EsuBft934_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft934_4a-0001
Unique Name	EsuBft934_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_130	contig	Scaffold_130:389092..396478 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft934_4
Protein domains	TMhelix
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	TRANSMEMBRANE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	IPR000048
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Length	77
Hectar predicted targeting category	signal anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0031227

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft934_4a	EsuBft934_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_130 389092..396478 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft934_4a-0001	EsuBft934_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_130 389092..396478 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft934_4a-0001-exon	agat-exon-42750	Ectocarpus subulatus male Bft15b	exon	Scaffold_130 389092..389475 -
EsuBft934_4a-0001-exon	agat-exon-42751	Ectocarpus subulatus male Bft15b	exon	Scaffold_130 390482..390556 -
EsuBft934_4a-0001-exon	agat-exon-42749	Ectocarpus subulatus male Bft15b	exon	Scaffold_130 390913..391131 -
EsuBft934_4a-0001-exon	EsuBft934_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_130 396303..396381 -
EsuBft934_4a-0001-exon	agat-exon-42748	Ectocarpus subulatus male Bft15b	exon	Scaffold_130 396465..396478 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft934_4a-0001-cds	EsuBft934_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_130 389092..389475 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_130:389092..396478-
coding sequence from alignment at Scaffold_130:389092..396478-

spliced messenger RNA

>EsuBft934_4a-0001 ID=EsuBft934_4a-0001|Name=EsuBft934_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=771bp|location=Sequence derived from alignment at Scaffold_130:389092..396478- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCAAACCACCGGCACCGAGAGCGACTCAGACGTGGCACCGACGTA
CGATAAGCTGGACCCGTCAGTGACTGCTGCCATACTGGCCCAGGCTGCGT
TTCGAGGCTACCGCCTCCGTGAGCGCCTTCGTCGCCTGCCCGCGAGGGAG
GCGGAGAAGCAGATATTGGGCCTGCACAGCAACGCTCGCGGCTTCCGGCG
GGTGGGCCTCTTCTTGCTGTTTTCCGGGCTGTACTTCGCCTTGGTGTTCT
ACGGAGTGGACGTGGCTTTCCAGCGCTCTGTGCAACAGGCGCTGAGGGAT
CACGTTGCCGGGGTTAAGTACGGTCCGGATCTGGACAAGACCCATCATGA
CGTCGCCTCCCTCGCGGATGTTCACCAGTGGGTTCAGGCCTTTTTCCTGA
AGACTTACGACGGCACGCAACTGGAGCACCCTTGTACACCTTGCGCCATC
AAGCCCCCGGACGATGTCTGTGATGCCTGCGACTTCACTCCCTTAATCGA
AATGTTTGCCAATGATTCGGATTCTTCTGCCGCCGATGATGTCGGCTCCA
AAGGGAAATCCAGCTCCGGCGAGGCGGTAGCAGCGGCTTGGAACGCCCGC
AGGAAGGTGGTGGCTGCTTCCGGTGATAGCAGCAGCAGCAGCAGCAGCAG
CACCACCATGGGCCTGTCTGAGGAGTGTGTGCAGTGCCTGGTGAGCGGGG
GTGATTACAAGGTCGTGAATGTTGTCATCTTTGCTGCGGCCAATTACTTC
GTTCGGAGGTCATCGGAGTAG

protein sequence of EsuBft934_4a-0001

>EsuBft934_4 ID=EsuBft934_4|Name=EsuBft934_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=256bp
MIQTTGTESDSDVAPTYDKLDPSVTAAILAQAAFRGYRLRERLRRLPARE
AEKQILGLHSNARGFRRVGLFLLFSGLYFALVFYGVDVAFQRSVQQALRD
HVAGVKYGPDLDKTHHDVASLADVHQWVQAFFLKTYDGTQLEHPCTPCAI
KPPDDVCDACDFTPLIEMFANDSDSSAADDVGSKGKSSSGEAVAAAWNAR
RKVVAASGDSSSSSSSSTTMGLSEECVQCLVSGGDYKVVNVVIFAAANYF
VRRSSE

