EsuBft936_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft936_12a-0001
Unique NameEsuBft936_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_350contigScaffold_350:153766..154435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft936_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length67
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft936_12aEsuBft936_12aEctocarpus subulatus male Bft15bgeneScaffold_350 153766..154435 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_12a-0001-exonEsuBft936_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_350 153766..154435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_12a-0001-cdsEsuBft936_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_350 153766..154305 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_12a-0001-exonagat-three_prime_utr-23224Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_350 154306..154435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft936_12a-0001EsuBft936_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_350 153766..154305 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft936_12a-0001 ID=EsuBft936_12a-0001|Name=EsuBft936_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=670bp|location=Sequence derived from alignment at Scaffold_350:153766..154435+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGAGGACGTGATCACTGCGCCTGCATCAGCAGATGGGAAGATCAA
GGCCAAGAAACTCGCCAACCAGACCGCGCCGAAGGAGGGTAAGCTCTGCG
ATCTTTGGTCGGCGTTCAAAGAGCTCACCAAGCTGTACATGGCTCACCAC
TCTATCGCCAAGTGGCAAAGGCACTGCCACGGGCGTTGCTTGGAGACGTT
TCAGGACGGTGACCTTGTCATCGAGACCGACTTTGCCGAGAAGTACACCC
ACCAATCCTTCATCTACATGATGATGCCGGTTTACCCGCAGACAACGCTC
ATGGTGGCCATCGTGCACTTCAACCCGCAGACGCACGTGGGGGGTGGCAG
GGTGCACGTGACGGAAACATGGATCGTTGCATCTGAAGACATGGCGCATA
ACTGCGATTTCCACCTGCACGGCTTGGCCAGGATGGCGGACTACTACCTG
CGATGGGAGCGTAGCAACAGCTGCCGCCCGGAAAGAAGGCCGGACGCCCG
GGATTCACATGTTCACGGATGGATGCGGGAAGCAGTATAAGGGAAGGCGG
AATTTCCGCTTCTTGGCCGACAGCGTGCGGCAAATCGGCTTCTTCATCAA
CCACCACTTCGCGGCCGCATCTCACTTCAAAGGTTACCATGATGGGGTCG
GCGGAGTGGGAAAGAACGCC
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protein sequence of EsuBft936_12a-0001

>EsuBft936_12 ID=EsuBft936_12|Name=EsuBft936_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=179bp
MFEDVITAPASADGKIKAKKLANQTAPKEGKLCDLWSAFKELTKLYMAHH
SIAKWQRHCHGRCLETFQDGDLVIETDFAEKYTHQSFIYMMMPVYPQTTL
MVAIVHFNPQTHVGGGRVHVTETWIVASEDMAHNCDFHLHGLARMADYYL
RWERSNSCRPERRPDARDSHVHGWMREAV
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mRNA from alignment at Scaffold_350:153766..154435+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft936_12a-0001 ID=EsuBft936_12a-0001|Name=EsuBft936_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=670bp|location=Sequence derived from alignment at Scaffold_350:153766..154435+ (Ectocarpus subulatus male Bft15b)
ATGTTCGAGGACGTGATCACTGCGCCTGCATCAGCAGATGGGAAGATCAA
GGCCAAGAAACTCGCCAACCAGACCGCGCCGAAGGAGGGTAAGCTCTGCG
ATCTTTGGTCGGCGTTCAAAGAGCTCACCAAGCTGTACATGGCTCACCAC
TCTATCGCCAAGTGGCAAAGGCACTGCCACGGGCGTTGCTTGGAGACGTT
TCAGGACGGTGACCTTGTCATCGAGACCGACTTTGCCGAGAAGTACACCC
ACCAATCCTTCATCTACATGATGATGCCGGTTTACCCGCAGACAACGCTC
ATGGTGGCCATCGTGCACTTCAACCCGCAGACGCACGTGGGGGGTGGCAG
GGTGCACGTGACGGAAACATGGATCGTTGCATCTGAAGACATGGCGCATA
ACTGCGATTTCCACCTGCACGGCTTGGCCAGGATGGCGGACTACTACCTG
CGATGGGAGCGTAGCAACAGCTGCCGCCCGGAAAGAAGGCCGGACGCCCG
GGATTCACATGTTCACGGATGGATGCGGGAAGCAGTATAAGGGAAGGCGG
AATTTCCGCTTCTTGGCCGACAGCGTGCGGCAAATCGGCTTCTTCATCAA
CCACCACTTCGCGGCCGCATCTCACTTCAAAGGTTACCATGATGGGGTCG
GCGGAGTGGGAAAGAACGCC
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Coding sequence (CDS) from alignment at Scaffold_350:153766..154435+

>EsuBft936_12a-0001 ID=EsuBft936_12a-0001|Name=EsuBft936_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=540bp|location=Sequence derived from alignment at Scaffold_350:153766..154435+ (Ectocarpus subulatus male Bft15b)
ATGTTCGAGGACGTGATCACTGCGCCTGCATCAGCAGATGGGAAGATCAA
GGCCAAGAAACTCGCCAACCAGACCGCGCCGAAGGAGGGTAAGCTCTGCG
ATCTTTGGTCGGCGTTCAAAGAGCTCACCAAGCTGTACATGGCTCACCAC
TCTATCGCCAAGTGGCAAAGGCACTGCCACGGGCGTTGCTTGGAGACGTT
TCAGGACGGTGACCTTGTCATCGAGACCGACTTTGCCGAGAAGTACACCC
ACCAATCCTTCATCTACATGATGATGCCGGTTTACCCGCAGACAACGCTC
ATGGTGGCCATCGTGCACTTCAACCCGCAGACGCACGTGGGGGGTGGCAG
GGTGCACGTGACGGAAACATGGATCGTTGCATCTGAAGACATGGCGCATA
ACTGCGATTTCCACCTGCACGGCTTGGCCAGGATGGCGGACTACTACCTG
CGATGGGAGCGTAGCAACAGCTGCCGCCCGGAAAGAAGGCCGGACGCCCG
GGATTCACATGTTCACGGATGGATGCGGGAAGCAGTATAA
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