EsuBft936_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft936_3a-0001
Unique NameEsuBft936_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:222603..225101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FZS4
ProteomeIdEsuBft936_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length219
Hectar predicted targeting categoryother localisation
Evalue1.08e-17
EggNOG OGs2D50F@1|root,2SWWM@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft936_3aEsuBft936_3aEctocarpus subulatus male Bft15bgeneScaffold_350 222603..225101 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_3a-0001-exonEsuBft936_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 222603..222913 -
EsuBft936_3a-0001-exonagat-exon-78508Ectocarpus subulatus male Bft15bexonScaffold_350 223220..225101 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_3a-0001-exonagat-three_prime_utr-23234Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 222603..222790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_3a-0001-cdsEsuBft936_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 222791..222913 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_3a-0001-exonagat-five_prime_utr-15108Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_350 224522..225101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_3a-0001EsuBft936_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 222791..224521 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft936_3a-0001 ID=EsuBft936_3a-0001|Name=EsuBft936_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2193bp|location=Sequence derived from alignment at Scaffold_350:222603..225101- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCGTGCACAAGTAAAAATCCCAAAATTTCCCAGCACAAGTGACAA
CTTTTCTCTGCACACAGGTGGTTATTCGGAATTCTGAAAATACCGGAAAA
CGCCCTGTTTACAGGCGCATCGCGTGACGGAGAGTTTTTTTTTTTTTTCC
TTGACTTTTTATCTCCGATAAACCGGAAAATCTTGTTTTGTTTTTCGAGA
GGTGTGTTGTTTGTTGATGCCACCAAACTCAACGGTTTTGGACAGATCTC
GGAATTTGCCAGGTGGGATTTTTTTTTTTTTTGAAATATTCGAAATTGAC
GGAGATATACAGGGAAAAACTTGATTTAAAGGGTCAACTTGTTTTGTTTT
ATATGCAATAACTAACCGACCGATTTCAAAATAGAGTGCGGCAAACGATT
CCTCTCGACCATCCCCAGGTGGGAATTTCTTGGTTTTGCTGGGAAAAATC
TGGTTCTCGAGATATTCGCGTTGTTGTTGTTCCGCGCCATGCGGTGACTT
TTTTTTTTCCTGGGCGCACGCGGTGCCCAACAACTGCACACACGGCAACC
CGAACAACACAAAACACGCACACAAGCACCATGGGGAAGGCTAAGGGACG
GGCAAAGAAGAAGAAATTCGGAAATCGCGGACCCGATGGCAGGGCGGTTC
