPDVTVFAAAAAAAAVSGHATRAPAALHSGSN
VLDAAFGVDRRGGLLTTAAAVVVLAVAAAAVAVLEEEVSTSEAPLAPLLG
AALVFVLLLLPLPLAAPGCLVLGGDDDGGGDTAPPLCHILMIEATLPGDF
SSPPPVEGAVDVGVSDSGVGGAVPGVDVAEPGAFFFAVGVVVTFALTAVA
VADFLRTGGVRGPVLGVELELVGVEAAFFRSGTRAGGGVRGGVAAAACLD
LPALLPTPPSPPPPPNILANAAVFGESLALVGDAGGGTAEMFRGAGAAVE
QVVCRKFEEEGEASLLTTSLFLMP back to topmRNA from alignment at Scaffold_350:188359..190405+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft936_7a-0001 ID=EsuBft936_7a-0001|Name=EsuBft936_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2047bp|location=Sequence derived from alignment at Scaffold_350:188359..190405+ (Ectocarpus subulatus male Bft15b)
ATGCCGTTCCTCGCCATCCCCACTCCCCCTTTGGTGGTCTTCAAATTGCC
TTTCGCCGCCCCCATCCCCGTGGCAGTACCTGCTGCTGTTGCCAAGCCAT
TCGCCGTCACCCCCAGACCCCCCTTCGTGGTCACCGTGACCGGCTTCGCC
GGCTTCGCCGGGGCCGCGGCAACGGTCTTCTTCGCTGCGCTCGTCACCAC
CGACTTCGGCGACGTCTGCGGTGACCTCAACGGCGATGCTCCCGGTGAAG
ACGTCGGCGAAGCAGACCCCTGGGGTAGCCTGTTAGGCAGGAGCGGGTTC
TTGGAGAAGGATGAGGACGAAGACGTGACGGATGAAGGGGAGGTCGGCGG
AGAAGACGCCTCTGCCGCGAAATGCACCACTGCCGCCGCCTTAGTGGCCG
GCGCTGCCTTCGCCGCCGGTGCCGTCGCTGCCGTCGCCGCCGGTCGTGCT
GGCAGAGCGGGAGGTGCTGGCCGCGCCACCGGCTTTGCTGTTGTTGTTGT
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTG
TCGTCGTTGTTGTTGCGCGTGCGACAGGGTTGGGTCTCGAAGGCTTCGGT
GGCGGTGACGATGACGGTGAAGATTGCGGCGGCAACGACGGTGACGGTGA
CGGTGACGGTGACGGTGACGGTGACGATGACGGTGACGATGACGATGCAG
CCTTCGCTGGGGCCGGGGGCGCTGTTGGTATTACCGACGATGACGGCGAT
GCCGCCACCGCTGCTGCTGCCGCTGCTGCCGTCGTAGCAGTGGCCGCTCC
GACAGCCGCCGCAGGGTCCCCGTTCACCGTCTGTGGTGTGGTCGTTGAAG
CGATCGGGCTCGGGGAAGCGACGGCACTACCCCCTCTGGCGTCGGCGGCG
GCGGCGGCGTCCTTCTGCTCACCGGACGTAACCGTTTTCGCTGCTGCTGC
TGCTGCTGCTGCTGTCAGCGGGCACGCCACTCGTGCTCCAGCCGCGTTGC
ATTCCGGCTCCAACGTCTTAGACGCAGCCTTTGGGGTAGACCGGAGAGGT
GGCCTACTGACGACGGCGGCGGCGGTGGTCGTGTTGGCGGTTGCAGCAGC
AGCAGTCGCCGTGCTGGAAGAGGAGGTGTCGACTTCGGAGGCGCCACTGG
CGCCGTTGCTGGGGGCGGCCCTTGTCTTTGTGCTCTTGCTACTACCACTA
CCGCTCGCGGCGCCGGGATGCCTCGTTCTCGGCGGCGACGACGATGGCGG
TGGGGACACAGCCCCGCCCCTTTGCCACATCTTGATGATCGAAGCCACCC
TGCCGGGAGACTTTTCTTCCCCCCCGCCCGTCGAGGGCGCGGTGGACGTC
GGCGTCTCGGACAGCGGCGTCGGGGGAGCAGTGCCCGGGGTCGATGTTGC
GGAACCGGGGGCATTCTTTTTCGCGGTTGGCGTGGTGGTGACCTTTGCGC
TGACAGCGGTCGCTGTGGCGGACTTCTTGAGGACAGGAGGTGTTCGGGGA
CCGGTGCTGGGAGTCGAGCTCGAGCTCGTTGGAGTCGAGGCGGCCTTCTT
CAGGTCGGGGACCAGGGCCGGTGGCGGGGTGCGCGGGGGGGTCGCCGCTG
CCGCCTGCCTAGACTTGCCGGCCCTGTTGCCGACGCCGCCATCACCCCCA
CCACCCCCAAATATCCTCGCCAACGCCGCCGTTTTCGGGGAGAGTCTTGC
