EsuBft935_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft935_9a-0001
Unique NameEsuBft935_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_621contigScaffold_621:458079..458541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft935_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length46
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft935_9aEsuBft935_9aEctocarpus subulatus male Bft15bgeneScaffold_621 458079..458541 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft935_9a-0001-exonEsuBft935_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_621 458079..458541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft935_9a-0001-cdsEsuBft935_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_621 458079..458501 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft935_9a-0001-exonagat-five_prime_utr-15103Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_621 458502..458541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft935_9a-0001EsuBft935_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_621 458079..458501 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft935_9a-0001 ID=EsuBft935_9a-0001|Name=EsuBft935_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=463bp|location=Sequence derived from alignment at Scaffold_621:458079..458541- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGCACGAGAAGGCCGCGCCGACGAGAAGGCCACGCCCAACATGGATGAGG
AGTCCATAATGACCGGGGCTGCTGCCGCAGCATCGAGTTTGCAGAACATT
ATGCACACGTTCGACTCCGATGGTGAGCATGATGACCAAGAACCGGGTGG
TTTGTTCGGCGATCTGCGGGTGGAAGAGGAGGAGGAGGAGGAGGAGGAGC
GCGAGAAGCACATCCGGCGCTCCTACCCTCGCCCGGAATACTGGCGGTCA
ACCGGGGGGAAGTGGGTACTGAAGCTGCGAGAGCTGAATGCTGCGGAGGA
GGGGCTGGACCCGGAATGTCGAGAAGCTGTGCAGTTTGCCGGCACCTTCC
GCATCCCTTTCGTGTTGTTCGAGAGCATCATGCAGACGGTCACCTCCATC
TTCCAGTCTTCAGCCAGAGACGTCGCGGGCAGGGATTGCCCACCCGTGGA
ACTCAAGGTGTGN
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protein sequence of EsuBft935_9a-0001

>EsuBft935_9 ID=EsuBft935_9|Name=EsuBft935_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=141bp
MDEESIMTGAAAAASSLQNIMHTFDSDGEHDDQEPGGLFGDLRVEEEEEE
EEEREKHIRRSYPRPEYWRSTGGKWVLKLRELNAAEEGLDPECREAVQFA
GTFRIPFVLFESIMQTVTSIFQSSARDVAGRDCPPVELKVX
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mRNA from alignment at Scaffold_621:458079..458541-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft935_9a-0001 ID=EsuBft935_9a-0001|Name=EsuBft935_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=463bp|location=Sequence derived from alignment at Scaffold_621:458079..458541- (Ectocarpus subulatus male Bft15b)
CGCACGAGAAGGCCGCGCCGACGAGAAGGCCACGCCCAACATGGATGAGG
AGTCCATAATGACCGGGGCTGCTGCCGCAGCATCGAGTTTGCAGAACATT
ATGCACACGTTCGACTCCGATGGTGAGCATGATGACCAAGAACCGGGTGG
TTTGTTCGGCGATCTGCGGGTGGAAGAGGAGGAGGAGGAGGAGGAGGAGC
GCGAGAAGCACATCCGGCGCTCCTACCCTCGCCCGGAATACTGGCGGTCA
ACCGGGGGGAAGTGGGTACTGAAGCTGCGAGAGCTGAATGCTGCGGAGGA
GGGGCTGGACCCGGAATGTCGAGAAGCTGTGCAGTTTGCCGGCACCTTCC
GCATCCCTTTCGTGTTGTTCGAGAGCATCATGCAGACGGTCACCTCCATC
TTCCAGTCTTCAGCCAGAGACGTCGCGGGCAGGGATTGCCCACCCGTGGA
ACTCAAGGTGTGN
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Coding sequence (CDS) from alignment at Scaffold_621:458079..458541-

>EsuBft935_9a-0001 ID=EsuBft935_9a-0001|Name=EsuBft935_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=423bp|location=Sequence derived from alignment at Scaffold_621:458079..458541- (Ectocarpus subulatus male Bft15b)
ATGGATGAGGAGTCCATAATGACCGGGGCTGCTGCCGCAGCATCGAGTTT
GCAGAACATTATGCACACGTTCGACTCCGATGGTGAGCATGATGACCAAG
AACCGGGTGGTTTGTTCGGCGATCTGCGGGTGGAAGAGGAGGAGGAGGAG
GAGGAGGAGCGCGAGAAGCACATCCGGCGCTCCTACCCTCGCCCGGAATA
CTGGCGGTCAACCGGGGGGAAGTGGGTACTGAAGCTGCGAGAGCTGAATG
CTGCGGAGGAGGGGCTGGACCCGGAATGTCGAGAAGCTGTGCAGTTTGCC
GGCACCTTCCGCATCCCTTTCGTGTTGTTCGAGAGCATCATGCAGACGGT
CACCTCCATCTTCCAGTCTTCAGCCAGAGACGTCGCGGGCAGGGATTGCC
CACCCGTGGAACTCAAGGTGTGN
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