CTAAAAAGCCGAAGCCGGCGCAGCAAAATGATAACTCATCGCCCGGCTCT
GGTGATGCACCAGTCGACGGCGCGGATTTGATGGACGTGGATGAAGAAGG
GACGGCAGCGGCAAACGAGGACGCCAACGATGAGGAGTGGTGCGATGAGG
ATTCCAGCGGTGCAAACGGCAGCAGTGGTGGAGGTCAGTCGATACTGCGT
TTTGCGCACCGGTCTGTAGCGTCCGCAGCAGCGCGCGCCGCAAGAAACGC
GGCGAAAAAAATCTCGCCGCCTGCACTGTCCAGGAGCCAAAAATTCCGAA
ACAGAAAAAGGCTTCTCGGACAAGAAACGAAGGACATGGCACGATTCATG
GGAGCATTCTTGCGGCGGGCGCAGCAGGAAAAGCAGCAACAGTCGGAGCA
GGAAGAGGTGGAGAGCTCCTCTGTCGGTAACGAGGTTCGTCCTGTAGAGG
AATCGGCGGTGAATTTAGAGATTGCACCGCCTACTGGTCCCTCGAACGAC
GGCAGCGTGTGCGGACATGTAGAGACCAGCAGTAGCTGTGGCAGTGTCGG
CGACATGCCCATAACCACGGGTCACGGGCTTCTGATAGAGGAGTGGTGTA
GCGGTCAGGAGATGAAGGACGCCGAAGAAGCGATGGATGACATTTGCGAT
ACCTCATCAGACGGGTTTCTTGACGGTTTGGATTTCAGCAGCAGCAGCAG
CCGCAGCAGCAGCCGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCA
GCGGCGCCGAAAGGGGCGTCCCCCCCTGTCCTCTTGGCAAAGAGGCAGTA
GACGTTGGGCAGGAGACGGGGGCGAACGATGAGGTCGGCGACAAAATGCG
AACCACTGGAGTACCCGTCGTTGCGGACCTCCTCCCACCAGGGCCCTCCC
GTCGAAGCATCCGAGACGGCCGTTTCGGCGGTAGGTTTGCTGCACCCACC
CGCCGATACGACAACACGGCTGGAAACAACAAAGGTGGGACAGGGAGAGG
CAACAAGGTTCTGGCGCCGGAAGAGGTCCACGACAGATCAGGTGTCACTG
CGATGCAGCTTCAGACGAACAAGTCGCGGCGCGCCGTGCGAAGGGAGAGG
GTGGCGCAGGAGGGCAAGATATGGACGCCTGCGGCGCTGGCTCGGGCAAG
GGATCGAACACGCAAGCACTGGTCGAGGCGTAAGGCAGAGCTCATGGAAA
CCTATCGCAACGCCTACGACGTGCTTCAGAAGGCTGAAGAGACCAACAAC
TACGGATCAGTGGTGGAGGATTCGACGACGATGCTGGATGAAGCACACCT
GGTTCGCACCACCCGTGTCATCCGCACCGTGAAGCATTTCCTGTTTCTCG
AGTGAGTGGGCGGGGAATGTGTAGTGCTGTCTTCTCCTGTCTTGCATCTT
CGTTTGAACCATTGGGCATTGATTGGATCGGCGCTGCCGTTGAAGCACCA
TTCGCGCTGCATGTTCATGCCGGTTAGATATTGCTGAGCGATGGTGCTGT
CTCAGAAGAGGATACTCCGTTTACCACATATCCCCCCGCGAAA
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protein sequence of EsuBft936_3a-0001

>EsuBft936_3 ID=EsuBft936_3|Name=EsuBft936_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=474bp
MGKAKGRAKKKKFGNRGPDGRAVPKKPKPAQQNDNSSPGSGDAPVDGADL
MDVDEEGTAAANEDANDEEWCDEDSSGANGSSGGGQSILRFAHRSVASAA
ARAARNAAKKISPPALSRSQKFRNRKRLLGQETKDMARFMGAFLRRAQQE
KQQQSEQEEVESSSVGNEVRPVEESAVNLEIAPPTGPSNDGSVCGHVETS
SSCGSVGDMPITTGHGLLIEEWCSGQEMKDAEEAMDDICDTSSDGFLDGL
DFSSSSSRSSSRSGGGGGGGGGSSGAERGVPPCPLGKEAVDVGQETGAND
EVGDKMRTTGVPVVADLLPPGPSRRSIRDGRFGGRFAAPTRRYDNTAGNN
KGGTGRGNKVLAPEEVHDRSGVTAMQLQTNKSRRAVRRERVAQEGKIWTP
AALARARDRTRKHWSRRKAELMETYRNAYDVLQKAEETNNYGSVVEDSTT
MLDEAHLVRTTRVIRTVKHFLFLE
