Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FUH6 |
| ProteomeId | EsuBft936_2 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 161 |
| Hectar predicted targeting category | other localisation |
| Evalue | 9.7e-84 |
| EggNOG OGs | COG4886@1|root,KOG0619@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | regulation of response to stimulus |
| COG category | U |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft936_2a-0001 ID=EsuBft936_2a-0001|Name=EsuBft936_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1619bp|location=Sequence derived from alignment at Scaffold_350:225140..229774+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTCGGGAACACTGGTCACACGTTCCGATGGGGTGGAGTGAGTCCTGGGTA
ACCCTTTTTCTCATTGGTTACTGTCGGAAATGAAATAATCAGGTGGCCGA
TCCCTCGCTTTGTGTGCGTGCTCCCCGCCCGGGACACGCGCCTCTCGGAG
AGCGATAGATCTTTCGAAAAGTGGTCGATTGCACTCAAGAAGTGGTGCAC
GTCCAAGAGCCCCGCGAAGGACGTGAAGAACCCCAACCAGAAGACCAGCA
TCCTCGGCTTGAAGAAGCCCCTGCTTACAAGGCTCGTGACGCGAGAACTC
CGCCTATTCTTCCTCTGTGGCCAAGACAAGAGCCTGGCCGAGTGTGGGCC
CGATGGGCAAGGGTACAAGTAGGGTGAAGGAGTTTTTAGATTGGGTGGGG
AAAGTGGCACCGGCCGCGAAGATTGGACTGACCCTCGCTTCAATCGCGTT
GAAGGTGTGCACCGGTCTGGCAGTGTCTGCCGACACATTCGAGGCGGCGT
TCGGGACATCAGAGGACTTGTCCGCGTTCGTACAGGACGCACTGTCCGCG
GGCATCGAGGGGATGACGAGCAAGGCCGGCAACAGGCTTGAAAGGCTTCA
AAACAGTGGACCGTCGGAACGGCTACCCCACGCTGGTGTGCGCGGTGACG
GAGCGCAAAAGCCTACCCCTTTGGAAGGGTTTGACTACGACAAGCTTAAG
GAGGTGGTCAAGAGCTTCGAGGTGGACAGGACGCAGGGAGATGGTACTCG
TTACCCCAGCTTCGACACCACCATGAAAATCGTGGACAGGCACGGAGGTG
GCGTGGAGTGGGCATGGGTCAGGAACGGACACATCGACAAGTTCGCTGGT
GAAAGCTAGCGTCGAGTTGGCGCCACGGTACCTGAAGGTTCGCCAAGTAG
GAACATGCTTCAACCTTCGAGCATGTCGCGCCGTTTCGTGGGGCTTGGCC
AGGACAGCGTATCGATGCGTTTGTTGGGAGAATGGTGGTATCGTTTTGTG
GAGGTGAACTCCTGGTGCGAGCGTGGGGCTATAAATTTGTTGTGGTTCCC
TGCCCTGAGATGGTGTCCTCCGGACCACGTGTTTGCTACAGTACGTATGT
ATTTTTTTGGGTAGGGCCGTTTCAACCTGTAGTTTTTTTTCGAAAGGAGA
CCATTCGCAATCCGTGCGGGTTTGAAGAGAGTCCGGTACCAGGTGTTGTT
AACGGTCAAGTACGTGATGCGCCGGAATCACGCAAAAAAATGGCTGTTTT
TTTCGCACCCCTCGGTAAACACAGTGTACCGAGCTACTGATCAAGGATTG
GGAAGCATCTGGTAGTAGTTGTCGAGAGAGAGGGTAACAAAAGGATCCTT
GTGCGCTCCCCGTCAGCATCGCTACGTTCTTGGAGCACGCCATGTCTTAC
TACTTTTTGATTTACCGCTATATGAGAGGCAGTATTCAGCAGCAGCTCGA
