EsuBft932_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft932_5a-0001
Unique NameEsuBft932_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_489contigScaffold_489:634844..638637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog588596.U9UK42
ProteomeIdEsuBft932_5
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl4751|Fungi
Length215
Hectar predicted targeting categoryother localisation
Evalue1.53e-07
EggNOG OGs29JY0@1|root,2RT6R@2759|Eukaryota,39VBJ@33154|Opisthokonta,3P12S@4751|Fungi
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft932_5aEsuBft932_5aEctocarpus subulatus male Bft15bgeneScaffold_489 634844..638637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft932_5a-0001EsuBft932_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_489 635169..638637 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft932_5a-0001-exonagat-exon-30918Ectocarpus subulatus male Bft15bexonScaffold_489 634844..635355 -
EsuBft932_5a-0001-exonEsuBft932_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_489 635516..635827 -
EsuBft932_5a-0001-exonagat-exon-30915Ectocarpus subulatus male Bft15bexonScaffold_489 636034..636338 -
EsuBft932_5a-0001-exonagat-exon-30916Ectocarpus subulatus male Bft15bexonScaffold_489 636433..636874 -
EsuBft932_5a-0001-exonagat-exon-30917Ectocarpus subulatus male Bft15bexonScaffold_489 636915..637284 -
EsuBft932_5a-0001-exonagat-exon-30919Ectocarpus subulatus male Bft15bexonScaffold_489 638169..638185 -
EsuBft932_5a-0001-exonagat-exon-30914Ectocarpus subulatus male Bft15bexonScaffold_489 638444..638637 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft932_5a-0001-exonagat-three_prime_utr-23194Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_489 634844..635168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft932_5a-0001-cdsEsuBft932_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_489 635169..635355 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft932_5a-0001 ID=EsuBft932_5a-0001|Name=EsuBft932_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2152bp|location=Sequence derived from alignment at Scaffold_489:634844..638637- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGCTTAGTAGCAGTCACTCGCAATGGCAGGCAGAGGACCTCTGA
ACCCGCATGCTTTCCAGAGAGGTCTAAGGGGAAGTGGCGGCTACGGCTCA
TGTTCACAAGCCGGAAAGCAGACAGGCCAACGAGCAAGCACGGCCCCTTG