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mRNA from alignment at Scaffold_350:222603..225101-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft936_3a-0001 ID=EsuBft936_3a-0001|Name=EsuBft936_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2499bp|location=Sequence derived from alignment at Scaffold_350:222603..225101- (Ectocarpus subulatus male Bft15b)
ATGGTCCGTGCACAAGTAAAAATCCCAAAATTTCCCAGCACAAGTGACAA
CTTTTCTCTGCACACAGGTGGTTATTCGGAATTCTGAAAATACCGGAAAA
CGCCCTGTTTACAGGCGCATCGCGTGACGGAGAGTTTTTTTTTTTTTTCC
TTGACTTTTTATCTCCGATAAACCGGAAAATCTTGTTTTGTTTTTCGAGA
GGTGTGTTGTTTGTTGATGCCACCAAACTCAACGGTTTTGGACAGATCTC
GGAATTTGCCAGGTGGGATTTTTTTTTTTTTTGAAATATTCGAAATTGAC
GGAGATATACAGGGAAAAACTTGATTTAAAGGGTCAACTTGTTTTGTTTT
ATATGCAATAACTAACCGACCGATTTCAAAATAGAGTGCGGCAAACGATT
CCTCTCGACCATCCCCAGGTGGGAATTTCTTGGTTTTGCTGGGAAAAATC
TGGTTCTCGAGATATTCGCGTTGTTGTTGTTCCGCGCCATGCGGTGACTT
TTTTTTTTCCTGGGCGCACGCGGTGCCCAACAACTGCACACACGGCAACC
CGAACAACACAAAACACGCACACAAGCACCATGGGGAAGGCTAAGGGACG
GGCAAAGAAGAAGAAATTCGGAAATCGCGGACCCGATGGCAGGGCGGTTC
CTAAAAAGCCGAAGCCGGCGCAGCAAAATGATAACTCATCGCCCGGCTCT
GGTGATGCACCAGTCGACGGCGCGGATTTGATGGACGTGGATGAAGAAGG
GACGGCAGCGGCAAACGAGGACGCCAACGATGAGGAGTGGTGCGATGAGG
ATTCCAGCGGTGCAAACGGCAGCAGTGGTGGAGGTCAGTCGATACTGCGT
TTTGCGCACCGGTCTGTAGCGTCCGCAGCAGCGCGCGCCGCAAGAAACGC
GGCGAAAAAAATCTCGCCGCCTGCACTGTCCAGGAGCCAAAAATTCCGAA
ACAGAAAAAGGCTTCTCGGACAAGAAACGAAGGACATGGCACGATTCATG
GGAGCATTCTTGCGGCGGGCGCAGCAGGAAAAGCAGCAACAGTCGGAGCA
GGAAGAGGTGGAGAGCTCCTCTGTCGGTAACGAGGTTCGTCCTGTAGAGG
AATCGGCGGTGAATTTAGAGATTGCACCGCCTACTGGTCCCTCGAACGAC
GGCAGCGTGTGCGGACATGTAGAGACCAGCAGTAGCTGTGGCAGTGTCGG
CGACATGCCCATAACCACGGGTCACGGGCTTCTGATAGAGGAGTGGTGTA
GCGGTCAGGAGATGAAGGACGCCGAAGAAGCGATGGATGACATTTGCGAT
ACCTCATCAGACGGGTTTCTTGACGGTTTGGATTTCAGCAGCAGCAGCAG
CCGCAGCAGCAGCCGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCA
GCGGCGCCGAAAGGGGCGTCCCCCCCTGTCCTCTTGGCAAAGAGGCAGTA
GACGTTGGGCAGGAGACGGGGGCGAACGATGAGGTCGGCGACAAAATGCG
AACCACTGGAGTACCCGTCGTTGCGGACCTCCTCCCACCAGGGCCCTCCC
GTCGAAGCATCCGAGACGGCCGTTTCGGCGGTAGGTTTGCTGCACCCACC
CGCCGATACGACAACACGGCTGGAAACAACAAAGGTGGGACAGGGAGAGG
CAACAAGGTTCTGGCGCCGGAAGAGGTCCACGACAGATCAGGTGTCACTG
CGATGCAGCTTCAGACGAACAAGTCGCGGCGCGCCGTGCGAAGGGAGAGG
GTGGCGCAGGAGGGCAAGATATGGACGCCTGCGGCGCTGGCTCGGGCAAG
GGATCGAACACGCAAGCACTGGTCGAGGCGTAAGGCAGAGCTCATGGAAA
CCTATCGCAACGCCTACGACGTGCTTCAGAAGGTGAGGTCCGTGGTAGCT
GTACCTGATCAATGCTTTTCAATGAAAGCCAACTTTAAATATTTGTTGTG
GTTTTGAGCGTCAGACACTGGCAAATTTGGCGCCTGTTCTCAACACTGCT
