EsuBft936_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft936_7a-0001
Unique Name	EsuBft936_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_350	contig	Scaffold_350:188359..190405 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft936_7
Protein domains	TMhelix
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	SignalP-TM
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	172
Hectar predicted targeting category	signal anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft936_7a	EsuBft936_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_350 188359..190405 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_7a-0001-exon	agat-exon-78527	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 188359..188821 +
EsuBft936_7a-0001-exon	agat-exon-78528	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 188936..190125 +
EsuBft936_7a-0001-exon	EsuBft936_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_350 190334..190405 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_7a-0001-cds	EsuBft936_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_350 188359..188821 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft936_7a-0001	EsuBft936_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_350 188359..190405 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_350:188359..190405+
coding sequence from alignment at Scaffold_350:188359..190405+

spliced messenger RNA

>EsuBft936_7a-0001 ID=EsuBft936_7a-0001|Name=EsuBft936_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1725bp|location=Sequence derived from alignment at Scaffold_350:188359..190405+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTTCCTCGCCATCCCCACTCCCCCTTTGGTGGTCTTCAAATTGCC
TTTCGCCGCCCCCATCCCCGTGGCAGTACCTGCTGCTGTTGCCAAGCCAT
TCGCCGTCACCCCCAGACCCCCCTTCGTGGTCACCGTGACCGGCTTCGCC
GGCTTCGCCGGGGCCGCGGCAACGGTCTTCTTCGCTGCGCTCGTCACCAC
CGACTTCGGCGACGTCTGCGGTGACCTCAACGGCGATGCTCCCGGTGAAG
ACGTCGGCGAAGCAGACCCCTGGGGTAGCCTGTTAGGCAGGAGCGGGTTC
TTGGAGAAGGATGAGGACGAAGACGTGACGGATGAAGGGGAGGTCGGCGG
AGAAGACGCCTCTGCCGCGAAATGCACCACTGCCGCCGCCTTAGTGGCCG
GCGCTGCCTTCGCCGCCGGTGCCGTCGCTGCCGTCGCCGCCGGTCGTGCT
GGCAGAGCGGGAGGGTTGGGTCTCGAAGGCTTCGGTGGCGGTGACGATGA
CGGTGAAGATTGCGGCGGCAACGACGGTGACGGTGACGGTGACGGTGACG
GTGACGGTGACGATGACGGTGACGATGACGATGCAGCCTTCGCTGGGGCC
GGGGGCGCTGTTGGTATTACCGACGATGACGGCGATGCCGCCACCGCTGC
TGCTGCCGCTGCTGCCGTCGTAGCAGTGGCCGCTCCGACAGCCGCCGCAG
GGTCCCCGTTCACCGTCTGTGGTGTGGTCGTTGAAGCGATCGGGCTCGGG
GAAGCGACGGCACTACCCCCTCTGGCGTCGGCGGCGGCGGCGGCGTCCTT
CTGCTCACCGGACGTAACCGTTTTCGCTGCTGCTGCTGCTGCTGCTGCTG
TCAGCGGGCACGCCACTCGTGCTCCAGCCGCGTTGCATTCCGGCTCCAAC
GTCTTAGACGCAGCCTTTGGGGTAGACCGGAGAGGTGGCCTACTGACGAC
GGCGGCGGCGGTGGTCGTGTTGGCGGTTGCAGCAGCAGCAGTCGCCGTGC
TGGAAGAGGAGGTGTCGACTTCGGAGGCGCCACTGGCGCCGTTGCTGGGG
GCGGCCCTTGTCTTTGTGCTCTTGCTACTACCACTACCGCTCGCGGCGCC
GGGATGCCTCGTTCTCGGCGGCGACGACGATGGCGGTGGGGACACAGCCC
CGCCCCTTTGCCACATCTTGATGATCGAAGCCACCCTGCCGGGAGACTTT
TCTTCCCCCCCGCCCGTCGAGGGCGCGGTGGACGTCGGCGTCTCGGACAG
CGGCGTCGGGGGAGCAGTGCCCGGGGTCGATGTTGCGGAACCGGGGGCAT
TCTTTTTCGCGGTTGGCGTGGTGGTGACCTTTGCGCTGACAGCGGTCGCT
GTGGCGGACTTCTTGAGGACAGGAGGTGTTCGGGGACCGGTGCTGGGAGT
CGAGCTCGAGCTCGTTGGAGTCGAGGCGGCCTTCTTCAGGTCGGGGACCA
GGGCCGGTGGCGGGGTGCGCGGGGGGGTCGCCGCTGCCGCCTGCCTAGAC
TTGCCGGCCCTGTTGCCGACGCCGCCATCACCCCCACCACCCCCAAATAT
CCTCGCCAACGCCGCCGTTTTCGGGGAGAGTCTTGCCTTAGTCGGGGATG
CTGGCGGGGGCACCGCGGAGATGTTTAGAGGCGCGGGAGCGGCTGTCGAA
CAGGTCGTCTGTCGAAAGTTCGAGGAGGAGGGGGAGGCCTCTCTGCTGAC
GACGTCACTGTTCTTGATGCCTTAG

