EsuBft935_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft935_3a-0001
Unique NameEsuBft935_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_621contigScaffold_621:521864..525167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft935_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length86
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006340.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft935_3aEsuBft935_3aEctocarpus subulatus male Bft15bgeneScaffold_621 521864..525167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft935_3a-0001EsuBft935_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_621 522975..524851 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft935_3a-0001-exonagat-exon-90119Ectocarpus subulatus male Bft15bexonScaffold_621 521864..521921 +
EsuBft935_3a-0001-exonEsuBft935_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_621 522954..523029 +
EsuBft935_3a-0001-exonagat-exon-90122Ectocarpus subulatus male Bft15bexonScaffold_621 523342..523438 +
EsuBft935_3a-0001-exonagat-exon-90121Ectocarpus subulatus male Bft15bexonScaffold_621 523657..523768 +
EsuBft935_3a-0001-exonagat-exon-90120Ectocarpus subulatus male Bft15bexonScaffold_621 524137..524260 +
EsuBft935_3a-0001-exonagat-exon-90118Ectocarpus subulatus male Bft15bexonScaffold_621 524775..525167 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft935_3a-0001-exonagat-five_prime_utr-15098Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_621 521864..521921 +
EsuBft935_3a-0001-exonagat-five_prime_utr-15099Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_621 522954..522974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft935_3a-0001-cdsEsuBft935_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_621 522975..523029 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft935_3a-0001-exonagat-three_prime_utr-23216Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_621 524852..525167 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft935_3a-0001 ID=EsuBft935_3a-0001|Name=EsuBft935_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=860bp|location=Sequence derived from alignment at Scaffold_621:521864..525167+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCTCCACTCTCCCTCGCCAAACCGATTGCAGCCGCAAGAAAGGATGGAG
ATGCCGCGATGATACAGCTTCTGCAGCAGATGCAGAGGGTGAAGCAGAGC
AAAGAAAACAGACGCCAGAAAGGCGAGATTTCAGCGAAAGCCAAAGCCGT
GGCCGCTGGGGTCCGAAGGAATGCGTCCAAGAGAGTGGACGAAGCCAGGG
CCGGCCAGAACAAGCTTGCCACCGAGCTCAGGTCCACGTTGGGGTCTCTG
CACGCGGCTCTTGAGGAGGAAGACCACCTCGCCTCGGTTCTCATGGAAGA
GCAGGAAAACGCCATGAAGGAGGCCGTCAACTCCCTCAGCGAGAAGTACG
AGGAGGCTGCGAAGGTGCAAGCGCGAGTGAAGCTGCTGGGAGATTGCATG
CGGCAGCATTTCCAGGTGGTGCGCAGTCATATCGTCGACCAAGTCGGCAG