CTTAGTCGGGGATGCTGGCGGGGGCACCGCGGAGATGTTTAGAGGCGCGG
GAGCGGCTGTCGAACAGGTTCCGATGTCTGGCGGCTGCACTGCCGCTGTA
TCCGCTGGAGTTGATGCTGCTGCGGTCTTTGTTGTTGTCTGCTTTGTTGG
TGTCTTTGCCGCCGCTGCTGGTGCCGCTGGTGCTGATTTTCCTGGCGAGC
TCGGAGCCGCGGCCGTCGCAGTCGTAGCTGCTGGTGCCGGTGCTGGTGCT
GACGGTTTACCACCTTGGAGGTTAGGTCGTCTGTCGAAAGTTCGAGGAGG
AGGGGGAGGCCTCTCTGCTGACGACGTCACTGTTCTTGATGCCTTAG back to topCoding sequence (CDS) from alignment at Scaffold_350:188359..190405+ >EsuBft936_7a-0001 ID=EsuBft936_7a-0001|Name=EsuBft936_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1725bp|location=Sequence derived from alignment at Scaffold_350:188359..190405+ (Ectocarpus subulatus male Bft15b)
ATGCCGTTCCTCGCCATCCCCACTCCCCCTTTGGTGGTCTTCAAATTGCC
TTTCGCCGCCCCCATCCCCGTGGCAGTACCTGCTGCTGTTGCCAAGCCAT
TCGCCGTCACCCCCAGACCCCCCTTCGTGGTCACCGTGACCGGCTTCGCC
GGCTTCGCCGGGGCCGCGGCAACGGTCTTCTTCGCTGCGCTCGTCACCAC
CGACTTCGGCGACGTCTGCGGTGACCTCAACGGCGATGCTCCCGGTGAAG
ACGTCGGCGAAGCAGACCCCTGGGGTAGCCTGTTAGGCAGGAGCGGGTTC
TTGGAGAAGGATGAGGACGAAGACGTGACGGATGAAGGGGAGGTCGGCGG
AGAAGACGCCTCTGCCGCGAAATGCACCACTGCCGCCGCCTTAGTGGCCG
GCGCTGCCTTCGCCGCCGGTGCCGTCGCTGCCGTCGCCGCCGGTCGTGCT
GGCAGAGCGGGAGGGTTGGGTCTCGAAGGCTTCGGTGGCGGTGACGATGA
CGGTGAAGATTGCGGCGGCAACGACGGTGACGGTGACGGTGACGGTGACG
GTGACGGTGACGATGACGGTGACGATGACGATGCAGCCTTCGCTGGGGCC
GGGGGCGCTGTTGGTATTACCGACGATGACGGCGATGCCGCCACCGCTGC
TGCTGCCGCTGCTGCCGTCGTAGCAGTGGCCGCTCCGACAGCCGCCGCAG
GGTCCCCGTTCACCGTCTGTGGTGTGGTCGTTGAAGCGATCGGGCTCGGG
GAAGCGACGGCACTACCCCCTCTGGCGTCGGCGGCGGCGGCGGCGTCCTT
CTGCTCACCGGACGTAACCGTTTTCGCTGCTGCTGCTGCTGCTGCTGCTG
TCAGCGGGCACGCCACTCGTGCTCCAGCCGCGTTGCATTCCGGCTCCAAC
GTCTTAGACGCAGCCTTTGGGGTAGACCGGAGAGGTGGCCTACTGACGAC
GGCGGCGGCGGTGGTCGTGTTGGCGGTTGCAGCAGCAGCAGTCGCCGTGC
TGGAAGAGGAGGTGTCGACTTCGGAGGCGCCACTGGCGCCGTTGCTGGGG
GCGGCCCTTGTCTTTGTGCTCTTGCTACTACCACTACCGCTCGCGGCGCC
GGGATGCCTCGTTCTCGGCGGCGACGACGATGGCGGTGGGGACACAGCCC
CGCCCCTTTGCCACATCTTGATGATCGAAGCCACCCTGCCGGGAGACTTT
TCTTCCCCCCCGCCCGTCGAGGGCGCGGTGGACGTCGGCGTCTCGGACAG
CGGCGTCGGGGGAGCAGTGCCCGGGGTCGATGTTGCGGAACCGGGGGCAT
TCTTTTTCGCGGTTGGCGTGGTGGTGACCTTTGCGCTGACAGCGGTCGCT
GTGGCGGACTTCTTGAGGACAGGAGGTGTTCGGGGACCGGTGCTGGGAGT
CGAGCTCGAGCTCGTTGGAGTCGAGGCGGCCTTCTTCAGGTCGGGGACCA
GGGCCGGTGGCGGGGTGCGCGGGGGGGTCGCCGCTGCCGCCTGCCTAGAC
TTGCCGGCCCTGTTGCCGACGCCGCCATCACCCCCACCACCCCCAAATAT
CCTCGCCAACGCCGCCGTTTTCGGGGAGAGTCTTGCCTTAGTCGGGGATG
CTGGCGGGGGCACCGCGGAGATGTTTAGAGGCGCGGGAGCGGCTGTCGAA
CAGGTCGTCTGTCGAAAGTTCGAGGAGGAGGGGGAGGCCTCTCTGCTGAC
GACGTCACTGTTCTTGATGCCTTAG back to top
|