protein sequence of EsuBft936_7a-0001

>EsuBft936_7 ID=EsuBft936_7|Name=EsuBft936_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=574bp
MPFLAIPTPPLVVFKLPFAAPIPVAVPAAVAKPFAVTPRPPFVVTVTGFA
GFAGAAATVFFAALVTTDFGDVCGDLNGDAPGEDVGEADPWGSLLGRSGF
LEKDEDEDVTDEGEVGGEDASAAKCTTAAALVAGAAFAAGAVAAVAAGRA
GRAGGLGLEGFGGGDDDGEDCGGNDGDGDGDGDGDGDDDGDDDDAAFAGA
GGAVGITDDDGDAATAAAAAAAVVAVAAPTAAAGSPFTVCGVVVEAIGLG
EATALPPLASAAAAASFCSPDVTVFAAAAAAAAVSGHATRAPAALHSGSN
VLDAAFGVDRRGGLLTTAAAVVVLAVAAAAVAVLEEEVSTSEAPLAPLLG
AALVFVLLLLPLPLAAPGCLVLGGDDDGGGDTAPPLCHILMIEATLPGDF
SSPPPVEGAVDVGVSDSGVGGAVPGVDVAEPGAFFFAVGVVVTFALTAVA
VADFLRTGGVRGPVLGVELELVGVEAAFFRSGTRAGGGVRGGVAAAACLD
LPALLPTPPSPPPPPNILANAAVFGESLALVGDAGGGTAEMFRGAGAAVE
QVVCRKFEEEGEASLLTTSLFLMP