mRNA from alignment at Scaffold_130:389092..396478-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft934_4a-0001 ID=EsuBft934_4a-0001|Name=EsuBft934_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=7387bp|location=Sequence derived from alignment at Scaffold_130:389092..396478- (Ectocarpus subulatus male Bft15b)
ATGATCCAAACCACGTACTTGTACACCAAACCAACAGCAGCAGCAGCAGC
CGGCGGCTTTCCGCTCAAGGGCCGCACGGCGGCAGTAGCAGTAGTAGCGG
CACCGAGAGCGACTCAGACGTGGCACCGACGTACGATAAGCTGGACCCGT
CAGTGACTGCTGCCATACTGGCCCAGGTAGGCGGCGTAAAGCATGCACGG
GAGCTGTAGCTCGTACTAAGGGGACACTGCTATACTACACATCATGACAG
CACACGGAGAATATTCCTGCTGTTGCGGCGCAACCCTCGGTGTCTGTTCT
GCACAAGTACGTAGGCATCTGGGAAGGGCCGACGATGCGGGCTTCACACG
CCCGTACAGCAGCAATGTGTGTTCATCATGCCACACACGTGCTCACATAG
GTTTCAGCACTGGAGGCATGACGGACTGTGTTTGCCATGAAGATCAACCT
CCGTAGCATCCGAACTTGAACTCCTCTGGTCCACTGCCCGTCAATCGTCA
GTCAACCCGTTGCAAACGTAGTCTATGACTCCATAAGTAGGTCCAGATTA
TGCTCCCATCATTTGCGTCATTACCCATGCACCAACCTATTCCTCAGCGA
CTGTTTAATTGATACAGCTGTACATATTTGTGGACGCGGACCCCATCACA
TTCCGTGCGCGGGTGTGTGCCTTCACAACCTCAAACTGAACGGAACGGCA
TGTATTTCGAGACCCCATCGCGGAAGATAATGCTGTAATGCTGCTATACC
ACACCCTTGATGCAACATCGGGTCGGGGGCAGGAGCAACACACCAAACGT
GAGTGAATGCGGGAACACAAACGTGAGCGCGGGCGGGCATTTTCCACATT
CCCCCCCCCTCCCTCCCCTTGGTGTTTGCCATCGGGGTTTGGGTTTTCGT
CGCTTGGCAGCGATGTTGTAGAACAAGCCGATCACTTCGTGTGCTCGGCA
ACCATATTACCGCTTTTTCTCTTTGTTTTTTTTTTTTGTGGTAACGATGA
ATGGTGGTCGAGTAGATTATGTTGGGCGGGCTCGAGAACCCTCACCTCGC
GCAAGGGGGATGATCTCACCACGTTGTACCATATTGGTATGTCTCCTGAA
GTGAAAGCACCAGAAAACAAATGAAGTCATACGCATCTGTCATCCGTATC
CAAGGAAGTAAGCACAAGATGCCGAACACCCTTAGCAGGATGCAGCGCAC
CCTTCATGCGACTCGCCGAATACCTCACGACGCTGCGCGCTTGGTGATGT
GAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCNNNNNNNNNNNNNNNN
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GTTACCATGTTGGTATTTTCTGATGTATCCTGGGGCGTTCTTGCCCAATT
GATGGTTAGTCACTTGCGTGAAGAACCAGGGAGGGTGTTCGTGAGTCTGC
GAACATTGCTGTTGGATACATGTGCTGGATGATTTTGTGTCACGCAGACT
GGTATGATACCCGTTTGACAGGGGGCACCGCGATGATTCACGGGGCCCCT
CCTTGCTGTGGGAGCCGCTCTTTGAGCACTCCCTCTTTCGTCCGTGTGAA
GGACGGTCGTCTACCTCCCGTGAAGTTAATACATCACCAAAACAGTCTCA
CCCGATAAATAAGTGGCGTAGGCCGCAAACAAACCCGGCGTGCTCCGTCT
CGGCTTTGTAGGAATGCAAGGTCAATAGTCTAACGACGACGGCATGCACG
ACAATGAATATTCACCCCCCCGGTGTTTGCCATCGGGGTTGGGTTTTCGT
CGCTTGGCAACGACTTTGTAAAACAAGCCGCCCCCCCCGGTGTTTGCCAT
CGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAATAAGCCTTCC
CCCCCCGGTGTTTGCCATCGGAGTTGGGTTTTCGTCGCTTGGCAGCGATG
TTGTATTACAAGCCGATTTCTTCGTGAGCTCGGCAACCAGCTTACCGCTT
TTTTTGCCTTCGTCCTTTTTTTTCGCAGTATCCATGAATGGTGGTCGAGT
AGATAATGTTGGGCGGGCTCGAGGACCCCCACTCCGCGCAAGGGGTAATC