GTGGCCACCCATAGGGCGTCACCGCCGTGTTTTTAGGTGCTGATGGTTGC
GTGCCGTGAGCCCATGTTCTTTTCCGTTCTTCCCCCCCGCCCCCCGATAT
CGAAACCTACGGTAGAGATGAGGTCGCCTGAAATTTCTGCTGACAGCGAC
ATCTCCAAAACGCCCGTGTTCTTCCTCCTTCGTCTCAGGCTGAAGAGACC
AACAACTACGGATCAGTGGTGGAGGATTCGACGACGATGCTGGATGAAGC
ACACCTGGTTCGCACCACCCGTGTCATCCGCACCGTGAAGCATTTCCTGT
TTCTCGAGTGAGTGGGCGGGGAATGTGTAGTGCTGTCTTCTCCTGTCTTG
CATCTTCGTTTGAACCATTGGGCATTGATTGGATCGGCGCTGCCGTTGAA
GCACCATTCGCGCTGCATGTTCATGCCGGTTAGATATTGCTGAGCGATGG
TGCTGTCTCAGAAGAGGATACTCCGTTTACCACATATCCCCCCGCGAAA
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Coding sequence (CDS) from alignment at Scaffold_350:222603..225101-

>EsuBft936_3a-0001 ID=EsuBft936_3a-0001|Name=EsuBft936_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1425bp|location=Sequence derived from alignment at Scaffold_350:222603..225101- (Ectocarpus subulatus male Bft15b)
ATGGGGAAGGCTAAGGGACGGGCAAAGAAGAAGAAATTCGGAAATCGCGG
ACCCGATGGCAGGGCGGTTCCTAAAAAGCCGAAGCCGGCGCAGCAAAATG
ATAACTCATCGCCCGGCTCTGGTGATGCACCAGTCGACGGCGCGGATTTG
ATGGACGTGGATGAAGAAGGGACGGCAGCGGCAAACGAGGACGCCAACGA
TGAGGAGTGGTGCGATGAGGATTCCAGCGGTGCAAACGGCAGCAGTGGTG
GAGGTCAGTCGATACTGCGTTTTGCGCACCGGTCTGTAGCGTCCGCAGCA
GCGCGCGCCGCAAGAAACGCGGCGAAAAAAATCTCGCCGCCTGCACTGTC
CAGGAGCCAAAAATTCCGAAACAGAAAAAGGCTTCTCGGACAAGAAACGA
AGGACATGGCACGATTCATGGGAGCATTCTTGCGGCGGGCGCAGCAGGAA
AAGCAGCAACAGTCGGAGCAGGAAGAGGTGGAGAGCTCCTCTGTCGGTAA
CGAGGTTCGTCCTGTAGAGGAATCGGCGGTGAATTTAGAGATTGCACCGC
CTACTGGTCCCTCGAACGACGGCAGCGTGTGCGGACATGTAGAGACCAGC
AGTAGCTGTGGCAGTGTCGGCGACATGCCCATAACCACGGGTCACGGGCT
TCTGATAGAGGAGTGGTGTAGCGGTCAGGAGATGAAGGACGCCGAAGAAG
CGATGGATGACATTTGCGATACCTCATCAGACGGGTTTCTTGACGGTTTG
GATTTCAGCAGCAGCAGCAGCCGCAGCAGCAGCCGCAGCGGCGGCGGCGG
CGGCGGCGGCGGCGGCAGCAGCGGCGCCGAAAGGGGCGTCCCCCCCTGTC
CTCTTGGCAAAGAGGCAGTAGACGTTGGGCAGGAGACGGGGGCGAACGAT
GAGGTCGGCGACAAAATGCGAACCACTGGAGTACCCGTCGTTGCGGACCT
CCTCCCACCAGGGCCCTCCCGTCGAAGCATCCGAGACGGCCGTTTCGGCG
GTAGGTTTGCTGCACCCACCCGCCGATACGACAACACGGCTGGAAACAAC
AAAGGTGGGACAGGGAGAGGCAACAAGGTTCTGGCGCCGGAAGAGGTCCA
CGACAGATCAGGTGTCACTGCGATGCAGCTTCAGACGAACAAGTCGCGGC
GCGCCGTGCGAAGGGAGAGGGTGGCGCAGGAGGGCAAGATATGGACGCCT
GCGGCGCTGGCTCGGGCAAGGGATCGAACACGCAAGCACTGGTCGAGGCG
TAAGGCAGAGCTCATGGAAACCTATCGCAACGCCTACGACGTGCTTCAGA
AGGCTGAAGAGACCAACAACTACGGATCAGTGGTGGAGGATTCGACGACG
ATGCTGGATGAAGCACACCTGGTTCGCACCACCCGTGTCATCCGCACCGT
GAAGCATTTCCTGTTTCTCGAGTGA
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