mRNA from alignment at Scaffold_350:188359..190405+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft936_7a-0001 ID=EsuBft936_7a-0001|Name=EsuBft936_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2047bp|location=Sequence derived from alignment at Scaffold_350:188359..190405+ (Ectocarpus subulatus male Bft15b)
ATGCCGTTCCTCGCCATCCCCACTCCCCCTTTGGTGGTCTTCAAATTGCC
TTTCGCCGCCCCCATCCCCGTGGCAGTACCTGCTGCTGTTGCCAAGCCAT
TCGCCGTCACCCCCAGACCCCCCTTCGTGGTCACCGTGACCGGCTTCGCC
GGCTTCGCCGGGGCCGCGGCAACGGTCTTCTTCGCTGCGCTCGTCACCAC
CGACTTCGGCGACGTCTGCGGTGACCTCAACGGCGATGCTCCCGGTGAAG
ACGTCGGCGAAGCAGACCCCTGGGGTAGCCTGTTAGGCAGGAGCGGGTTC
TTGGAGAAGGATGAGGACGAAGACGTGACGGATGAAGGGGAGGTCGGCGG
AGAAGACGCCTCTGCCGCGAAATGCACCACTGCCGCCGCCTTAGTGGCCG
GCGCTGCCTTCGCCGCCGGTGCCGTCGCTGCCGTCGCCGCCGGTCGTGCT
GGCAGAGCGGGAGGTGCTGGCCGCGCCACCGGCTTTGCTGTTGTTGTTGT
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTG
TCGTCGTTGTTGTTGCGCGTGCGACAGGGTTGGGTCTCGAAGGCTTCGGT
GGCGGTGACGATGACGGTGAAGATTGCGGCGGCAACGACGGTGACGGTGA
CGGTGACGGTGACGGTGACGGTGACGATGACGGTGACGATGACGATGCAG
CCTTCGCTGGGGCCGGGGGCGCTGTTGGTATTACCGACGATGACGGCGAT
GCCGCCACCGCTGCTGCTGCCGCTGCTGCCGTCGTAGCAGTGGCCGCTCC
GACAGCCGCCGCAGGGTCCCCGTTCACCGTCTGTGGTGTGGTCGTTGAAG
CGATCGGGCTCGGGGAAGCGACGGCACTACCCCCTCTGGCGTCGGCGGCG
GCGGCGGCGTCCTTCTGCTCACCGGACGTAACCGTTTTCGCTGCTGCTGC
TGCTGCTGCTGCTGTCAGCGGGCACGCCACTCGTGCTCCAGCCGCGTTGC
ATTCCGGCTCCAACGTCTTAGACGCAGCCTTTGGGGTAGACCGGAGAGGT
GGCCTACTGACGACGGCGGCGGCGGTGGTCGTGTTGGCGGTTGCAGCAGC
AGCAGTCGCCGTGCTGGAAGAGGAGGTGTCGACTTCGGAGGCGCCACTGG
CGCCGTTGCTGGGGGCGGCCCTTGTCTTTGTGCTCTTGCTACTACCACTA
CCGCTCGCGGCGCCGGGATGCCTCGTTCTCGGCGGCGACGACGATGGCGG
TGGGGACACAGCCCCGCCCCTTTGCCACATCTTGATGATCGAAGCCACCC
TGCCGGGAGACTTTTCTTCCCCCCCGCCCGTCGAGGGCGCGGTGGACGTC
GGCGTCTCGGACAGCGGCGTCGGGGGAGCAGTGCCCGGGGTCGATGTTGC
GGAACCGGGGGCATTCTTTTTCGCGGTTGGCGTGGTGGTGACCTTTGCGC
TGACAGCGGTCGCTGTGGCGGACTTCTTGAGGACAGGAGGTGTTCGGGGA
CCGGTGCTGGGAGTCGAGCTCGAGCTCGTTGGAGTCGAGGCGGCCTTCTT
CAGGTCGGGGACCAGGGCCGGTGGCGGGGTGCGCGGGGGGGTCGCCGCTG
CCGCCTGCCTAGACTTGCCGGCCCTGTTGCCGACGCCGCCATCACCCCCA
CCACCCCCAAATATCCTCGCCAACGCCGCCGTTTTCGGGGAGAGTCTTGC
CTTAGTCGGGGATGCTGGCGGGGGCACCGCGGAGATGTTTAGAGGCGCGG
GAGCGGCTGTCGAACAGGTTCCGATGTCTGGCGGCTGCACTGCCGCTGTA
TCCGCTGGAGTTGATGCTGCTGCGGTCTTTGTTGTTGTCTGCTTTGTTGG
TGTCTTTGCCGCCGCTGCTGGTGCCGCTGGTGCTGATTTTCCTGGCGAGC
TCGGAGCCGCGGCCGTCGCAGTCGTAGCTGCTGGTGCCGGTGCTGGTGCT
GACGGTTTACCACCTTGGAGGTTAGGTCGTCTGTCGAAAGTTCGAGGAGG
AGGGGGAGGCCTCTCTGCTGACGACGTCACTGTTCTTGATGCCTTAG