TTCTAGAAACGTGTAGCTAACCGCCAGCATTTGTTGAGCACCACCTCCAA
AGCGAACGGGCCAGTCAGTAGTGGACTAATGGAGGCGTGGCAGAGAAGAA
GCATTTCGTCAGCAGGTAGGACGCCTACAACATGGTGGGGTTGGGGTGCT
TGTTGTATTGCCAGCAGCG back to topprotein sequence of EsuBft936_2a-0001 >EsuBft936_2 ID=EsuBft936_2|Name=EsuBft936_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=168bp
MGKGTSRVKEFLDWVGKVAPAAKIGLTLASIALKVCTGLAVSADTFEAAF
GTSEDLSAFVQDALSAGIEGMTSKAGNRLERLQNSGPSERLPHAGVRGDG
AQKPTPLEGFDYDKLKEVVKSFEVDRTQGDGTRYPSFDTTMKIVDRHGGG
VEWAWVRNGHIDKFAGES back to topmRNA from alignment at Scaffold_350:225140..229774+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft936_2a-0001 ID=EsuBft936_2a-0001|Name=EsuBft936_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4635bp|location=Sequence derived from alignment at Scaffold_350:225140..229774+ (Ectocarpus subulatus male Bft15b)
TTCGGGAACACTGGTCACACGTTCCGATGGGGTGGAGTGAGTCCTGGGTA
ACCCTTTTTCTCATTGGTTACTGTCGGAAATGAAATAATCAGGTGGCCGA
TCCCTCGCTTTGTGTGCGTGCTCCCCGCCCGGGACACGCGCCTCTCGGAG
AGCGATAGATCTTTCGAAAAGTGGTCGATTGCACTCAAGAAGTGGTGCAC
GTCCAAGAGCCCCGCGAAGGACGTGAAGAACCCCAACCAGAAGACCAGCA
TCCTCGGCTTGAAGAAGCCCCTGCTTACAAGGCTCGTGACGCGAGAACTC
CGCCTATTCTTCCTCTGTGGCCAAGACAAGAGCCTGGCCGAGTGTGGGCC
CGATGGGCAAGGGTACAAGGTGATCAGGCCAGAGACTGGCAGCGTTGAGT
GTTTGAATCGTCCGATGTATGGCAACAAACCCGTTGTTACCTGCGTTCCC
TTACTGCGGTACGCGCGTGTGTTTTCATCCTGGAGGCGTGCGCTTCGCTG
TTCACGTCGGCAGCGTGGCGATGACGAGAGGAAAGACAACTGGCCGCTAA
ATTCATTAGACATGACGTGAAAGAGCGAGGGACTCAAGAGGGAGCGTGTG
CCCTTTGTCGAAAATACTCCGACCACTCACCCGAGTCCATCGTCACGCCT
GAAGTGTTTTATTCTGTCTCTACAGAAACCTTCAATTCAGAGACCTTGAT
AAAGAGGCGATGTATCCTAATTGGAACCCAAAGAGGTAGGCACGAACCAC
ACCCAATCATCCTTGGTATGCGTTGTCCAAACATCGAAGTGCGCCTACGA
AAACTCATCCGCTTGCTATATGGTTTCCGGTGATAAACAGTGGCTCGATC
ACGAACCGCGGCCTTTTATGGCAGAGTAGGGTTAGCATTTTGGAGTGCCA
GCCGTAGGGCACGCCTGATTTCCGTCATGTGTGCGGTGTGTGCGGTTAAG
CGCCGTCCCGCGCCACATTATCTGCAGCCGATTCGCCCCGCCCCTCTGCT
GTATTTGAATGGCCAGGTGAAGGAGTTTTTAGATTGGGTGGGGAAAGTGG
CACCGGCCGCGAAGATTGGACTGACCCTCGCTTCAATCGCGTTGAAGGTG
TGCACCGGTCTGGCAGTGTCTGCCGACACATTCGAGGCGGCGTTCGGGAC
ATCAGAGGACTTGTCCGCGTTCGTACAGGACGCACTGTCCGCGGGCATCG
AGGGGATGACGAGCAAGGCCGGCAACAGGCTTGAAAGGCTTCAAAACAGT