TGCAACACAGAGCAGGAAGCGCTTGGGGGCACCCTTGCCTTCAGGCTGGA
CTTATATGTCGGAGAGACACGAAGCTTCGTTTTCGACAAACGTGGACCCT
ACCTCGGCGGCCGGATCAAAGACTTGACGGCAACCGTTGCAGCCAACGAG
CAACACATTAAGCGTCTCCAGGACGCCCTCCGGACTGGCCACCTCCCCAG
CCTTCTCCTCCCCCTCCCCCCCCCTTCCGTGGAGGACGGTGAGAACGCGG
GCGATAGGACGTGGGCGGAGGATACGGGGAAGCCGCCGGAGGAAACCGTA
CCCGAGAAGCAGATAAACCGGTTGTGGCAGCAAGCGTACTCATCGTTGGA
GGTGCTGAAAGAGGAGCGGGATAGCGACGTCAAGCAGCTGGAGTGCACGC
GGAAGGCGAACGGGGTTTTGTCCGGCTGCAAGTTTGACCTGCTCAACGAG
GCGTCGTTGGTTCGGCACGAGGCTCCGCTCCTGCGGATCGCGGCAAAGGT
AGCAGGACCTAGTCCGCAGGCTTATGCGCCATCGACGATCCTGAGGTGGC
TCAGAGACTTTCGGAAGGAAGGTGGTTTCAGGCGGGATGCACGGGGTGCG
CACGAGACGGACTGGATCATGTCAGAGGAGGATCTGAAGGGTAAGTTGCT
GGCGTGGATGATACCACAACCGCGTGTCACCGTCAAGGACGTCTGCAAGT
ACATCAACGGGCCTCTGCTCCAAGACGACAAGGAGGATCTTTCCAGGCTC
CATGCGTACCAGGTGAACCTTCCGGTTTCGATGTCCACGACGCACCCGTG
GATGATAAGGCTGGGTTGCAAGTACGAGCGGGCCACCAAGTCGTTCTACA
CGGACAGCCACGAGAAGAAGGAGGAGGAGGTGGACCGACTCGAAAGCCTC
AAGGCACGAGGCCCGGAGGGAGGTTTCTACGCAGAGGTGTACGACTGCAA
GATCGATGGACAAGACTGCATCGCATTCCACTTAGATCTCCTGCGCGACG
ACGGCTCCGTCGATAACTTCGACAAGCTCCGCGCCGCACTTGGTCCAGAG
GGTGGGGACTGCAGCTTTCGCTTCGATCAGGCCGCTGCTGCCCCAGTGCG
AGCATTCCACCCCCCGAACAAGTGCAACTGCGGCAAGAAGGTGCACCACA
TCGAGGAGGACGAGAGTGCCTACAAGGCGTTTCTTGAATACGGAAAAGGC
AAGGAAGGGTACTGGGGCTACGACCAGTTCGAAGAGCAGGTCGAAGACGT
GATGGACGTCTTGGAGCACATCGACCCCGACATGCAAGTAGTGTTCGAGG
TCGACCACGCGTCGGGCCATGGGAAGCAGCGAGAGGATGGTTTGTACCTA
TCGAACATGAACGTCAAGTATGAGGGGAAGCAAAAGGTGTTGCGGGATTC
GGTCATGACGGAGGGGTGCTTGGGTCCGGAGGAGGCGAAAATGTATTTCG
CCAACGGCAAGTGGAGCACGAAGTTCAGCGAGGGGGCAGTGCAGTACCTG
TGGGAGCGTGGGTGGTGGAAGGACGGGATGTCAACAAGGGCGGGAGTCAG
CGACGAGATGCATGTGGAAAAGGTTCTGCAAACCTTGCCTGACTTAAAGA
ACGAGAGAACAGCCCTGCAGTACCTGGTAGAGAGTAGGGGACACATTCTT
TTGTCGTCTCCGAAAGTGTCTCCCTGAGGTAGCGGGGGTAGGGATCGAGT
ACTCGTGGGGGTTTTCCAAGCAGGAGTTTCGGCGGAAGATCAATGCTGAG
GTCCCGAAGCACTTGCACGACAACATCGAAAAGTCCCTGTGCATAGACAA
GTACTTGACGATCGGTCGGGTGCGGCGCTTTGCCCGGCGGACACGAGACT
ACTGCCGGGCTTACCGCGAGATTGCGCTGAGCGGGGTAGTCATCAGGAGC
AAGGAGTTCATCGAGAAGATGCACAAGGTCCAAAAGGCCCACCGCAACAT
TTTGGACATGGAAACTAGTTTTCTTGGCGGCCAGTAACAGCGTCGGCCGG
CT
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protein sequence of EsuBft932_5a-0001

>EsuBft932_5 ID=EsuBft932_5|Name=EsuBft932_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=608bp
MESLVAVTRNGRQRTSEPACFPERSKGKWRLRLMFTSRKADRPTSKHGPL
CNTEQEALGGTLAFRLDLYVGETRSFVFDKRGPYLGGRIKDLTATVAANE
