EsuBft934_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft934_7a-0001
Unique Name	EsuBft934_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_130	contig	Scaffold_130:420450..422801 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LH66
ProteomeId	EsuBft934_7
Protein domains	PTHR24198
Protein domains	IPR002110
Protein domains	IPR020683
Owner	apollo_admin@sb-roscoff.fr
Note	ankyrin-1 os:homo sapiens gn:ank1 pe:1 sv:3 [Automatic annotation]
Nb exon	3
Max annot lvl	2880.D8LH66\|-
Length	1704
Evalue	1.57e-34
EggNOG OGs	COG0666@1\|root,KOG4177@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
Description	spectrin binding
COG category	I

Cross References

External references for this mRNA


Database	Accession
GO	0051716
GO	0031013
GO	0048731
GO	0030154
GO	0004672
GO	0050794
GO	0006468
GO	0005515
GO	0055085
GO	0016020
GO	0043232
GO	0008022
GO	0042221
GO	0046907
GO	0044765

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft934_7a	EsuBft934_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_130 420450..422801 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft934_7a-0001	EsuBft934_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_130 421191..422801 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft934_7a-0001-exon	agat-exon-42769	Ectocarpus subulatus male Bft15b	exon	Scaffold_130 420450..420667 +
EsuBft934_7a-0001-exon	agat-exon-42767	Ectocarpus subulatus male Bft15b	exon	Scaffold_130 421163..421950 +
EsuBft934_7a-0001-exon	EsuBft934_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_130 422004..422637 +
EsuBft934_7a-0001-exon	agat-exon-42768	Ectocarpus subulatus male Bft15b	exon	Scaffold_130 422738..422801 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft934_7a-0001-exon	agat-five_prime_utr-15096	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_130 420450..420667 +
EsuBft934_7a-0001-exon	agat-five_prime_utr-15097	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_130 421163..421190 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft934_7a-0001-cds	EsuBft934_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_130 421191..421950 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_130:420450..422801+
coding sequence from alignment at Scaffold_130:420450..422801+

spliced messenger RNA

>EsuBft934_7a-0001 ID=EsuBft934_7a-0001|Name=EsuBft934_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1704bp|location=Sequence derived from alignment at Scaffold_130:420450..422801+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGACATCAGTTTGTTTTGTTGCTATGGTGTAACAACCGCAATCAAGGAAA
CGACTTGCAGGGGTACGGCAAAATGCTACCAGACAACAGACAAGAGAAAT
GTCTTGCTCCCAACTCTTGGGTTATTTTTCTTCGCACCCACAAACGCCAG
CTTCTCTGGACCACGTCAAGTTAAAAACGAACGTCGTAAGAAATCTCGTC
GCGATCGCGGGCAACAACCAAACTATAGAGACTAAACAAAGAGACAATGG
GCACTCTCCCCAACATGCCATCGACTCTGAGCAAAGCCAGCGGTTCCGCC
GATCCTACCATTGCTACGACCGACATCGACCGACGCTGTGGTGATACGAA
CCAGACACCGCTGATGGTGGCCTCCGTGATCGGTCCCTCGCGCGTTGTCA
GAGACCTTCTGCGGCAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGT
TATACTGCTCTGCACCACGCGGTTTATCACAAACACCTGGCCGTGAGCAA
AGACCTGATCGAGGCGGGAGCGGACCTTGAAGCGAGGCCTGGTGGCATAG
ATACACCACTTCACGTGGCCGCGACGAAAGGTTTTTACCAAGGAATGGTG
GTGCTGATCGACGCAGGTGCGAACGTGGACAGCAGGCTCGACGACGGATC
AACACCGCTGTTCGAAGCGGCAAAGGACGGGCGGCTCGAAGCGGTCAGGG
TTCTCCTTCGGGCGAACGCGAATCCGCTCTTGTCAGCGTACGGAAGTCTC
CCGTTATATATTATGGCGGTGTACAATGGACATCTGGAAGTGGTCCGCGA
GCTTGTGTATTGGTACGGAATCGATCGCTGTACAAGCGACGGCGGCGCAC
TGGCTCTCGTAACAGCCGCTTCTCGCAAACACGTGGACATCGTCACCTTC
CTGCGCGATGCCGGTGTGGTTGATACGGAGGGCGTGGCCCTGTGTGCCGC
CATTNTATGGCGGTGTACAATGGACATCTGGAAGTGGTCCGCGAGCTTGT
GTATTGCCGCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGCGCGAT
GCCGGTGTGGTTGATACGGAGGGCGTGGCCCTGTGTGCCGCCATTGAGGG
ATGCAGCGAGGCGTGCGTGTACCTTCTGCTGCGAAGACAGGGGGGAAATG
CCAACACAGGTACGCGTGCCTACGTCAATATGGACCACGGTACTCTCCCG
GAAACCTATGACGAATTCGTGTTCCAAGAAACCCCGCTGGTGAGCACATT
CAATCTGGGAAGCTTTCATGCTCCCGGATTCGCGCGCTTGCTACTCGAAG
CCGGGGCGGACGCGACATCGGGCGTTCGGTTTCCGTGCGACAGTGATGAG
GGGGAAGAAGACGAAGGGTTCATCGGCACGCCCCTGGACTTGGCTACATC
ATATTTTCGCAGATTCAGTTCAATGAGTGTCCACCGCGAGATGGTGCCGG
AGCTGAAGGGTGTCATCCGCCTGCTGCGACAGGAGGAGGCAGTTCACTCG
GTGTCCTGGACGTGGCCAATCGACAACGGTCGTTCTGTAGAGCGTGCGTC
CCGAAAGAAACCAACATCGATCGCTCGCATGGTCCCGCTTCTGAAGCGGA
GGGCGGCGAAGCCTCGTGTGCTCTTGGCGGCCCTGTCTAGGTACAACGAA
AAGCAGGATGGAGCCTTCCTCGGATACTTGCCGGAAAAAAGCACGGGAGT
CTAA