GGACCGTCGGAACGGCTACCCCACGCTGGTGTGCGCGGTGACGGAGCGCA
AAAGGTGAGGCTAGCTTTGGCGCCTGCGGTAGGTTGGTTTTGGTCTTGCC
AGAAATGGCTGGAACATCAGGCAGAGTCTTCTTGGTTGGCTTCCTGTGTG
TGGGGGATTCCTGCATGCATGTGCATGTCTGATCGTGTGTGTGTCGCTTG
CCCTCGATCTTGTACATGATGAGTCGCGAAGGCTTGGTTGCTTTGGAGTC
CCTACCAGGTATACTACCAAGACATACGCCATGCTCACAATAAAATGTTC
GGCGCCAGATTCCCCCTCTCACATCCCGCCATGGAACGCTTTTAGCCATC
GGGTGTAGTAGTTAATGCTTTGTTTGCTCTCCCCTCCGTGAGCAGAAATC
GCTCGCTCTTGGTGCCTCTTACCGTGTGTGCCATGAGTTGTGCGTACGTA
TCTGTGTCTCTCTCAATCGAGATGAGTACATTCACTGACCTCTCTCTGCG
CTCATGGCCGCCTTTCTGATTGTCGCATTATTTCCATCGCATATTGGGGC
ATTAGATGCTCGATATCCGACTCTGCACTTATTTTCCGCAAGTGGCAAGA
AATGATTTTTTCTAGTCCTCTCACCCGTTCTCTCAAGCCCCGACAACGCT
GCCTAGAGTCCGATTCTCCCTCCCTCCCTCTCCCTCTCTGTCCCGTTCAC
ACACCGCAGCCGGTTCCTGTGATTTCGACGTGCTCATTTTTATCGTTTGC
GCGAGAAGTCAGACCTCTTTCTTTGCGTTTACGCTTACATACTCTGCGTG
CCATGCGTAAGGGGTATTATTAACGACAATAATATCACGCAAAATGTCAC
GGAAGCGTGTCTTCTTGAATATATATGGAGGTATTTTCCCCCGAAAACGT
GAAAAGAAGGAGCCGAGATTTTGGGGGCTTACTACTATCACGGATCCGTG
TTTTTGACAACTATCGGACAAGCGCACCGCGGGCGCTGTAACATCACTGA
GAACGCTAGAAAGACCTGCCAGACTCACATCCAGGTCTGTTGTGGAGATG
GACAAGCGGCAGAAGTGGCGCTCAGTCCGTTCTTGGTCCAAAACTAGACA
TTGCGTGGTGCTCTCGTCTTCAACTGCTGGTGTTGGTGCTGGGGATTTTT
TTCCAATTACACATAGCAAACACGGAAACAGTTAGACCCTGGGGTTACCC
CCCTGCGGAGCAACAAAAAACGGGCATGCTGCGAATAGATTTTGTTTTTT
TTTTGTTTGAAGGGGGCACACAGACAGCAGTCCTACTTACTTGATCAAAG
ACAAGGAACTGGCAATCNCGCCGTCGAACCGGTGGGGTCCGCCATCTATG
ACCGGTCGGGCTGTGGGGTACTGGCTTTTTGTGTGTGCCAGCATCCTCAG
TGAGCGCAGTGGACACCGCGCATTGCTGCGTGAACGCGCTTTGACCATAT
TTGTCCAGTCTGTTGGTGTGTGTTCGTGTGTCTTTTTATGTTGATTCAAA
TTCCGAACGTTTTTATTGGTCCAAGAAGGAAAAGCGCAGTCTATTTGCCA
CGAAAAGTTCACCCGGTTTGGGACACATTTTTGGCCTGAAAATAGGGGTA
ACCCCAGGGTCTAACAGTAGAACGAGTACAGCAGCAGCAACAAGACCTCC
AACGCGCTGATTCCTTCGGTTCGGCTGTCTATTTGATGCCATCTCCCGGC
GTCGTGCTGCTTCGTGGGTATTGAGTGCTTGGGTGCTACTCAATAAGGTG
TGTGAGACATGTGCCACCTCACCAATATGCCGTTGGAAAAAATGCGGCGA
GATGATCTGTTTTTAGTCAAACACGTCAACATCAATCCACTGCAATACGC
AGCAGAAGAGCAACAGGGCCTCCGACACGCTTATTCTTTCGGATTGGCCA
TCTATTTGATGCTGGCCGTCAGCGCGGCTACCGCATTATGGTTGTTGAGC
TCGTCTACCTTTGGGCAGGTGGTGGTCAAAGATGGGGGTCGCAACCGTGA
AAATTGAGCTGCAAACTGAATAAATCGCAAGTACACCCAGGTTGCGACAC
TGTTTTGCGCAGGTTGCTGAAAGCTGAAAACAGCAGGCCGGGTGGATAGG