QHIKRLQDALRTGHLPSLLLPLPPPSVEDGENAGDRTWAEDTGKPPEETV
PEKQINRLWQQAYSSLEVLKEERDSDVKQLECTRKANGVLSGCKFDLLNE
ASLVRHEAPLLRIAAKVAGPSPQAYAPSTILRWLRDFRKEGGFRRDARGA
HETDWIMSEEDLKGKLLAWMIPQPRVTVKDVCKYINGPLLQDDKEDLSRL
HAYQVNLPVSMSTTHPWMIRLGCKYERATKSFYTDSHEKKEEEVDRLESL
KARGPEGGFYAEVYDCKIDGQDCIAFHLDLLRDDGSVDNFDKLRAALGPE
GGDCSFRFDQAAAAPVRAFHPPNKCNCGKKVHHIEEDESAYKAFLEYGKG
KEGYWGYDQFEEQVEDVMDVLEHIDPDMQVVFEVDHASGHGKQREDGLYL
SNMNVKYEGKQKVLRDSVMTEGCLGPEEAKMYFANGKWSTKFSEGAVQYL
WERGWWKDGMSTRAGVSDEMHVEKVLQTLPDLKNERTALQYLVESRGHIL
LSSPKVSP
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mRNA from alignment at Scaffold_489:634844..638637-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft932_5a-0001 ID=EsuBft932_5a-0001|Name=EsuBft932_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3794bp|location=Sequence derived from alignment at Scaffold_489:634844..638637- (Ectocarpus subulatus male Bft15b)
ATGGAGAGCTTAGTAGCAGTCACTCGCAATGGCAGGCAGAGGACCTCTGA
ACCCGCATGCTTTCCAGAGAGGTCTAAGGGGAAGTGGCGGCTACGGCTCA
TGTTCACAAGCCGGAAAGCAGACAGGCCAACGAGCAAGCACGGCCCCTTG
TGCAACACAGAGCAGGAAGCGCTTGGGGGCACCCTTGCCTTCAGGTACAG
CTAGGAGGGCATCCAATGTGGTCAGCCTTGCGAGGTCATCAAGGAGAATC
TAGTCCCACCTGTTGTAGTGGGCGCTACACTTCCAGCAGGCAAGTCGTGA
ACTACGTACACTTGTACAAACACGATGTAGACATGATCATGCAGTTTTGA
TTTTTTGTTGTTTTTTCTGGGGTCGGAGCAACGGCAGCACACGTGACACC
AATGCCACCGTCTGCTGCTGTACCTACTTGCACGCAGCCAGTCATGCCAC
AGGCTGGACTTATATGTCGGTATGTTCTTTTAGGGACGTGACTAAGGTGG
CATTACAATAGAGGTGGCGGTGTCTGTTGATTTGTACACGACCACATTTT
TTTTTGTGAGATGTGGTTGTCAGCCGAGTTTTGATTTTTCGACGGCATGC
TTCGCATGCACAAGTGTACTCACCCGACGTGATATCCACGTCCACATGAG
TTTCCTTCACTACCCGTCTGTTGTTCTGGTACTGGAGGCGCCTACAGCAG
TACGCACAACATGTTTTGCTACAATATGGTGCCTGTACACCCCGATGTGT
TTGCTGCAACGATGTGCTACCGTATATGACATAAGATAACACCCCCCTGG
ACCGATGTTGAAAGCTCGATTCATCGACAGCAGAACCAGTCGCAGCGCCG
AAAACGGCGGTGTTGAAGCCGTCTGGTCGAGAGCTCTCCGAAAGCTTATC
GTTTTTTTCATGCATCCTCTTTGTCGTGGAGTAATCGAGCTGTGGAAATC
GGCCCAGGGGAAGTGTTGTCATGTGTCGTACTTCGGTCTGCAAGTAAAAC
TCTGCATGAAAATGCGCCGACGTCGTCACACATCCACGAAAGGTTGACCG
GTTGTTGCACCTTTGCTCGTCACGCACTACTGGGGTGATCTCCAACTCTT
AAATACTTGCTGCGAGTACTGCTGTAGTGCAAAGCAAAAAATAACAACGT
GCCGCCCTGCCTCGTGCTTCAAATTCCCAACCGCCGTTCAAGCAGGAAAA
ATCGCTCAACAGCCTTGGGATCATCGGCCGACCACAGCAACGGCAGTTCA
AGCGACAGCGGCGGGCTGGCTCCGACGCGACCCGCGCGGAATTTGCGATG
CAGCAGATGCTCACCAGTCGCGAAAAACGCTCGATAGAGCGGGGTTGGAG
AAGGAGAGACACGAAGCTTCGTTTTCGACAAACGTGGACCCTACCTCGGC
GGCCGGATCAAAGACTTGACGGCAACCGTTGCAGCCAACGAGCAACACAT