protein sequence of EsuBft934_7a-0001

>EsuBft934_7 ID=EsuBft934_7|Name=EsuBft934_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=485bp
MGTLPNMPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRV
VRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSKDLIEAGADLEARPGG
IDTPLHVAATKGFYQGMVVLIDAGANVDSRLDDGSTPLFEAAKDGRLEAV
RVLLRANANPLLSAYGSLPLYIMAVYNGHLEVVRELVYWYGIDRCTSDGG
ALALVTAASRKHVDIVTFLRDAGVVDTEGVALCAAIXWRCTMDIWKWSAS
LCIAASRKHVDIVTFLRDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGG
NANTGTRAYVNMDHGTLPETYDEFVFQETPLVSTFNLGSFHAPGFARLLL
EAGADATSGVRFPCDSDEGEEDEGFIGTPLDLATSYFRRFSSMSVHREMV
PELKGVIRLLRQEEAVHSVSWTWPIDNGRSVERASRKKPTSIARMVPLLK
RRAAKPRVLLAALSRYNEKQDGAFLGYLPEKSTGV

mRNA from alignment at Scaffold_130:420450..422801+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft934_7a-0001 ID=EsuBft934_7a-0001|Name=EsuBft934_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2352bp|location=Sequence derived from alignment at Scaffold_130:420450..422801+ (Ectocarpus subulatus male Bft15b)
CGACATCAGTTTGTTTTGTTGCTATGGTGTAACAACCGCAATCAAGGAAA
CGACTTGCAGGGGTACGGCAAAATGCTACCAGACAACAGACAAGAGAAAT
GTCTTGCTCCCAACTCTTGGGTTATTTTTCTTCGCACCCACAAACGCCAG
CTTCTCTGGACCACGTCAAGTTAAAAACGAACGTCGTAAGAAATCTCGTC
GCGATCGCGGGCAACAACGTAACTACGAAACAAACGAAACCTGAGTACAA
GAAACATATCCGCGCATGTTTTTACAAGCCCATGGACGAAGCCGAGCAAC
GATGTTGACATATTTTCAAAGAAAACATCCCTTGAACGCTGGAGGCAATG
GGGGCAAAGTGTGCATCCACGGACATCGCCACCAAGGGAGAAAACCGTGC
GGAAGGCTTACAAAGCTGTTCAATCCAGGAGCGCAAGGCGCTGGCCATGA
TAAAAAGGGCGGATGCGGCTGCCGGGCGCAGACGGGTATAGAAGAAGAAG
GTTGCCGGTACGAAACGCAAGTCGCCACCGTGTGCTGTGGCTGCAGCTTC
GATAAGGACCAAAGCAGCTAAGGCTACGGCTACGGCGGCCGGGCGCCAGG
TAGACGTTCTAAATAATCAAGGGACCAGAAGCTTGCCGAAAAGGCTCGGA
CCATACATAGGGAGGAGTACCAGGAGGAGGAGGGTAATGTATACGTGTTG