ATCTTATTCATTATGTTGTTCTCTGTGTCGGGTGCTGCTCATTGCGCTTT
TACCGCTGCTCTATGGTGAGCAACACCAAGTCAACCTGTTTTGTGCCGAG
CAAAGATTGTATTCAGGGAAGGAAACGTACTTTTTGCGATGACATCACGA
ATAGAGCAAGCGAAGAAAAGTCGGCTTTTCTGTTCATCGTTCCGTGGGGA
ATTGCACGACTTTTCCGTTGCGTTAATAACGAGCCTAAGACCCCTCGTTT
TTACCTAAATACACGCCATTTGCTGTATTGTCACACGTTCAAGCGAACGG
CTTCCTTGTCCCTTTCCCCCGGTGAAGCCTACCCCTTTGGAAGGGTTTGA
CTACGACAAGCTTAAGGAGGTGGTCAAGAGCTTCGAGGTGGACAGGACGC
AGGGAGATGGTACTCGTTACCCCAGCTTCGACACCACCATGAAAATCGTG
GACAGGCACGGAGGTGGCGTGGAGTGGGCATGGGTCAGGAACGGACACAT
CGACAAGTTCGCTGGTGAAAGCTAGCGTCGAGTTGGCGCCACGGTACCTG
AAGGTTCGCCAAGTAGGAACATGCTTCAACCTTCGAGCATGTCGCGCCGT
TTCGTGGGGCTTGGCCAGGACAGCGTATCGATGCGTTTGTTGGGAGAATG
GTGGTATCGTTTTGTGGAGGTGAACTCCTGGTGCGAGCGTGGGGCTATAA
ATTTGTTGTGGTTCCCTGCCCTGAGATGGTGTCCTCCGGACCACGTGTTT
GCTACAGTACGTATGTATTTTTTTGGGTAGGGCCGTTTCAACCTGTAGTT
TTTTTTCGAAAGGAGACCATTCGCAATCCGTGCGGGTTTGAAGAGAGTCC
GGTACCAGGTGTTGTTAACGGTCAAGTACGTGATGCGCCGGAATCACGCA
AAAAAATGGCTGTTTTTTTCGCACCCCTCGGTAAACACAGTGTACCGAGC
TACTGATCAAGGATTGGGAAGCATCTGGTAGTAGTTGTCGAGAGAGAGGG
TAACAAAAGGATCCTTGTGCGCTCCCCGTCAGCATCGCTACGTTCTTGGA
GCACGCCATGTCTTACTACTTTTTGATTTACCGCTATATGAGAGGCAGTA
TTCAGCAGCAGCTCGATTCTAGAAACGTGTAGCTAACCGCCAGCATTTGT
TGAGCACCACCTCCAAAGCGAACGGGCCAGTCAGTAGTGGACTAATGGAG
GCGTGGCAGAGAAGAAGCATTTCGTCAGCAGGTAGGACGCCTACAACATG
GTGGGGTTGGGGTGCTTGTTGTATTGCCAGCAGCG back to topCoding sequence (CDS) from alignment at Scaffold_350:225140..229774+ >EsuBft936_2a-0001 ID=EsuBft936_2a-0001|Name=EsuBft936_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=507bp|location=Sequence derived from alignment at Scaffold_350:225140..229774+ (Ectocarpus subulatus male Bft15b)
ATGGGCAAGGGTACAAGTAGGGTGAAGGAGTTTTTAGATTGGGTGGGGAA
AGTGGCACCGGCCGCGAAGATTGGACTGACCCTCGCTTCAATCGCGTTGA
AGGTGTGCACCGGTCTGGCAGTGTCTGCCGACACATTCGAGGCGGCGTTC
GGGACATCAGAGGACTTGTCCGCGTTCGTACAGGACGCACTGTCCGCGGG
CATCGAGGGGATGACGAGCAAGGCCGGCAACAGGCTTGAAAGGCTTCAAA
ACAGTGGACCGTCGGAACGGCTACCCCACGCTGGTGTGCGCGGTGACGGA
GCGCAAAAGCCTACCCCTTTGGAAGGGTTTGACTACGACAAGCTTAAGGA
GGTGGTCAAGAGCTTCGAGGTGGACAGGACGCAGGGAGATGGTACTCGTT
ACCCCAGCTTCGACACCACCATGAAAATCGTGGACAGGCACGGAGGTGGC
GTGGAGTGGGCATGGGTCAGGAACGGACACATCGACAAGTTCGCTGGTGA
AAGCTAG back to top
|