TAAGCGTCTCCAGGACGCCCTCCGGACTGGCCACCTCCCCAGCCTTCTCC
TCCCCCTCCCCCCCCCTTCCGTGGAGGACGGTGAGAACGCGGGCGATAGG
ACGTGGGCGGAGGATACGGGGAAGCCGCCGGAGGAAACCGTACCCGAGAA
GCAGATAAACCGGTTGTGGCAGCAAGCGTACTCATCGTTGGAGGTGCTGA
AAGAGGAGCGGGATAGCGACGTCAAGCAGCTGGAGTGCACGCGGAAGGCG
AACGGGGTTTTGTCCGGCTGCAAGTATGCAACGGATGCCGCCGTGAAGGA
AGCCAATGCCAAGGTTTGACCTGCTCAACGAGGCGTCGTTGGTTCGGCAC
GAGGCTCCGCTCCTGCGGATCGCGGCAAAGGTAGCAGGACCTAGTCCGCA
GGCTTATGCGCCATCGACGATCCTGAGGTGGCTCAGAGACTTTCGGAAGG
AAGGTGGTTTCAGGCGGGATGCACGGGGTGCGCACGAGACGGACTGGATC
ATGTCAGAGGAGGATCTGAAGGGTAAGTTGCTGGCGTGGATGATACCACA
ACCGCGTGTCACCGTCAAGGACGTCTGCAAGTACATCAACGGGCCTCTGC
TCCAAGACGACAAGGAGGATCTTTCCAGGCTCCATGCGTACCAGGTGAAC
CTTCCGGTTTCGATGTCCACGACGCACCCGTGGATGATAAGGCTGGGTTG
CAAGTACGAGCGGGCCACCAAGTCGTTCTACACGGACAGCCACGAGAAGA
AGGAGGTAGTCGACATCGGGGCGATTACATAGAGAAGAGACCAAGATGGC
GCTGCGTCAACCATTGTGGGTACAAGCGCAATGAGGCGCTCTCAAGCAGG
AGGAGGTGGACCGACTCGAAAGCCTCAAGGCACGAGGCCCGGAGGGAGGT
TTCTACGCAGAGGTGTACGACTGCAAGATCGATGGACAAGACTGCATCGC
ATTCCACTTAGATCTCCTGCGCGACGACGGCTCCGTCGATAACTTCGACA
AGCTCCGCGCCGCACTTGGTCCAGAGGGTGGGGACTGCAGCTTTCGCTTC
GATCAGGCCGCTGCTGCCCCAGTGCGAGCATTCCACCCCCCGAACAAGTG
CAACTGCGGCAAGAAGGTGCACCACATCGAGGAGGACGAGAGTGCCTACA
AGGCGTATGCACCCGAGGGCAAAGAGTGGGTGATTGGAGGGGTGCGCGGA
CTGCGGGAAACGACGGAGGGACCGGGGGAAATGGTGTCTGGTTTTCAAGA
CGAAAGACACGGTTTCGGCTTACCTATTTCGGACGCCGACCTGGCGGCGG
TGAACGCCAAACGCAAGGAGAGGAATGGGGAAAACCCCTGACGCGAAGCC
CTGGACTCAGGTTTCTTGAATACGGAAAAGGCAAGGAAGGGTACTGGGGC
TACGACCAGTTCGAAGAGCAGGTCGAAGACGTGATGGACGTCTTGGAGCA
CATCGACCCCGACATGCAAGTAGTGTTCGAGGTCGACCACGCGTCGGGCC
ATGGGAAGCAGCGAGAGGATGGTTTGTACCTATCGAACATGAACGTCAAG
TATGAGGGGAAGCAAAAGGTGTTGCGGGATTCGGTCATGACGGAGGGGTG
CTTGGGTCCGGAGGAGGCGAAAATGTATTTCGCCAACGGCAAGTGGAGCA
CGAAGTTCAGCGAGGGGGCAGTGTGTGTTGACCAGAAGCTGAAGGTGGGC
CAGACTCAGACTAGCACTTGCGCGGTAGCTGCGCCTCCTCCGTTTTTTTG
AATGGGACGCTCCGCGCAAAGACAAGAAGAACGCGAAGGGGAAGGTCAAG
GAAGGGTACGAGGGGAAAGCGAAAGGGGTCAGGCAGTACCTGTGGGAGCG
TGGGTGGTGGAAGGACGGGATGTCAACAAGGGCGGGAGTCAGCGACGAGA
TGCATGTGGAAAAGGTTCTGCAAACCTTGCCTGACTTAAAGAACGAGAGA
ACAGCCCTGCAGTACCTGGTAGAGAGTAGGGGACACATTCTTTTGTCGTC
TCCGAAAGTGTCTCCCTGAGGTAGCGGGGGTAGGGATCGAGTACTCGTGG
GGGTTTTCCAAGCAGGAGTTTCGGCGGAAGATCAATGCTGAGGTCCCGAA
GCACTTGCACGACAACATCGAAAAGTCCCTGTGCATAGACAAGTACTTGA
CGATCGGTCGGGTGCGGCGCTTTGCCCGGCGGACACGAGACTACTGCCGG
GCTTACCGCGAGATTGCGCTGAGCGGGGTAGTCATCAGGAGCAAGGAGTT