GCACCACGTTGTGTTAAAATTGGTCAGCACTATCGAGGCAGTTTCAAAAT
GCTTACAACTGTCTCTGGAAGTGAAAGTACTAGAGAATAAACTACGTCAT
ATGCAGCTGTCATCCTTACGCAAGGAAGTAAGCACAAGATCCCGAACACC
GTTAGCAGGATGCAGCGCACCCTTCATGCGACTCGCCGAATACGTCACGG
CGCTTCGCGCTTGGTGATGTCAGAGTCTGGTCCGATGAGAACCCGGCGTG
CTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATAGTCTAACGACTACGG
CATGTACGACTATGGGTATACCCCCCCCCACCCCCGAACGAAACCAGGCT
GCGTTTCGAGGCTACCGCCTCCGTGAGCGCCTTCGTCGCCTGCCCGCGAG
GGAGGCGGAGAAGCAGATATTGGGCCTGCACAGCAACGCTCGCGGCTTCC
GGCGGGTGGGCCTCTTCTTGCTGTTTTCCGGGCTGTACTTCGCCTTGGTG
TTCTACGGAGTGGACGTGGCTTTCCAGCGCTCTGTGCAACAGGCGCTGAG
GGATCACGTTGCCGGGGTGAGTGCGGGGGGGTCAGGCGGGGGGGTTACTG
GGGGGTGGGGCGGGGCAGCTGTGGCCATTGTATTGCATTCACAAACAAGA
GGCGTGTCTCGCCCCTTTGGACCCCTGATTTGGACGCAATGGTTAGAGGC
GGGGACTAGTTTTTGTCCGCCACGCAACGGCTGACAGAGGACATGCACCA
CAGCTTTCGTCGGAAGGATCGTTGTGTAGGGGTCTGTCTGCACAGAGAAG
CACGACGATGGTGGTCTTACGGTTTTTGTTGAGCTAGGGAGTATTTCTTC
TTGACCTCGATGAGCTTGCTGTAGGCGCCGACTGCTCCTTCTTGTGTTGC
CTGCTTGCCCCTGGCATGACAGGTTAAGTACGGTCCGGATCTGGACAAGA
CCCATCATGACGTCGCCTCCCTCGCGGATGTTCACCAGTGGGTTCAGGTG
GGCAAGGAACGACTGAGGTGGTATTTTTTCGTCTGTTCGGTCGATAAGCG
TGTGTACCAGGTTGTACGCTTCCGCAACGCCGTCTTTGTATCGTAAACAA
GGCAATTCGTGTGCAAAAGTAAACACGGTGATTTTTGCTATCATAGCTCG
TTGGGCTGGGTCCCTGCCTCTGCTGTCTTCCTTCACGGGTGCCGGACGTT
TAGGTCTCGCAACTCCGGCCATTGCTTCGAGCTGCACCATCATCAGCACG
TGCATAACAGCCACTGTACTTTGACTTTTTGCCGTCGCACGGTTTGTTAG
GACAATAGGAGTGTGTGTGGAGATCGTACCTTCTTGCACGTCTTGCGAAT
TGCGGCCTCTTGCGAAGAGAGGGGTTGGACTGCTATTGTAGGGCGCGGAA
TAATATCAGGAACTGTTGCGACAATCAGGACAGGCAACCGCGTGCCCCTC
AAGAACCCGCAGACTCCGTCCAGCGTGACAACAGGGCCATTTCATAGGTT
CGTCGGGATACATCCGACAATTCTCGTCGCCGACACGCCGATCGTTCAGA
ACCCTCGATGGTTTTTCCTTTTGTCCGTCTTGCTCTCGTTGTCTCTCTCA
GACACAGTTGTTCCATTTGCTTTGGAGTGCACCCCGTGTGCCAACCAAAG
CCGCCGGCTCTTCGGCCGCTTGGGTTTCAAACAAACGTTGTTATTCTTCC
CCTCTGCATGCTCCCCGCATATTTCACGTTTTTCTCGAAGGCCCCCTCCA
CCGTGGTACGGTTGTGTAGTTTCGGAGAACTTCTGACTCTCCATTTCTGC
TTGTCTCGTCTCCTTCGTCGCTGTCTTTGCCTCCATGCCTCTCTTTCTAT
CTGTGTGTCTCCGTATCCGTCTCTGTTTATCTCTCTCTGTTGATCTCTTT
CTCCATCCCTCCCTCCGCACGTGTCTCGCTCTCGTTCTTTTGGGGACGGG
TCACCAAAACCCGGGGCACGACGAACGACGACCAATACGAACCGGGCGCG
TAGGCCTTTTTCCTGAAGACTTACGACGGCACGCAACTGGAGCACCCTTG
TACACCTTGCGCCATCAAGCCCCCGGACGATGTCTGTGATGCCTGCGACT
TCACTCCCTTAATCGAAATGTTTGCCAATGATTCGGATTCTTCTGCCGCC
GATGATGTCGGCTCCAAAGGGAAATCCAGCTCCGGCGAGGCGGTAGCAGC
GGCTTGGAACGCCCGCAGGAAGGTGGTGGCTGCTTCCGGTGATAGCAGCA
GCAGCAGCAGCAGCAGCACCACCATGGGCCTGTCTGAGGAGTGTGTGCAG
TGCCTGGTGAGCGGGGGTGATTACAAGGTCGTGAATGTTGTCATCTTTGC
TGCGGCCAATTACTTCGTTCGGAGGTCATCGGAGTAG