Coding sequence (CDS) from alignment at Scaffold_350:188359..190405+

>EsuBft936_7a-0001 ID=EsuBft936_7a-0001|Name=EsuBft936_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1725bp|location=Sequence derived from alignment at Scaffold_350:188359..190405+ (Ectocarpus subulatus male Bft15b)
ATGCCGTTCCTCGCCATCCCCACTCCCCCTTTGGTGGTCTTCAAATTGCC
TTTCGCCGCCCCCATCCCCGTGGCAGTACCTGCTGCTGTTGCCAAGCCAT
TCGCCGTCACCCCCAGACCCCCCTTCGTGGTCACCGTGACCGGCTTCGCC
GGCTTCGCCGGGGCCGCGGCAACGGTCTTCTTCGCTGCGCTCGTCACCAC
CGACTTCGGCGACGTCTGCGGTGACCTCAACGGCGATGCTCCCGGTGAAG
ACGTCGGCGAAGCAGACCCCTGGGGTAGCCTGTTAGGCAGGAGCGGGTTC
TTGGAGAAGGATGAGGACGAAGACGTGACGGATGAAGGGGAGGTCGGCGG
AGAAGACGCCTCTGCCGCGAAATGCACCACTGCCGCCGCCTTAGTGGCCG
GCGCTGCCTTCGCCGCCGGTGCCGTCGCTGCCGTCGCCGCCGGTCGTGCT
GGCAGAGCGGGAGGGTTGGGTCTCGAAGGCTTCGGTGGCGGTGACGATGA
CGGTGAAGATTGCGGCGGCAACGACGGTGACGGTGACGGTGACGGTGACG
GTGACGGTGACGATGACGGTGACGATGACGATGCAGCCTTCGCTGGGGCC
GGGGGCGCTGTTGGTATTACCGACGATGACGGCGATGCCGCCACCGCTGC
TGCTGCCGCTGCTGCCGTCGTAGCAGTGGCCGCTCCGACAGCCGCCGCAG
GGTCCCCGTTCACCGTCTGTGGTGTGGTCGTTGAAGCGATCGGGCTCGGG
GAAGCGACGGCACTACCCCCTCTGGCGTCGGCGGCGGCGGCGGCGTCCTT
CTGCTCACCGGACGTAACCGTTTTCGCTGCTGCTGCTGCTGCTGCTGCTG
TCAGCGGGCACGCCACTCGTGCTCCAGCCGCGTTGCATTCCGGCTCCAAC
GTCTTAGACGCAGCCTTTGGGGTAGACCGGAGAGGTGGCCTACTGACGAC
GGCGGCGGCGGTGGTCGTGTTGGCGGTTGCAGCAGCAGCAGTCGCCGTGC
TGGAAGAGGAGGTGTCGACTTCGGAGGCGCCACTGGCGCCGTTGCTGGGG
GCGGCCCTTGTCTTTGTGCTCTTGCTACTACCACTACCGCTCGCGGCGCC
GGGATGCCTCGTTCTCGGCGGCGACGACGATGGCGGTGGGGACACAGCCC
CGCCCCTTTGCCACATCTTGATGATCGAAGCCACCCTGCCGGGAGACTTT
TCTTCCCCCCCGCCCGTCGAGGGCGCGGTGGACGTCGGCGTCTCGGACAG
CGGCGTCGGGGGAGCAGTGCCCGGGGTCGATGTTGCGGAACCGGGGGCAT
TCTTTTTCGCGGTTGGCGTGGTGGTGACCTTTGCGCTGACAGCGGTCGCT
GTGGCGGACTTCTTGAGGACAGGAGGTGTTCGGGGACCGGTGCTGGGAGT
CGAGCTCGAGCTCGTTGGAGTCGAGGCGGCCTTCTTCAGGTCGGGGACCA
GGGCCGGTGGCGGGGTGCGCGGGGGGGTCGCCGCTGCCGCCTGCCTAGAC
TTGCCGGCCCTGTTGCCGACGCCGCCATCACCCCCACCACCCCCAAATAT
CCTCGCCAACGCCGCCGTTTTCGGGGAGAGTCTTGCCTTAGTCGGGGATG
CTGGCGGGGGCACCGCGGAGATGTTTAGAGGCGCGGGAGCGGCTGTCGAA
CAGGTCGTCTGTCGAAAGTTCGAGGAGGAGGGGGAGGCCTCTCTGCTGAC
GACGTCACTGTTCTTGATGCCTTAG