CATCGAGAAGATGCACAAGGTCCAAAAGGCCCACCGCAACATTTTGGACA
TGGAAACTAGTTTTCTTGGCGGCCAGTAACAGCGTCGGCCGGCT
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Coding sequence (CDS) from alignment at Scaffold_489:634844..638637-

>EsuBft932_5a-0001 ID=EsuBft932_5a-0001|Name=EsuBft932_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1827bp|location=Sequence derived from alignment at Scaffold_489:634844..638637- (Ectocarpus subulatus male Bft15b)
ATGGAGAGCTTAGTAGCAGTCACTCGCAATGGCAGGCAGAGGACCTCTGA
ACCCGCATGCTTTCCAGAGAGGTCTAAGGGGAAGTGGCGGCTACGGCTCA
TGTTCACAAGCCGGAAAGCAGACAGGCCAACGAGCAAGCACGGCCCCTTG
TGCAACACAGAGCAGGAAGCGCTTGGGGGCACCCTTGCCTTCAGGCTGGA
CTTATATGTCGGAGAGACACGAAGCTTCGTTTTCGACAAACGTGGACCCT
ACCTCGGCGGCCGGATCAAAGACTTGACGGCAACCGTTGCAGCCAACGAG
CAACACATTAAGCGTCTCCAGGACGCCCTCCGGACTGGCCACCTCCCCAG
CCTTCTCCTCCCCCTCCCCCCCCCTTCCGTGGAGGACGGTGAGAACGCGG
GCGATAGGACGTGGGCGGAGGATACGGGGAAGCCGCCGGAGGAAACCGTA
CCCGAGAAGCAGATAAACCGGTTGTGGCAGCAAGCGTACTCATCGTTGGA
GGTGCTGAAAGAGGAGCGGGATAGCGACGTCAAGCAGCTGGAGTGCACGC
GGAAGGCGAACGGGGTTTTGTCCGGCTGCAAGTTTGACCTGCTCAACGAG
GCGTCGTTGGTTCGGCACGAGGCTCCGCTCCTGCGGATCGCGGCAAAGGT
AGCAGGACCTAGTCCGCAGGCTTATGCGCCATCGACGATCCTGAGGTGGC
TCAGAGACTTTCGGAAGGAAGGTGGTTTCAGGCGGGATGCACGGGGTGCG
CACGAGACGGACTGGATCATGTCAGAGGAGGATCTGAAGGGTAAGTTGCT
GGCGTGGATGATACCACAACCGCGTGTCACCGTCAAGGACGTCTGCAAGT
ACATCAACGGGCCTCTGCTCCAAGACGACAAGGAGGATCTTTCCAGGCTC
CATGCGTACCAGGTGAACCTTCCGGTTTCGATGTCCACGACGCACCCGTG
GATGATAAGGCTGGGTTGCAAGTACGAGCGGGCCACCAAGTCGTTCTACA
CGGACAGCCACGAGAAGAAGGAGGAGGAGGTGGACCGACTCGAAAGCCTC
AAGGCACGAGGCCCGGAGGGAGGTTTCTACGCAGAGGTGTACGACTGCAA
GATCGATGGACAAGACTGCATCGCATTCCACTTAGATCTCCTGCGCGACG
ACGGCTCCGTCGATAACTTCGACAAGCTCCGCGCCGCACTTGGTCCAGAG
GGTGGGGACTGCAGCTTTCGCTTCGATCAGGCCGCTGCTGCCCCAGTGCG
AGCATTCCACCCCCCGAACAAGTGCAACTGCGGCAAGAAGGTGCACCACA
TCGAGGAGGACGAGAGTGCCTACAAGGCGTTTCTTGAATACGGAAAAGGC
AAGGAAGGGTACTGGGGCTACGACCAGTTCGAAGAGCAGGTCGAAGACGT
GATGGACGTCTTGGAGCACATCGACCCCGACATGCAAGTAGTGTTCGAGG
TCGACCACGCGTCGGGCCATGGGAAGCAGCGAGAGGATGGTTTGTACCTA
TCGAACATGAACGTCAAGTATGAGGGGAAGCAAAAGGTGTTGCGGGATTC
GGTCATGACGGAGGGGTGCTTGGGTCCGGAGGAGGCGAAAATGTATTTCG
CCAACGGCAAGTGGAGCACGAAGTTCAGCGAGGGGGCAGTGCAGTACCTG
TGGGAGCGTGGGTGGTGGAAGGACGGGATGTCAACAAGGGCGGGAGTCAG
CGACGAGATGCATGTGGAAAAGGTTCTGCAAACCTTGCCTGACTTAAAGA
ACGAGAGAACAGCCCTGCAGTACCTGGTAGAGAGTAGGGGACACATTCTT
TTGTCGTCTCCGAAAGTGTCTCCCTGA
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