CAAGCTCACAGACACGGAGGAAATCGTGCACGCCATACACATTCAGCCCG
ACAAGACGCTCAGCTTGATCAGGAGAGCAGGAGGCTTGTCTTGAGCCGAC
AGCACCAACAAGCAGCGACCAGTCATCCACTACGCTACCACCTGTGTATC
CACCTCGACGACTGGAGTACGCGTCTCCTTGCGGTGTCTGGCACGGCATG
GACCAGCAAGACTGTGCCTTACCTGGATGGATAGAAAGGAAAATATGAAC
AGCGAAAGGACGGGGGCGTGATGATTCATAGCTGGTGCCATACCATCGTC
CATCGTAGCACTGTGAAAATATTGAAGTCAAACTCTTTTCCACCAGCGCA
CCGAAAAACGGCGGGAATTTCAAGCTGTAGTTAGAGTCGCGACATGTATG
ACAGCACGTT
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protein sequence of EsuBft935_3a-0001

>EsuBft935_3 ID=EsuBft935_3|Name=EsuBft935_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=154bp
MQRVKQSKENRRQKGEISAKAKAVAAGVRRNASKRVDEARAGQNKLATEL
RSTLGSLHAALEEEDHLASVLMEEQENAMKEAVNSLSEKYEEAAKVQARV
KLLGDCMRQHFQVVRSHIVDQVGSKLTDTEEIVHAIHIQPDKTLSLIRRA
GGLS
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mRNA from alignment at Scaffold_621:521864..525167+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft935_3a-0001 ID=EsuBft935_3a-0001|Name=EsuBft935_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3304bp|location=Sequence derived from alignment at Scaffold_621:521864..525167+ (Ectocarpus subulatus male Bft15b)
CTCTCCACTCTCCCTCGCCAAACCGATTGCAGCCGCAAGAAAGGATGGAG
ATGCCGCGGTCAGTATTGCCCAACTGTTTTGGGGCTCAGGTCCTACGAGG
CTAATCTGTGTGCTGAAAGTTTTAACCCTCTGTCGCATCGGCGATGTAGA
CTACAGTACAGTACAGTACTGTTTGTCCAGAGTTCGAAGACACATGGAAC
GACCTCAGGGGTGCTTGTATCTCCCTTTATTTGCACTAGGGACTCTGAGC
GACGGATCAAGCAATGTCTAGGCTACACTAAGTGGAGATGTCTTTGAAAC
TCTCTAGGTGTGTAGGTTATCTGACGACGTTGGCAACAATTATTTGCTGC
AGGATGCCTCTGCTATCGATGCTGGACAACCAGCAGCCTGCCGACGGTGC
CATCAGCGATAGCACTATCGCCAAACCGCCAACCCCATTTAAGCTCTCGC
AGCTGGATCTCGGTAGCATAGGGAGCGGCAAGAAGACAAGCGCGAAGAAG
AGAGTAGCAGACACCGCTTTTTCCTCAGACGATGACGAGGATCCGCGCGA
GGAAGCTCAGGTCAATAATTGCTTTGTAGTCTATGTGTATGCTGCTGCCT
TGTTCACTACCCGTAGATCTCACTGCAGACAGGATGCCTGCTGCAATGGT
CTCCGTTCTCGGTGTCATGCAGGCTTGCGCTCTCGAAAGCATCCACCAGG
ATTTTTCGTGTTCTAGGAGAATCGCTACACAATCTCATTCTATCTGTATA
AGGGGATCCCACACTACAATACAATCTACACTACTTGCTGCTGCTGTACT
TGCCATGATGTTTTAGGGGCAAATGTGCGGTGATATCATTTTGATGAAGA
CCACCAGCAGGGACATCTCTAGCTGATACTCTGGCACAAGAAAGCCTCTC
CAGGGATCCATCGAACCTGATGGTGCTTCTATGCGCGCACCTTTGCTAAT
CCACCAGTCACTGGCACGAACCCGATGTACTAGCTTGGAATTAAGTGAAA
CAACAACAGCGTAATATTGCACGCTGAATGAATCATCGCGCTCCACTCCA
TTCCCACCCATTTCCTACGCGTCTGCTCCATGTTCGGCAGATGATACAGC
TTCTGCAGCAGATGCAGAGGGTGAAGCAGAGCAAAGAAAACAGACGCCAG
AAAGGCGAGATTTCAGGTGGGGTTACGGGCAGAAAAGTATGTTGCTCTCT
TTCAGGAGCCAAGACAACAGCGGTCAATCGCAAGCCCAGTGAAGTCATCG
TCTTGCACTCAAACCAAAAATCCACTTCTAGCCCTGTTGGAAAGAAGGTC
GTTCCTGCTTCGGGCGCCTCATGCATAGCAAGGATCTCAACTAGTCATTG
TCGTAAGAAATCTGATATTTTCAGGTGGGCTTTCAGGTAGGCTATGCAAA
GTGCCCTGAAAGGGGCAGACTCATAAACTTGATGTCGTCTGTGCATATCC
ACATTCATTATTTTTTCACGTCGCTCAGCGAAAGCCAAAGCCGTGGCCGC