CGATTGTTCACAGCAAACTATAGAGACTAAACAAAGAGACAATGGGCACT
CTCCCCAACATGCCATCGACTCTGAGCAAAGCCAGCGGTTCCGCCGATCC
TACCATTGCTACGACCGACATCGACCGACGCTGTGGTGATACGAACCAGA
CACCGCTGATGGTGGCCTCCGTGATCGGTCCCTCGCGCGTTGTCAGAGAC
CTTCTGCGGCAGGGTGCCAGCGTCTCGGTAGCGGACAGCGACGGTTATAC
TGCTCTGCACCACGCGGTTTATCACAAACACCTGGCCGTGAGCAAAGACC
TGATCGAGGCGGGAGCGGACCTTGAAGCGAGGCCTGGTGGCATAGATACA
CCACTTCACGTGGCCGCGACGAAAGGTTTTTACCAAGGAATGGTGGTGCT
GATCGACGCAGGTGCGAACGTGGACAGCAGGCTCGACGACGGATCAACAC
CGCTGTTCGAAGCGGCAAAGGACGGGCGGCTCGAAGCGGTCAGGGTTCTC
CTTCGGGCGAACGCGAATCCGCTCTTGTCAGCGTACGGAAGTCTCCCGTT
ATATATTATGGCGGTGTACAATGGACATCTGGAAGTGGTCCGCGAGCTTG
TGTATTGGTACGGAATCGATCGCTGTACAAGCGACGGCGGCGCACTGGCT
CTCGTAACAGCCGCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGCG
CGATGCCGGTGTGGTTGATACGGAGGGCGTGGCCCTGTGTGCCGCCATTN
TATGGCGGTGTACAATGGACATCTGGAAGTGGTCCGCGAGCTTGTGTATT
GGTACGGAATCGATCGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGTA
ACAGCCGCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGCGCGATGC
CGGTGTGGTTGATACGGAGGGCGTGGCCCTGTGTGCCGCCATTGAGGGAT
GCAGCGAGGCGTGCGTGTACCTTCTGCTGCGAAGACAGGGGGGAAATGCC
AACACAGGTACGCGTGCCTACGTCAATATGGACCACGGTACTCTCCCGGA
AACCTATGACGAATTCGTGTTCCAAGAAACCCCGCTGGTGAGCACATTCA
ATCTGGGAAGCTTTCATGCTCCCGGATTCGCGCGCTTGCTACTCGAAGCC
GGGGCGGACGCGACATCGGGCGTTCGGTTTCCGTGCGACAGTGATGAGGG
GGAAGAAGACGAAGGGTTCATCGGCACGCCCCTGGACTTGGCTACATCAT
ATTTTCGCAGATTCAGTTCAATGAGTGTCCACCGCGAGATGGTGCCGGAG
CTGAAGGGTGTCATCCGCCTGCTGCGACAGGAGGAGGCAGTTCACTCGGT
GTCCTGGACGTGGCCAATCGACAACGGTCGTTCTGTAGAGCGTGCGTCCC
GAAAGAAACCAACATCGATCGCTCGCATGGTCCCGCTTCTGAAGCGGAGG
GCGGCGAAGCCTCGTGTGCTCTTGGCGGCCCTGTCTAGGTGCGTGGTGAT
GTTGAACTATTCGGGCGTGTGTTGCGGCCAATAAAGGATTTAAAAGTAGT
TGGCTGATGCTTTTACCCGCCCCGCGTCTTATCGACAGGTACAACGAAAA
GCAGGATGGAGCCTTCCTCGGATACTTGCCGGAAAAAAGCACGGGAGTCT
AA