Coding sequence (CDS) from alignment at Scaffold_130:389092..396478-

>EsuBft934_4a-0001 ID=EsuBft934_4a-0001|Name=EsuBft934_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=771bp|location=Sequence derived from alignment at Scaffold_130:389092..396478- (Ectocarpus subulatus male Bft15b)
ATGATCCAAACCACCGGCACCGAGAGCGACTCAGACGTGGCACCGACGTA
CGATAAGCTGGACCCGTCAGTGACTGCTGCCATACTGGCCCAGGCTGCGT
TTCGAGGCTACCGCCTCCGTGAGCGCCTTCGTCGCCTGCCCGCGAGGGAG
GCGGAGAAGCAGATATTGGGCCTGCACAGCAACGCTCGCGGCTTCCGGCG
GGTGGGCCTCTTCTTGCTGTTTTCCGGGCTGTACTTCGCCTTGGTGTTCT
ACGGAGTGGACGTGGCTTTCCAGCGCTCTGTGCAACAGGCGCTGAGGGAT
CACGTTGCCGGGGTTAAGTACGGTCCGGATCTGGACAAGACCCATCATGA
CGTCGCCTCCCTCGCGGATGTTCACCAGTGGGTTCAGGCCTTTTTCCTGA
AGACTTACGACGGCACGCAACTGGAGCACCCTTGTACACCTTGCGCCATC
AAGCCCCCGGACGATGTCTGTGATGCCTGCGACTTCACTCCCTTAATCGA
AATGTTTGCCAATGATTCGGATTCTTCTGCCGCCGATGATGTCGGCTCCA
AAGGGAAATCCAGCTCCGGCGAGGCGGTAGCAGCGGCTTGGAACGCCCGC
AGGAAGGTGGTGGCTGCTTCCGGTGATAGCAGCAGCAGCAGCAGCAGCAG
CACCACCATGGGCCTGTCTGAGGAGTGTGTGCAGTGCCTGGTGAGCGGGG
GTGATTACAAGGTCGTGAATGTTGTCATCTTTGCTGCGGCCAATTACTTC
GTTCGGAGGTCATCGGAGTAG