TGGGGTCCGAAGGAATGCGTCCAAGAGAGTGGACGAAGCCAGGGCCGGCC
AGAACAAGCTTGCCACCGAGCTCAGGTTATAACATAGTAAACTACGAAGT
AGGGCCGGGCAACAAATGATCGGATAGAACCAATAACCGTGTAGAAAAGT
GTTGAAATCCGGTACGTGAAGCTTCCGACATGCCGAGACATCAGCTAGGG
ACGGAAGGTCGAGTGGGAACTTGCCATCTCTTGCGCAACAAGCCCTGGAA
TCTCACACATCCGCGAAGCTTTGCCGAATACGAAATCGCATAGGTCCACG
TTGGGGTCTCTGCACGCGGCTCTTGAGGAGGAAGACCACCTCGCCTCGGT
TCTCATGGAAGAGCAGGAAAACGCCATGAAGGAGGCCGTCAACTCCCTCA
GCGAGGTACCGTACGTTAGGCTGATGTTCGTGGACAATGTTCTCTTTAAA
GAAAGCGCCCGCACACTTGAGAACCTCTACTGCAAGAATTATGTAGCATC
CACTGTTATGCAGCCCACGAGTGAAACCAGGACGCCAGCCTCGGCCTGAA
CGAGAGGTTCTCAACCCCCGTTGTTAAGTGCAAGCACTATCTGAATGACT
GGCCAGCCAGGCAATAGACTGGTGGTTGGAAGGCATTTTTTAGCACGTTC
GTTCTTCCCTTGGAGCTCCGAACCGCTAACGACCCAGAAAGACATGGACG
GTATCACTGAGGTTGAGCGATTGAAAAATATTAGGTGAAACTTCTGTCAC
GCGCTTTGCATTCCCGAAAGCAGAAGTACGAGGAGGCTGCGAAGGTGCAA
GCGCGAGTGAAGCTGCTGGGAGATTGCATGCGGCAGCATTTCCAGGTGGT
GCGCAGTCATATCGTCGACCAAGTCGGCAGCAAGCTCACAGACACGGGTG
AGTCCTGGAAAGGTGTTTTCTACGTCATCCTCGAGAGCTCCGCGGTGGTA
CACTTGGTCCCTTGCTGTTTTTGCGATATTCTTTACATTAGACCTTTGGA
CTGGAACCTCGTATACCTCCAAGTTTACTCTTTATGAGTGGTGCTCGTCA
AGTTACCCGGTCGTTTCTTGTTGGCGGTACGACATTATATCGACTTCACC
CGCTAGCTCGAGTGGTACGGAAGATTTAGGCTAGGGCTACGTCTTTCACA
CGGACGGATTGGCATGTAACATATCAAGGACGCCGGTAAGACGGGTACTT
TGTAGATAGGTATTCGACCTCCATCCGCTGACTGGAAATATTTCTATCCC
GTACATCTTTTCGTGGTTTGCGAACGTTGTTGGTTCATTCCCGAACGCTA
CCGTTGATTCATTCGAGGATGAAGGGAGCGCGCAGTACATCATCCAGTTT
GACTTCCCCAGCCCCCAACGTCTGCATTCCTGCTCACTGCCCTTTGCACG
CATTATCACAGAGGAAATCGTGCACGCCATACACATTCAGCCCGACAAGA
CGCTCAGCTTGATCAGGAGAGCAGGAGGCTTGTCTTGAGCCGACAGCACC
AACAAGCAGCGACCAGTCATCCACTACGCTACCACCTGTGTATCCACCTC
GACGACTGGAGTACGCGTCTCCTTGCGGTGTCTGGCACGGCATGGACCAG
CAAGACTGTGCCTTACCTGGATGGATAGAAAGGAAAATATGAACAGCGAA
AGGACGGGGGCGTGATGATTCATAGCTGGTGCCATACCATCGTCCATCGT
AGCACTGTGAAAATATTGAAGTCAAACTCTTTTCCACCAGCGCACCGAAA
AACGGCGGGAATTTCAAGCTGTAGTTAGAGTCGCGACATGTATGACAGCA
CGTT
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Coding sequence (CDS) from alignment at Scaffold_621:521864..525167+

>EsuBft935_3a-0001 ID=EsuBft935_3a-0001|Name=EsuBft935_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=465bp|location=Sequence derived from alignment at Scaffold_621:521864..525167+ (Ectocarpus subulatus male Bft15b)
ATGCAGAGGGTGAAGCAGAGCAAAGAAAACAGACGCCAGAAAGGCGAGAT
TTCAGCGAAAGCCAAAGCCGTGGCCGCTGGGGTCCGAAGGAATGCGTCCA
AGAGAGTGGACGAAGCCAGGGCCGGCCAGAACAAGCTTGCCACCGAGCTC
AGGTCCACGTTGGGGTCTCTGCACGCGGCTCTTGAGGAGGAAGACCACCT
CGCCTCGGTTCTCATGGAAGAGCAGGAAAACGCCATGAAGGAGGCCGTCA
ACTCCCTCAGCGAGAAGTACGAGGAGGCTGCGAAGGTGCAAGCGCGAGTG
AAGCTGCTGGGAGATTGCATGCGGCAGCATTTCCAGGTGGTGCGCAGTCA
TATCGTCGACCAAGTCGGCAGCAAGCTCACAGACACGGAGGAAATCGTGC
ACGCCATACACATTCAGCCCGACAAGACGCTCAGCTTGATCAGGAGAGCA
GGAGGCTTGTCTTGA
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