Coding sequence (CDS) from alignment at Scaffold_130:420450..422801+

>EsuBft934_7a-0001 ID=EsuBft934_7a-0001|Name=EsuBft934_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1458bp|location=Sequence derived from alignment at Scaffold_130:420450..422801+ (Ectocarpus subulatus male Bft15b)
ATGGGCACTCTCCCCAACATGCCATCGACTCTGAGCAAAGCCAGCGGTTC
CGCCGATCCTACCATTGCTACGACCGACATCGACCGACGCTGTGGTGATA
CGAACCAGACACCGCTGATGGTGGCCTCCGTGATCGGTCCCTCGCGCGTT
GTCAGAGACCTTCTGCGGCAGGGTGCCAGCGTCTCGGTAGCGGACAGCGA
CGGTTATACTGCTCTGCACCACGCGGTTTATCACAAACACCTGGCCGTGA
GCAAAGACCTGATCGAGGCGGGAGCGGACCTTGAAGCGAGGCCTGGTGGC
ATAGATACACCACTTCACGTGGCCGCGACGAAAGGTTTTTACCAAGGAAT
GGTGGTGCTGATCGACGCAGGTGCGAACGTGGACAGCAGGCTCGACGACG
GATCAACACCGCTGTTCGAAGCGGCAAAGGACGGGCGGCTCGAAGCGGTC
AGGGTTCTCCTTCGGGCGAACGCGAATCCGCTCTTGTCAGCGTACGGAAG
TCTCCCGTTATATATTATGGCGGTGTACAATGGACATCTGGAAGTGGTCC
GCGAGCTTGTGTATTGGTACGGAATCGATCGCTGTACAAGCGACGGCGGC
GCACTGGCTCTCGTAACAGCCGCTTCTCGCAAACACGTGGACATCGTCAC
CTTCCTGCGCGATGCCGGTGTGGTTGATACGGAGGGCGTGGCCCTGTGTG
CCGCCATTNTATGGCGGTGTACAATGGACATCTGGAAGTGGTCCGCGAGC
TTGTGTATTGCCGCTTCTCGCAAACACGTGGACATCGTCACCTTCCTGCG
CGATGCCGGTGTGGTTGATACGGAGGGCGTGGCCCTGTGTGCCGCCATTG
AGGGATGCAGCGAGGCGTGCGTGTACCTTCTGCTGCGAAGACAGGGGGGA
AATGCCAACACAGGTACGCGTGCCTACGTCAATATGGACCACGGTACTCT
CCCGGAAACCTATGACGAATTCGTGTTCCAAGAAACCCCGCTGGTGAGCA
CATTCAATCTGGGAAGCTTTCATGCTCCCGGATTCGCGCGCTTGCTACTC
GAAGCCGGGGCGGACGCGACATCGGGCGTTCGGTTTCCGTGCGACAGTGA
TGAGGGGGAAGAAGACGAAGGGTTCATCGGCACGCCCCTGGACTTGGCTA
CATCATATTTTCGCAGATTCAGTTCAATGAGTGTCCACCGCGAGATGGTG
CCGGAGCTGAAGGGTGTCATCCGCCTGCTGCGACAGGAGGAGGCAGTTCA
CTCGGTGTCCTGGACGTGGCCAATCGACAACGGTCGTTCTGTAGAGCGTG
CGTCCCGAAAGAAACCAACATCGATCGCTCGCATGGTCCCGCTTCTGAAG
CGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGCGGCCCTGTCTAGGTACAA
CGAAAAGCAGGATGGAGCCTTCCTCGGATACTTGCCGGAAAAAAGCACGG
GAGTCTAA